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Comparative Genomics

For full details of The protein tree pipeline and the subsequent prediction of homologues, see the Ensembl Compara documentation.

This page provides a summary of the Ensembl phylogenetic analysis of protein families. The following views are available:

Overall Summary

Legend
Internal nodes (ancestral taxa) Node types Speciations Duplications Dubious nodes
Leaves (extant species) Gene tree coverage Genes in multi-species trees Genes in single-species trees Orphaned genes
Gene QC Validated genes Short genes Long genes Split genes
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Schizosaccharomyces pombe 972h-
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Saccharomyces cerevisiae S288C
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-
Rattus norvegicus strain BN/NHsdMcwi
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Mus musculus reference (CL57BL6) strain
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Homo sapiens
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Danio rerio
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Ciona intestinalis
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-
Drosophila melanogaster
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Ixodes scapularis strain Wikel
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-
Spirometra erinaceieuropaei (PRJEB1202)
---------------------------------
----
Schistocephalus solidus strain NST_G2 (PRJEB527)
--------------------
Dibothriocephalus latus (PRJEB1206)
----------------
-
Rodentolepis nana strain Japan (PRJEB508)
----------------------------
----
Hymenolepis microstoma (PRJEB124)
-----------------------
Hymenolepis diminuta strain laboratory inbred isolate (PRJEB30942)
-----------------------------
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-
Echinococcus granulosus strain G1 (PRJNA182977)
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----
----
Echinococcus granulosus strain G1 (PRJEB121)
-------------------------
--------
Echinococcus multilocularis strain Java (PRJEB122)
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Echinococcus canadensis (PRJEB8992)
----------------------------------------
Echinococcus oligarthrus strain DaMi1 (PRJEB31222)
----------------
----
----
-
Taenia asiatica strain TASYD01 (PRJNA299871)
----------------------
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Taenia saginata strain TSAYD01 (PRJNA71493)
----------------------
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Taenia multiceps strain Gns01 (PRJNA307624)
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Taenia solium strain Mexico (PRJNA170813)
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Hydatigera taeniaeformis strain Spain/Canary Islands (PRJEB534)
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----------------------------
Mesocestoides corti strain Specht & Voge 1965 (PRJEB510)
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-
Gyrodactylus salaris strain Lier (PRJNA244375)
-------------------------------------------------------
----
Gyrodactylus bullatarudis strain Rox2016 (PRJNA532341)
--------------------------
Protopolystoma xenopodis (PRJEB1201)
------------------------------------------
-
Schistosoma mansoni (PRJEA36577)
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Schistosoma rodhaini strain tdSchRodh1.1 (PRJEB44434)
-------------------------
-
Schistosoma bovis strain tdSchBovi1.1 (PRJEB44434)
----------------------
----
----
Schistosoma curassoni strain tdSchCurr1.1 (PRJEB44434)
----------------------------
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Schistosoma guineensis strain tdSchGuin1.1 (PRJEB44434)
----------------------------
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Schistosoma haematobium (PRJNA78265)
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----
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Schistosoma intercalatum strain tdSchInte1.1 (PRJEB44434)
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Schistosoma mattheei strain tdSchMatt1.1 (PRJEB44434)
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-----------------------
-
Schistosoma spindale strain tdSchSpin1.1 (PRJEB44434)
----------------------------
Schistosoma margrebowiei strain tdSchMarg1.1 (PRJEB44434)
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-----------------------------------
Schistosoma turkestanicum strain tdSchTurk1.1 (PRJEB44434)
-----------------------------------------
---------------------------------------------
Schistosoma japonicum strain HuSjv2 (PRJNA520774)
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-------------------
-
Trichobilharzia szidati strain tdTriSzid1.1 (PRJEB44434)
--------------------------------------------------------
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Trichobilharzia regenti strain tdTriRege1.1 (PRJEB44434)
--------------------------------
Heterobilharzia americana strain tdHetHame1.1 (PRJEB44434)
----------------------
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-
Fasciola hepatica Fasciola_10x_pilon (PRJEB25283)
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Fasciola hepatica F_hepatica_1.0.allpaths.pg (PRJNA179522)
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Fasciola gigantica strain Uganda_cow_1 (PRJNA230515)
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Echinostoma caproni strain Egypt (PRJEB1207)
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Fasciolopsis buski strain HT (PRJNA284521)
