WormBase ParaSite HomeVersion: WBPS15 (WS276)
RNASeq Trichuris suis

Trichuris suis - public RNASeq studies


SRP033425: Trichuris suis isolate:DCEP-RM93M Genome sequencing

The University of Melbourne

Genome and transcriptome of the porcine whipworm Trichuris suis. (Jex .. Gasser, 2014)

Design: 3 conditions

Condition num. replicates Developmental stage Organism part
adult 2 adult
adult, large intestine 1 adult large intestine
large intestine 3 large intestine

SRP039506: Trichuris suis Genome sequencing

The Genome Institute

Parasitic Nematode Project Page

Design: 14 conditions

Condition num. replicates Developmental stage
10 day larvae 1 10 day larvae
16 day larvae 1 16 day larvae
17 day larvae 1 17 day larvae
21 day larvae 1 21 day larvae
28 day larvae 1 28 day larvae
35 day larvae 1 35 day larvae
42 day larvae 1 42 day larvae
adult (mixed gender) 2 adult (mixed gender)
female anterior body 1 female anterior body
female ovary 1 female ovary
male anterior body 1 male anterior body
male testis 1 male testis
pig intestine (female) 1 pig intestine (female)
pig intestine (male) 1 pig intestine (male)


These studies are available in ENA, and the reads successfully align to our genomes.
We have decided not to include them in our analysis.
Either they failed to meet minimal criteria for inclusion, we've been asked to exclude them for data quality reasons, or we were unable to interpret the metadata.

SRP126918: Transcriptome of female and male Trichuris suis

Rongchang campus of Southwest University

2 runs in ENA