WormBase ParaSite HomeVersion: WBPS16 (WS279)
RNASeq Trichuris muris

Trichuris muris - public RNASeq studies

Analysed

ERP002000: Trichuris muris transcriptomics

Wellcome Sanger Institute

Design: 6 conditions

Condition num. replicates Developmental stage Organism part Strain
L2 1 L2 whole organism Edinburgh
L3 3 L3 whole organism Edinburgh
adult 7 adult whole organism Edinburgh
adult intestinal phase, front end 2 adult intestinal phase front end Edinburgh
adult intestinal phase, whole 1 adult intestinal phase whole organism Edinburgh
adult lumenal phase 6 adult lumenal phase back ends Edinburgh

Other

These studies are available in ENA, and the reads successfully align to our genomes.
They have not been included in our analysis for one of the following reasons:
Failed to meet minimal criteria for differential expression analysis, failure to pass data quality filters, or we were unable to interpret accompanying metadata.

SRP126569: mRNA data from extracellular vesicles secreted by Trichuris muris

Loukas Lab, AITHM, James Cook University

HASH(0x4de8c58) (Eichenberger .. Sotillo, 2018)

4 runs in ENA