Schistosoma japonicum - public RNASeq studies
Table of Contents
- Dynamic transcriptome surveys revealed that biogenic amines and insect-like hormonal regulation are involved in Schistosoma japonicum pairing and reproductive development
- Transcriptome analysis of females and males following knockdown serine/threonine protein phosphatase 1 catalytic subunit encoding genes(Sj-pp1c) in Schistosoma japonicum
- Schistosoma japonicum Transcriptome or Gene expression
- 5 other studies
Analysed
SRP090154: Dynamic transcriptome surveys revealed that biogenic amines and insect-like hormonal regulation are involved in Schistosoma japonicum pairing and reproductive development
National Institute of Parasitic Diseases, Chinese Center for Disease Control and Prevention
Design: 16 conditions
| Condition | num. replicates | Age | Organism part | Sex | Strain |
|---|---|---|---|---|---|
| 14 days, female | 3 | 14 days | whole organism | female | Anhui |
| 14 days, male | 3 | 14 days | whole organism | male | Anhui |
| 16 days, female | 3 | 16 days | whole organism | female | Anhui |
| 16 days, male | 3 | 16 days | whole organism | male | Anhui |
| 18 days, female | 3 | 18 days | whole organism | female | Anhui |
| 18 days, male | 3 | 18 days | whole organism | male | Anhui |
| 20 days, female | 3 | 20 days | whole organism | female | Anhui |
| 20 days, male | 3 | 20 days | whole organism | male | Anhui |
| 22 days, female | 3 | 22 days | whole organism | female | Anhui |
| 22 days, male | 3 | 22 days | whole organism | male | Anhui |
| 24 days, female | 3 | 24 days | whole organism | female | Anhui |
| 24 days, male | 3 | 24 days | whole organism | male | Anhui |
| 26 days, female | 3 | 26 days | whole organism | female | Anhui |
| 26 days, male | 3 | 26 days | whole organism | male | Anhui |
| 28 days, female | 3 | 28 days | whole organism | female | Anhui |
| 28 days, male | 3 | 28 days | whole organism | male | Anhui |
SRP128030: Transcriptome analysis of females and males following knockdown serine/threonine protein phosphatase 1 catalytic subunit encoding genes(Sj-pp1c) in Schistosoma japonicum
State Key Laboratory of Agricultural Microbiology, College of Veterinary Medicine, Huazhong Agricultural University
Design: 4 conditions
| Condition | num. replicates | Developmental stage | Organism part | Sex | Strain background | Treatment |
|---|---|---|---|---|---|---|
| female | 3 | 21 days post infection | whole organism | female | Jiangsu | |
| female, Sj-pp1c knockdown | 3 | 21 days post infection | whole organism | female | Jiangsu | Sj-pp1c knockdown |
| male | 3 | 21 days post infection | whole organism | male | Jiangsu | |
| male, Sj-pp1c knockdown | 3 | 21 days post infection | whole organism | male | Jiangsu | Sj-pp1c knockdown |
SRP168979: Schistosoma japonicum Transcriptome or Gene expression
Shanghai veterinary research institute of Chinese academy of agricultural sciences
Design: 2 conditions
| Condition | num. replicates | Isolate | Collection date | Geographic location | Host | Organism part |
|---|---|---|---|---|---|---|
| Primary infection | 3 | Primary infection | 26-Dec-17 | China:jiangsu | Water Buffalo | adult worm |
| re-infection | 3 | re-infection | 26-Dec-17 | China:jiangsu | Water Buffalo | adult worm |
Other
These studies are available in ENA, and the reads successfully align to our genomes.
They have not been included in our analysis for one of the following reasons:
Failed to meet minimal criteria for differential expression analysis, failure to pass data quality filters, or we were unable to interpret accompanying metadata.
ERP105127: Here we use subtractive RNASeq to characterise the genes encoding the principal secretory products of S. japonicum esophageal glands, preparatory to evaluating their relevance as targets of the self-cure process.
York
3 runs in ENA
SRP019769: Schistosoma japonicum Small RNA Transcriptome
Institute of Pathogen Biology, Chinese Academy of Medical Sciences
Profiles of small non-coding RNAs in Schistosoma japonicum during development. (Cai .. Chen, 2011)
1 run in ENA
SRP043313: Genome-wide transcriptome analysis revealed extensive alternative RNA splicing in gene expression in the zoonotic parasite Schistosoma japonicum
Laboratory of Parasitology, Institute of Pathogen Biology, Chinese Academy of Medical Sciences and Peking Union Medical College
2 runs in ENA
SRP061588: transcriptome of vertebrate stages of Schistosoma japonicum
Institute for Infectious Diseases and Vaccine Development
1 run in ENA
SRP179824: Genome sequencing of clonal Schistosoma japonicum
Fudan University
3 runs in ENA
Release 17 - July 2022
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