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RNASeq Globodera pallida

Globodera pallida - public RNASeq studies


ERP001236: Globodera pallida transcriptomics

Wellcome Sanger Institute

As part of the Globodera pallida (potato cyst nematode) genome project we are profiling the transcriptome of the parasite across its life cycle using RNA-Seq. .


  • Characteristics and conditions per run

  • Counts of aligned reads per run (HTSeq2)

  • Gene expression (TPM) per run

  • Differential expression

Design: 8 conditions

Condition num. replicates Developmental stage
14 dpi 2 14 dpi
21 dpi 2 21 dpi
28 dpi 2 28 dpi
35 dpi 2 35 dpi
7 dpi 1 7 dpi
Adult male 2 Adult male
J2 3 J2
egg 2 egg


These studies are available in ENA, and the reads successfully align to our genomes.
If you would like some of them included in the analysis, please let us know!

SRP146253: Globodera spp. host specificity

Agriculture and Agri-Food Canada