Strongyloides stercoralis - public RNASeq studies
Table of Contents
Analysed
ERP001556: RNAseq of S. stercoralis PV001 strain developmental stages
Penn Genome Frontiers Institute
RNAseq study to examine developmental regulation of S. stercoralis transcripts with a focus on infectious third-stage larvae
E-MTAB-1164 in ArrayExpress
Downloads
Characteristics and conditions per run
Counts of aligned reads per run (HTSeq2)
Gene expression (TPM) per run
Gene expression (TPM) per condition as median across runs
Differential expression
Design: 7 conditions
Condition | num. replicates | Developmental stage | Strain |
---|---|---|---|
Free-living females | 3 | Young gravid females | PV001 |
L3+ | 3 | Tissue migrating third stage larvae | PV001 |
L3i | 3 | Infectious third stage larvae | PV001 |
Parasitic females | 3 | Gravid parasitic females | PV001 |
Post free-living L1 | 3 | Post free living first stage larvae | PV001 |
Post parasitic L1 | 3 | Post parasitic first stage larvae | PV001 |
Post parasitic L3 | 3 | Post parasitic heterogonically developing ~third stage larvae | PV001 |
ERP004559: RNAseq of S. stercoralis PV001 strain L3i activation
Department of Biology, Hollins University
RNAseq study to examine regulation of S. stercoralis transcripts during L3i activation
E-MTAB-2192 in ArrayExpress
Downloads
Characteristics and conditions per run
Counts of aligned reads per run (HTSeq2)
Gene expression (TPM) per run
Gene expression (TPM) per condition as median across runs
Differential expression
Design: 5 conditions
Condition | num. replicates | Developmental stage | Strain | Treatment |
---|---|---|---|---|
8-bromo-3',5'-cyclic GMP | 4 | L3i | PV001 | 8-bromo-3',5'-cyclic GMP |
DMEM | 4 | L3i | PV001 | DMEM |
M9 buffer | 4 | L3i | PV001 | M9 buffer |
No treatment | 4 | L3i | PV001 | No treatment |
delta(7)-DA | 4 | L3i | PV001 | delta(7)-DA |