Fasciola hepatica - public RNASeq studies
Table of Contents
Analysed
ERP006566: RNAseq analysis of the liver fluke Fasciola hepatica
University of Liverpool
RNA from eggs, metacercariae, newly emerged juveniles, 21 day juveniles and adults were sequenced in order to examine changes in expression through development. This study was led by Prof John Dalton, University of McGill, Canada.
The Fasciola hepatica genome: gene duplication and polymorphism reveals adaptation to the host environment and the capacity for rapid evolution. (Cwiklinski .. Paterson, 2015)
Design: 7 conditions
| Condition | num. replicates | Developmental stage |
|---|---|---|
| Adult | 1 | adult |
| Egg | 1 | eggs |
| Juveniles | 1 | juvenile (21day) |
| Metacercariae | 3 | metacercariae |
| Newly emerged juveniles 1hr | 2 | newly excysted juveniles (1hr) |
| Newly emerged juveniles 24hrs | 2 | newly excysted juveniles (24hr) |
| Newly emerged juveniles 3hrs | 2 | newly excysted juveniles (3hr) |
Other
These studies are available in ENA, and the reads successfully align to our genomes.
They have not been included in our analysis for one of the following reasons:
Failed to meet minimal criteria for differential expression analysis, failure to pass data quality filters, or we were unable to interpret accompanying metadata.
ERP006623: Some RNA-seq reads from different developmental stages of the liver fluke Fasciola hepatica
University of Liverpool
RNA was prepared from various stages of the liver fluke Fasciola hepatica by John Dalton's group and sequenced by Genome Quebec.
The Fasciola hepatica genome: gene duplication and polymorphism reveals adaptation to the host environment and the capacity for rapid evolution. (Cwiklinski .. Paterson, 2015)
SRP040521: Fasciola hepatica isolate:Oregon Genome sequencing
The Genome Institute
SRP082264: Transcriptomic analysis of F. hepatica Southamerican drug resistant isolates
Facultad de Medicina. Universidad de la Republica
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