Schistosoma japonicum - public RNASeq studies
Table of Contents
- Dynamic transcriptome surveys revealed that biogenic amines and insect-like hormonal regulation are involved in Schistosoma japonicum pairing and reproductive development
- Transcriptome analysis of females and males following knockdown serine/threonine protein phosphatase 1 catalytic subunit encoding genes(Sj-pp1c) in Schistosoma japonicum
- Schistosoma japonicum Transcriptome or Gene expression
- Genome sequencing of clonal Schistosoma japonicum
- 3 other studies
Analysed
SRP090154: Dynamic transcriptome surveys revealed that biogenic amines and insect-like hormonal regulation are involved in Schistosoma japonicum pairing and reproductive development
National Institute of Parasitic Diseases, Chinese Center for Disease Control and Prevention
Design: 16 conditions
Condition | num. replicates | Age | Organism part | Sex | Strain |
---|---|---|---|---|---|
14 days, female | 3 | 14 days | whole organism | female | Anhui |
14 days, male | 3 | 14 days | whole organism | male | Anhui |
16 days, female | 3 | 16 days | whole organism | female | Anhui |
16 days, male | 3 | 16 days | whole organism | male | Anhui |
18 days, female | 3 | 18 days | whole organism | female | Anhui |
18 days, male | 3 | 18 days | whole organism | male | Anhui |
20 days, female | 3 | 20 days | whole organism | female | Anhui |
20 days, male | 3 | 20 days | whole organism | male | Anhui |
22 days, female | 3 | 22 days | whole organism | female | Anhui |
22 days, male | 3 | 22 days | whole organism | male | Anhui |
24 days, female | 3 | 24 days | whole organism | female | Anhui |
24 days, male | 3 | 24 days | whole organism | male | Anhui |
26 days, female | 3 | 26 days | whole organism | female | Anhui |
26 days, male | 3 | 26 days | whole organism | male | Anhui |
28 days, female | 3 | 28 days | whole organism | female | Anhui |
28 days, male | 3 | 28 days | whole organism | male | Anhui |
SRP128030: Transcriptome analysis of females and males following knockdown serine/threonine protein phosphatase 1 catalytic subunit encoding genes(Sj-pp1c) in Schistosoma japonicum
State Key Laboratory of Agricultural Microbiology, College of Veterinary Medicine, Huazhong Agricultural University
Design: 4 conditions
Condition | num. replicates | Developmental stage | Organism part | Sex | Strain background | Treatment |
---|---|---|---|---|---|---|
female | 3 | 21 days post infection | whole organism | female | Jiangsu | |
female, Sj-pp1c knockdown | 3 | 21 days post infection | whole organism | female | Jiangsu | Sj-pp1c knockdown |
male | 3 | 21 days post infection | whole organism | male | Jiangsu | |
male, Sj-pp1c knockdown | 3 | 21 days post infection | whole organism | male | Jiangsu | Sj-pp1c knockdown |
SRP168979: Schistosoma japonicum Transcriptome or Gene expression
Shanghai veterinary research institute of Chinese academy of agricultural sciences
Design: 2 conditions
Condition | num. replicates | Isolate | Collection date | Geographic location | Host | Organism part |
---|---|---|---|---|---|---|
Primary infection | 3 | Primary infection | 26-Dec-17 | China:jiangsu | Water Buffalo | adult worm |
re-infection | 3 | re-infection | 26-Dec-17 | China:jiangsu | Water Buffalo | adult worm |
SRP179824: Genome sequencing of clonal Schistosoma japonicum
Fudan University
Design: 3 conditions
Condition | num. replicates | Developmental stage | Sex |
---|---|---|---|
adult | 1 | adult | pooled male and female |
cercariae | 1 | cercariae | |
sporocyst | 1 | sporocyst |
Other
These studies are available in ENA, and the reads successfully align to our genomes.
We have decided not to include them in our analysis.
Either they failed to meet minimal criteria for inclusion, we've been asked to exclude them for data quality reasons, or we were unable to interpret the metadata.
ERP105127: Here we use subtractive RNASeq to characterise the genes encoding the principal secretory products of S. japonicum esophageal glands, preparatory to evaluating their relevance as targets of the self-cure process.
York
3 runs in ENA
SRP043313: Genome-wide transcriptome analysis revealed extensive alternative RNA splicing in gene expression in the zoonotic parasite Schistosoma japonicum
Laboratory of Parasitology, Institute of Pathogen Biology, Chinese Academy of Medical Sciences and Peking Union Medical College
2 runs in ENA
SRP061588: transcriptome of vertebrate stages of Schistosoma japonicum
Institute for Infectious Diseases and Vaccine Development
1 run in ENA