WormBase ParaSite HomeVersion: WBPS14 (WS271)
e.g. O. volvulus, PRJNA60051, WBGene00262434, Bma-eat-4, eat-4 or metallopeptidase
RNASeq Heligmosomoides polygyrus

Heligmosomoides polygyrus - public RNASeq studies

Analysed

SRP157940: RNA-Seq of Heligmosomoides polygyrus under varying mice gut condition

Robert Koch Insitute

Parasitic Nematodes Exert Antimicrobial Activity and Benefit From Microbiota-Driven Support for Host Immune Regulation. (Rausch .. Hartmann, 2018)

Downloads

Design: 2 conditions

Condition num. replicates Culture conditions Developmental stage Organism part Sex
germ-free host 3 germ-free host adult whole organism female and male
specific pathogen-free host 3 specific pathogen-free host adult whole organism female and male

Other

These studies are available in ENA, and the reads successfully align to our genomes.
We have decided not to include them in our analysis.
Either they failed to meet minimal criteria for inclusion, we've been asked to exclude them for data quality reasons, or we were unable to interpret the metadata.

SRP040266: Exosomes secreted by a nematode parasite transfer small RNAs to mammalian cells and regulate genes of the innate immune system [Heligmosomoides polygyrus]

Centre for Immunity, Infection and Evolution

Exosomes secreted by nematode parasites transfer small RNAs to mammalian cells and modulate innate immunity. (Buck .. Maizels, 2014)

1 run in ENA