Heterodera glycines

BioProject PRJNA381081 | Data Source Iowa State University | Taxonomy ID 51029

About Heterodera glycines

The soybean cyst nematode, Heterodera glycines, is a plant-parasitic nematode infecting soybean roots. SCN has threatened the U.S. crop since the 1950s, and is also a problem in soybean growing areas of Latin America and Asia.

Genome Assembly & Annotation

Assembly

The assembly was prepared using PacBio long reads. Manuscript in preparation (preprint).

Annotation

Gene models were obtained from AUGUSTUS predictions, guided by de novo evidence and available RNASeq data. Here we present a slightly filtered down version of the annotation published by authors on their site, http://scnbase.org .

Downloads

Tools

Resources

http://scnbase.org/

Navigation

Genome Browser (JBrowse)

Genome Browser (Ensembl)

Example gene page

Example gene tree

Gene Expression

Assembly Statistics

Assembly	Hetgly_1, GCA_004148225.1
Strain	TN10
Database Version	WBPS14
Genome Size	123,846,405
Data Source	Iowa State University
Annotation Version	2019-02-WormBase

Gene counts

Coding genes	29,679
Pseudogenes	82
Gene transcripts	32,253

Learn more about this widget in our help section

This widget has been derived from the assembly-stats code developed by the Lepbase project at the University of Edinburgh