Heterodera glycines - public RNASeq studies
Table of Contents
Analysed
SRP122521: Heterodera glycines de novo transcriptome assembly
University of Missouri - Columbia
Design: 3 conditions
Condition | num. replicates | Developmental stage | Host compatibility | Host | Geographic location | Isolate | Isolation source |
---|---|---|---|---|---|---|---|
parasitic juvenile, compatible host | 3 | parasitic second-stage juvenile | compatible host | Glycine max | USA | PA3 | greenhouse population |
parasitic juvenile, resistant host | 3 | parasitic second-stage juvenile | resistant host | Glycine max | USA | PA3 | greenhouse population |
pre-parasitic juvenile | 3 | pre-parasitic second-stage juvenile | Glycine max | USA | PA3 | greenhouse population |
Other
These studies are available in ENA, and the reads successfully align to our genomes.
We have decided not to include them in our analysis.
Either they failed to meet minimal criteria for inclusion, we've been asked to exclude them for data quality reasons, or we were unable to interpret the metadata.
SRP124653: Novel RNA viruses within plant parasitic cyst nematodes
North Carolina State University
2 runs in ENA
SRP194034: Heterodera glycines strain:X12 Raw sequence reads
Institute of Industrial Crops
2 runs in ENA