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RNASeq Teladorsagia circumcincta

Teladorsagia circumcincta - public RNASeq studies

Analysed

ERP008611: Teladorsagia circumcincta transcriptomics

Wellcome Sanger Institute

Design: 3 conditions

Condition num. replicates Developmental stage Organism part Sex Strain
L3 3 L3 whole organism Tci2
adult, female 3 adult whole organism female Tci2
adult, male 3 adult whole organism male Tci2

SRP067884: Genome sequencing of the drug resistant nematode Teladorsagia circumcincta.

The Genome Institute

Design: 2 conditions

Condition num. replicates Isolate
antihelmintic resistant 1 antihelmintic resistant
antihelmintic susceptible 1 antihelmintic susceptible

SRP096620: Teladorsagia circumcincta niche specific expression

Moredun Research Institute

Design: 2 conditions

Condition num. replicates Developmental stage Geographic location Host Host niche Isolate Isolation source Organism part
Lumenal-derived larvae 3 L4 stage larvae United Kingdom Ovis aries lumen MTci-2_CVL Abomasal washings samples whole l4 stage teladorsagia larvae isolated from abomasal washings
Mucosal-derived larvae 3 L4 stage larvae United Kingdom Ovis aries mucosa MTci-2_CVL Abomasal washings samples whole l4 stage teladorsagia larvae isolated from abomasal washings

Other

These studies are available in ENA, and the reads successfully align to our genomes.
We have decided not to include them in our analysis.
Either they failed to meet minimal criteria for inclusion, we've been asked to exclude them for data quality reasons, or we were unable to interpret the metadata.

SRP007648: Teladorsagia circumcincta Genome Sequencing