WormBase ParaSite HomeVersion: WBPS14 (WS271)
RNASeq Toxocara canis

Toxocara canis - public RNASeq studies

Analysed

SRP051082: Toxocara canis isolate:PN_DK_2014 Genome sequencing and assembly

University of Melbourne

Genetic blueprint of the zoonotic pathogen Toxocara canis. (Zhu .. Gasser, 2015)

Design: 7 conditions

Condition num. replicates Sample description
L3 1 L3
female gut 1 female gut
female reproductive tract 1 female reproductive tract
female whole worm 1 female whole worm
male gut 1 male gut
male reproductive tract 1 male reproductive tract
male whole worm 1 male whole worm

Other

These studies are available in ENA, and the reads successfully align to our genomes.
We have decided not to include them in our analysis.
Either they failed to meet minimal criteria for inclusion, we've been asked to exclude them for data quality reasons, or we were unable to interpret the metadata.

SRP066833: Comparative transcriptomic analyses of male and female adult Toxocara canis.