Teladorsagia circumcincta - public RNASeq studies
Table of Contents
Analysed
ERP008611: Teladorsagia circumcincta transcriptomics
Wellcome Sanger Institute
Design: 3 conditions
| Condition | num. replicates | Developmental stage | Organism part | Sex | Strain |
|---|---|---|---|---|---|
| L3 | 3 | L3 | whole organism | Tci2 | |
| adult, female | 3 | adult | whole organism | female | Tci2 |
| adult, male | 3 | adult | whole organism | male | Tci2 |
SRP067884: Genome sequencing of the drug resistant nematode Teladorsagia circumcincta.
The Genome Institute
Design: 2 conditions
| Condition | num. replicates | Isolate |
|---|---|---|
| antihelmintic resistant | 1 | antihelmintic resistant |
| antihelmintic susceptible | 1 | antihelmintic susceptible |
SRP096620: Teladorsagia circumcincta niche specific expression
Moredun Research Institute
Design: 2 conditions
| Condition | num. replicates | Developmental stage | Geographic location | Host | Host niche | Isolate | Isolation source | Organism part |
|---|---|---|---|---|---|---|---|---|
| Lumenal-derived larvae | 3 | L4 stage larvae | United Kingdom | Ovis aries | lumen | MTci-2_CVL | Abomasal washings samples | whole l4 stage teladorsagia larvae isolated from abomasal washings |
| Mucosal-derived larvae | 3 | L4 stage larvae | United Kingdom | Ovis aries | mucosa | MTci-2_CVL | Abomasal washings samples | whole l4 stage teladorsagia larvae isolated from abomasal washings |
Other
These studies are available in ENA, and the reads successfully align to our genomes.
They have not been included in our analysis for one of the following reasons:
Failed to meet minimal criteria for differential expression analysis, failure to pass data quality filters, or we were unable to interpret accompanying metadata.
SRP007648: Teladorsagia circumcincta Genome Sequencing
The Genome Institute
Parasitic Nematode Project Page
Project Information
Teladorsagia circumcincta Project page
4 runs in ENA
Release 16 - September 2021
.
