Meloidogyne arenaria

BioProject PRJNA340324 | Data Source University of Hull | Taxonomy ID 6304

About Meloidogyne arenaria

The peanut root knot nematode, M. arenaria , is a plant pathogenic nematode, causing significant damage to crops of peanut, vegetables, grasses, fruit ornamentals and tobacco in the Southern United States.

There are 2 alternative genome projects for Meloidogyne arenaria available in WormBase ParaSite: PRJEB8714 PRJNA438575

Genome Assembly & Annotation

Assembly

The assembly was produced using Illumina reads, as described in Szitenberg et al. (2017)

Annotation

The annotation was produced using AUGUSTUS. WormBase obtained it from the authors' GitHub repository.

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Key Publications

Szitenberg A, Salazar-Jaramillo L, Blok VC, Laetsch DR, Joseph S, Williamson VM, Blaxter ML, Lunt DH. Comparative Genomics of Apomictic Root-Knot Nematodes: Hybridization, Ploidy, and Dynamic Genome Change. Genome Biol Evol, 2017;9(10):2844-2861

Navigation

Genome Browser (JBrowse)

Genome Browser (Ensembl)

Example gene page

Example gene tree

Gene Expression

Assembly Statistics

Assembly	ASM369356v1, GCA_003693565.1
Strain	HarA
Database Version	WBPS19
Genome Size	163,746,389
Data Source	University of Hull
Annotation Version	2019-01-WormBase

Gene counts

Coding genes	27,548
Pseudogenes	2,675
Gene transcripts	30,223

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