Teladorsagia circumcincta - public RNASeq studies
Table of Contents
Analysed
ERP008611: Teladorsagia circumcincta transcriptomics
Wellcome Sanger Institute
Design: 3 conditions
| Condition | num. replicates | Developmental stage | Organism part | Sex | Strain |
|---|---|---|---|---|---|
| L3 | 3 | L3 | whole organism | Tci2 | |
| adult, female | 3 | adult | whole organism | female | Tci2 |
| adult, male | 3 | adult | whole organism | male | Tci2 |
SRP067884: Genome sequencing of the drug resistant nematode Teladorsagia circumcincta.
The Genome Institute
Design: 2 conditions
| Condition | num. replicates | Isolate |
|---|---|---|
| antihelmintic resistant | 1 | antihelmintic resistant |
| antihelmintic susceptible | 1 | antihelmintic susceptible |
SRP096620: Teladorsagia circumcincta niche specific expression
Moredun Research Institute
Design: 2 conditions
| Condition | num. replicates | Developmental stage | Geographic location | Host | Host niche | Isolate | Isolation source | Organism part |
|---|---|---|---|---|---|---|---|---|
| Lumenal-derived larvae | 3 | L4 stage larvae | United Kingdom | Ovis aries | lumen | MTci-2_CVL | Abomasal washings samples | whole l4 stage teladorsagia larvae isolated from abomasal washings |
| Mucosal-derived larvae | 3 | L4 stage larvae | United Kingdom | Ovis aries | mucosa | MTci-2_CVL | Abomasal washings samples | whole l4 stage teladorsagia larvae isolated from abomasal washings |
Other
These studies are available in ENA, and the reads successfully align to our genomes.
We have decided not to include them in our analysis.
Either they failed to meet minimal criteria for inclusion, we've been asked to exclude them for data quality reasons, or we were unable to interpret the metadata.
SRP007648: Teladorsagia circumcincta Genome Sequencing
The Genome Institute
Parasitic Nematode Project Page
Project Information
Teladorsagia circumcincta Project page
2 runs in ENA
Release 15 - October 2020
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