EMBL-EBI User Survey 2024

Do data resources managed by EMBL-EBI and our collaborators make a difference to your work?

Please take 10 minutes to fill in our annual user survey, and help us make the case for why sustaining open data resources is critical for life sciences research.

Survey link: https://www.surveymonkey.com/r/HJKYKTT?channel=[webpage]

WormBase ParaSite HomeVersion: WBPS19 (WS291)-  Archive: WBPS18

Panagrolaimus davidi

BioProject PRJEB32708 | Data Source University College London | Taxonomy ID 227884

About Panagrolaimus davidi

The Antarctic nematode Panagrolaimus davidi (also referred to as Panagrolaimus sp. DAW1) is remarkable for its ability to survive low sub-zero temperatures. When cooled quicky at very low temperatures, it can survive extensive intracellular freezing. When coooled slowly at higher temperatures. P. davidi undergoes cryoprotective dehydration (water loss to prevent freezing). This species reproduces through meiotic parthenogenesis.

Genome Assembly & Annotation


Short-insert Illumina reads were assembled with SPAdes and the redundans pipeline, as described by Schiffer et al., 2019.


Gene models were predicted with Augustus, as described by Schiffer et al., 2019.

Key Publications

Assembly Statistics

AssemblyPDA_v2, GCA_901779475.1
Database VersionWBPS19
Genome Size118,052,509
Data SourceUniversity College London
Annotation Version2020-03-WormBase

Gene counts

Coding genes25,806
Gene transcripts25,806

Learn more about this widget in our help section

This widget has been derived from the assembly-stats code developed by the Lepbase project at the University of Edinburgh