Trichinella pseudospiralis - public RNASeq studies
Table of Contents
Analysed
SRP140458: Comparative multi-omic analyses of Trichinella Pseudospiralis based on a new genome assembly by long-read sequencing
Agricultural Genomes Institute at Shenzhen
Design: 3 conditions
| Condition | num. replicates | Developmental stage |
|---|---|---|
| adult | 1 | adult |
| muscle larva | 1 | muscle larva |
| newborn larva | 1 | newborn larva |
Other
These studies are available in ENA, and the reads successfully align to our genomes.
We have decided not to include them in our analysis.
Either they failed to meet minimal criteria for inclusion, we've been asked to exclude them for data quality reasons, or we were unable to interpret the metadata.
SRP045246: Annotated genomic assembly for each of the sixteen Trichinella species and genotypes
University of Melbourne
Phylogenomic and biogeographic reconstruction of the Trichinella complex. (Korhonen .. Gasser, 2016)
4 runs in ENA
Release 15 - October 2020
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