Trichinella pseudospiralis
BioProject PRJNA257433 | Data Source University of Melbourne | Taxonomy ID 6337
About Trichinella pseudospiralis
One of the Trichinella genus of parasitic nematodes, the causative agents of trichinosis (also known as trichinellosis). Trichinella pseudospiralis is a species which does not encapsulate in host muscle tissue and infects mammals and birds worldwide.
There are 4 alternative strains from this genome project for Trichinella pseudospiralis available in WormBase ParaSite: ISS13 ISS141 ISS176 ISS470
Genome Assembly & Annotation
Assembly
This genome was produced by the Gasser laboratory at the University of Melbourne, as part of the assembly and analysis of all 12 recognized Trichinella species (described in Korhonen et al (2016)). This strain, ISS588, had a brown rat from Russia as its original host.
Annotation
The gene predictions were made by the Gasser laboratory at the University of Melbourne.
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Key Publications
- Korhonen PK, Pozio E, La Rosa G, Chang BC, Koehler AV, Hoberg EP, Boag PR, Tan P, Jex AR, Hofmann A, Sternberg PW, Young ND, Gasser RB. Phylogenomic and biogeographic reconstruction of the Trichinella complex. Nat Commun, 2016;7():10513
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Assembly Statistics
| Assembly | T4_ISS588_r1.0, GCA_001447725.1 |
| Strain | ISS588 |
| Database Version | WBPS19 |
| Genome Size | 48,106,863 |
| Data Source | University of Melbourne |
| Annotation Version | 2016-05-WormBase |
Gene counts
| Coding genes | 13,717 |
| Gene transcripts | 17,158 |
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