Trichuris muris - public RNASeq studies
Table of Contents
ERP002000: Trichuris muris transcriptomics
Wellcome Sanger Institute
Design: 6 conditions
|Condition||num. replicates||Developmental stage||Organism part||Strain|
|adult intestinal phase, front end||2||adult intestinal phase||front end||Edinburgh|
|adult intestinal phase, whole||1||adult intestinal phase||whole organism||Edinburgh|
|adult lumenal phase||6||adult lumenal phase||back ends||Edinburgh|
These studies are available in ENA, and the reads successfully align to our genomes.
They have not been included in our analysis for one of the following reasons:
Failed to meet minimal criteria for differential expression analysis, failure to pass data quality filters, or we were unable to interpret accompanying metadata.
SRP126569: mRNA data from extracellular vesicles secreted by Trichuris muris
Loukas Lab, AITHM, James Cook University
HASH(0x4de8c58) (Eichenberger .. Sotillo, 2018)
4 runs in ENA