WormBase ParaSite HomeVersion: WBPS14 (WS271)

Heterodera glycines

BioProject PRJNA381081 | Data Source Iowa State University | Taxonomy ID 51029

About Heterodera glycines

The soybean cyst nematode, Heterodera glycines, is a plant-parasitic nematode infecting soybean roots. SCN has threatened the U.S. crop since the 1950s, and is also a problem in soybean growing areas of Latin America and Asia.

Genome Assembly & Annotation

Assembly

The assembly was prepared using PacBio long reads. Manuscript in preparation (preprint).

Annotation

Gene models were obtained from AUGUSTUS predictions, guided by de novo evidence and available RNASeq data. Here we present a slightly filtered down version of the annotation published by authors on their site, http://scnbase.org .

Resources

http://scnbase.org/

Assembly Statistics

AssemblyHetgly_1, GCA_004148225.1
StrainTN10
Database VersionWBPS14
Genome Size123,846,405
Data SourceIowa State University
Annotation Version2019-02-WormBase

Gene counts

Coding genes29,679
Pseudogenes82
Gene transcripts32,253

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About this species