WormBase ParaSite HomeVersion: WBPS15 (WS276)
RNASeq Heterodera glycines

Heterodera glycines - public RNASeq studies

Analysed

SRP122521: Heterodera glycines de novo transcriptome assembly

University of Missouri - Columbia

Novel global effector mining from the transcriptome of early life stages of the soybean cyst nematode Heterodera glycines. (Gardner .. Mitchum, 2018)

Design: 3 conditions

Condition num. replicates Developmental stage Host compatibility Host Geographic location Isolate Isolation source
parasitic juvenile, compatible host 3 parasitic second-stage juvenile compatible host Glycine max USA PA3 greenhouse population
parasitic juvenile, resistant host 3 parasitic second-stage juvenile resistant host Glycine max USA PA3 greenhouse population
pre-parasitic juvenile 3 pre-parasitic second-stage juvenile Glycine max USA PA3 greenhouse population

Other

These studies are available in ENA, and the reads successfully align to our genomes.
We have decided not to include them in our analysis.
Either they failed to meet minimal criteria for inclusion, we've been asked to exclude them for data quality reasons, or we were unable to interpret the metadata.

SRP124653: Novel RNA viruses within plant parasitic cyst nematodes

North Carolina State University

2 runs in ENA

SRP194034: Heterodera glycines strain:X12 Raw sequence reads

Institute of Industrial Crops

2 runs in ENA