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RNASeq Echinococcus multilocularis

Echinococcus multilocularis - public RNASeq studies

Analysed

DRP003063: Transcriptome profile changes during the early larval development from egg of Echinococcus multilocularis

TOTTORI

Analysis on Gene Expression Profile in Oncospheres and Early Stage Metacestodes from Echinococcus multilocularis. (Huang .. Oku, 2016)

Design: 3 conditions

Condition num. replicates Geographic location Organism part
Activated eggs 1 Japan:Hokkaido Activated eggs
In vitro-cultured small vesicles 1 Japan:Hokkaido In vitro-cultured small vesicles
Nonactivated eggs 2 Japan:Hokkaido Nonactivated eggs

ERP001209: Cestode transcriptomics

Wellcome Sanger Institute

The main objective of this project is to recognize genes expressed in the life stages and tissue types of a variety of different cestode species, including Echinococcus multilocularis, E. granulosus, Hymenolepis microstoma, H. nana and others.

Design: 5 conditions

Condition num. replicates Sample Strain
Activated protoscolex, MS10 1 Activated protoscolex MS10
Metacestode vesicle, without brood chambers, G8065 1 Metacestode vesicle, without brood chambers G8065
Non-activated protoscolex, MS10 1 Non-activated protoscolex MS10
Primary cells (stage 1), G8065 1 Primary cells (stage 1) G8065
Primary cells 11 days (stage 2), G8065 1 Primary cells 11 days (stage 2) G8065

ERP004459: Analysis of RNA expression in tapeworm species

Wellcome Sanger Institute

Project to investigate gene and small RNA expression of tapeworms (including Echinococcus multilocularis, E. granulosus, Hymenolepis microstoma).

Design: 24 conditions

Condition num. replicates Culture conditions Developmental stage Strain
Activated protoscolex, GH09 1 Activated protoscolex GH09
Activated protoscolex, Ingrid 1 Activated protoscolex Ingrid
Activated protoscolex, MS10 1 Activated protoscolex MS10
Non-activated protoscolex, GH09 1 Non-activated protoscolex GH09
Non-activated protoscolex, Ingrid 1 Non-activated protoscolex Ingrid
Non-activated protoscolex, MS10 1 Non-activated protoscolex MS10
Primary cells 11 days (stage 2), G8065 1 Primary cells 11 days (stage 2) G8065
Primary cells 16 days (stage 3), H95 1 Primary cells 16 days (stage 3) H95
Primary cells 21 days (stage 3), Ingrid 1 Primary cells 21 days (stage 3) Ingrid
Primary cells 22 days (stage 3), 7030 1 Primary cells 22 days (stage 3) 7030
Primary cells 48 h (stage 1), G8065 1 Primary cells 48 h (stage 1) G8065
Primary cells 48 h (stage 1), H95 1 Primary cells 48 h (stage 1) H95
Primary cells 48 h (stage 1), Ingrid 1 Primary cells 48 h (stage 1) Ingrid
Primary cells 7 days (stage 2), 7030 1 Primary cells 7 days (stage 2) 7030
Primary cells 9 days (stage 2), H95 1 Primary cells 9 days (stage 2) H95
aerobic co-culture with Rh feeder cells, Metacestode, H95 2 aerobic co-culture with Rh feeder cells Metacestode H95
aerobic co-culture with Rh feeder cells, Metacestode, Ingrid 1 aerobic co-culture with Rh feeder cells Metacestode Ingrid
axenic culture with hydroxyurea, Metacestode, Ingrid 3 axenic culture with hydroxyurea Metacestode Ingrid
axenic culture, Metacestode, Ingrid 3 axenic culture Metacestode Ingrid
extracted from jird, Metacestode, H95 2 extracted from jird Metacestode H95
in vivo, Metacestode, H95 1 in vivo Metacestode H95
vesicle without brood chambers, Metacestode, GT10 1 vesicle without brood chambers Metacestode GT10
vesicle without brood chambers, Metacestode, H95 1 vesicle without brood chambers Metacestode H95
vesicle without brood chambers, Metacestode, Ingrid 1 vesicle without brood chambers Metacestode Ingrid

Other

These studies are available in ENA, and the reads successfully align to our genomes.
We have decided not to include them in our analysis.
Either they failed to meet minimal criteria for inclusion, we've been asked to exclude them for data quality reasons, or we were unable to interpret the metadata.

SRP044131: Transcriptome analysis of mRNA and microRNA in the cestodes Echinococcus granulosus and Echinococcus multilocularis