Heterodera glycines

Genome Assembly & Annotation

Assembly

The assembly was prepared using PacBio long reads. Manuscript in preparation (preprint).

Annotation

Gene models were obtained from AUGUSTUS predictions, guided by de novo evidence and available RNASeq data. Here we present a slightly filtered down version of the annotation published by authors on their site, http://scnbase.org .

Downloads

• Genomic Sequence (FASTA)
• Hard-masked Genomic Sequence (FASTA)
• Soft-masked Genomic Sequence (FASTA)
• Annotations (GFF3)
• Proteins (FASTA)
• Full-length transcripts (FASTA)
• CDS transcripts (FASTA)

Tools

• Search for sequences in the genome and proteome using BLAST
• Work with lists of data using the WormBase ParaSite BioMart data-mining tool
• Programatically access WormBase ParaSite data using the REST API
• Predict the effects of variants using the Variant Effect Predictor

Resources

http://scnbase.org/

Navigation

Genome Browser (JBrowse)

Genome Browser (Ensembl)

Example gene page

Example gene tree