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RNASeq Hymenolepis microstoma

Hymenolepis microstoma - public RNASeq studies


ERP004459: Analysis of RNA expression in tapeworm species

Wellcome Sanger Institute

Project to investigate gene and small RNA expression of tapeworms (including Echinococcus multilocularis, E. granulosus, Hymenolepis microstoma).
Genome-wide transcriptome profiling and spatial expression analyses identify signals and switches of development in tapeworms. (Olson .. Berriman, 2018)

Design: 5 conditions

Condition num. replicates Developmental stage Organism part Strain
Adult, mid-section 3 adult mid strobila region Nottingham
Adult, posterior 3 adult posterior strobila region Nottingham
Adult, scolex 3 adult neck/scolex region Nottingham
Adult, whole 3 adult whole organism Nottingham
mid-metamorphosis larvae 3 larva whole organism Nottingham


These studies are available in ENA, and the reads successfully align to our genomes.
We have decided not to include them in our analysis.
Either they failed to meet minimal criteria for inclusion, we've been asked to exclude them for data quality reasons, or we were unable to interpret the metadata.

ERP001238: Transcriptome sequencing of Hymenolepis microstoma a classic laboratory model in cestodology

Wellcome Sanger Institute

2 runs in ENA