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RNASeq Haemonchus contortus

Haemonchus contortus - public RNASeq studies

Analysed

ERP002173: Haemonchus contortus transcriptome

Wellcome Sanger Institute

Design: 13 conditions

Condition num. replicates Developmental stage Sex Strain
CAVR 3 CAVR
ISE 34 ISE
L1, inbred ISE 3 L1 inbred ISE
L4, inbred ISE 3 L4 inbred ISE
MHco3(ISE) 2 MHco3(ISE)
WRS 3 WRS
adult, female, inbred ISE 3 adult female inbred ISE
adult, male, inbred ISE 3 adult male Inbred ISE
dissected adult female gut, ISE 1 dissected adult female gut ISE
dissected adult female gut, MHco3(ISE) 2 dissected adult female gut MHco3(ISE)
eggs, inbred ISE 3 eggs inbred ISE
inbred ISE 6 Inbred ISE
sheathed L3, inbred ISE 3 sheathed L3 Inbred ISE

SRP026668: Haemonchus contortus transcriptome (from Haecon-5)

Cornell University

The barber's pole worm CAP protein superfamily--A basis for fundamental discovery and biotechnology advances. (Mohandas .. Gasser, 2015)

Design: 8 conditions

Condition num. replicates Developmental stage Sex
Adult female 1 adult female
Adult male 1 adult male
Egg 1 Egg mixed
L1 1 L1 mixed
L2 2 L2 mixed
L3 1 L3 mixed
L4 female 1 L4 female
L4 male 1 L4 male

SRP136037: Haemonchus contortus strain:haecon5 Genome sequencing

The University of Melbourne

Design: 3 conditions

Condition num. replicates Developmental stage Collection date Geo loc name Host Isolate Organism part
L4 5 L4 22-Nov-16 Australia: Parkville, VIC Ovis aries Australia 4000 worms
ensheathed L3 5 ensheathed L3 22-Nov-16 Australia: Parkville, VIC Ovis aries Australia 4000 worms
exsheathed L3 5 exsheathed L3 22-Nov-16 Australia: Parkville, VIC Ovis aries Australia 4000 worms

Other

These studies are available in ENA, and the reads successfully align to our genomes.
They have not been included in our analysis for one of the following reasons:
Failed to meet minimal criteria for differential expression analysis, failure to pass data quality filters, or we were unable to interpret accompanying metadata.

ERP017923: Haemonchus contortus miRNA sequencing

Wellcome Sanger Institute

Sequencing H. contortus miRNA libraries.

3 runs in ENA

ERP017925: Haemonchus contortus drug resistance transcriptomics

Wellcome Sanger Institute

MHco3 is the anthelmintic-susceptible reference isolate and MHco4 and MHco10 are anthelmintic-resistant isolates. The samples submitted are from 4th generation backcrosses and the progeny of each backcross generation was selected for resistance with ivermectin. RNA-seq analysis of each backcross will compare gene expression with the anthelmintic-susceptible and -resistant parent isolates with the aim of detecting differential gene expression associated with resistance.

2 runs in ENA

SRP049065: Haemonchus contortus Transcriptome or Gene expression

The Genome Institute

3 runs in ENA