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Dicrocoelium dendriticum strain tdDicDend1.1 (PRJEB44434)
------------------------------------------
----
-
Opisthorchis felineus strain AK-0245 (PRJNA413383)
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Opisthorchis viverrini (PRJNA222628)
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Clonorchis sinensis strain Cs-k2 (PRJNA386618)
----------------------
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Paragonimus westermani (PRJNA454344)
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Atriophallophorus winterbourni strain NZ2018 (PRJNA636673)
-------------------------------------------------------------------
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Macrostomum lignano strain DV1 (PRJNA371498)
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Schmidtea mediterranea strain S2F19 (PRJNA885486)
-------------------------------
-
Trichinella nelsoni strain ISS37 (PRJNA257433)
----------------------
Trichinella spiralis strain ISS 195 (PRJNA12603)
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--------
-
Trichinella sp. T6 strain ISS34 (PRJNA257433)
-------------------------
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Trichinella nativa strain ISS10 (PRJNA257433)
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Trichinella sp. T9 strain ISS409 (PRJNA257433)
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Trichinella murrelli strain ISS417 (PRJNA257433)
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-
Trichinella britovi strain ISS120 (PRJNA257433)
-------------------------------
Trichinella sp. T8 strain ISS272 (PRJNA257433)
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Trichinella patagoniensis strain ISS2496 (PRJNA257433)
----------------------
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-
Trichinella zimbabwensis strain ISS1029 (PRJNA257433)
----------------------------------------
----
Trichinella papuae strain ISS1980 (PRJNA257433)
--------------------------------
Trichinella pseudospiralis strain ISS13 (PRJNA257433)
----------------------
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-
Trichuris trichiura strain Republic of Ecuador (PRJEB535)
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Trichuris suis (PRJNA179528)
------------------------------------------------------------------
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Trichuris muris (PRJEB126)
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Soboliphyme baturini strain Alaska/Dall Island (PRJEB516)
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Romanomermis culicivorax (PRJEB1358)
-----------------------------------------------------------------
-
Enterobius vermicularis strain Spain/Canary Islands (PRJEB503)
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Syphacia muris strain Spain/Valencia (PRJEB524)
----------------
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-
Brugia malayi strain FR3 (PRJNA10729)
-------------------------
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Brugia timori strain Flores island/ Indonesia (PRJEB4663)
-------------------------
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Brugia pahangi strain Scotland/Glasgow (PRJEB497)
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Wuchereria bancrofti strain pt0022 (PRJNA275548)
----------------------------------------
Loa loa strain CAT (PRJNA246086)
-------------------------
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-
Acanthocheilonema viteae (PRJEB1697)
-
----------------------------
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Cercopithifilaria johnstoni (PRJEB47283)
----------------------------------------------
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Litomosoides sigmodontis strain Bain lab strain (PRJEB3075)
----------------------------
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Elaeophora elaphi (PRJEB502)
----------------------------------
-
Onchocerca volvulus strain O. volvulus Cameroon isolate (PRJEB513)
----------------------------
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Onchocerca ochengi strain Ngaoundere (PRJEB1204)
------------------------------------------
--------
Onchocerca flexuosa strain Red Deer (PRJNA230512)
----------------------------
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Dirofilaria immitis (PRJEB1797)
----------------------------
-------------------------------
Thelazia callipaeda strain Switzerland/Ticino (PRJEB1205)
----------------------------
-----------------------------------
Gongylonema pulchrum strain Japan/Hokkaido (PRJEB505)
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Dracunculus medinensis (PRJEB500)
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Setaria digitata strain RSCHEM2018 (PRJNA479729)
-------------------------
----
-
Parascaris univalens strain PG01 (PRJNA386823)
----------------------------
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Parascaris equorum (PRJEB514)
----------------------------
----
-
Ascaris suum strain AG01 (PRJNA62057)
-------------------------------------------------
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Ascaris lumbricoides strain Republic of Ecuador (PRJEB4950)
------------------------------------
Toxocara canis strain PN_DK_2014 (PRJNA248777)
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Anisakis simplex (PRJEB496)
-------------------------
-
Pristionchus exspectatus (PRJEB46690)
-------------------------
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Pristionchus pacificus strain PS312 (PRJNA12644)
-------------------------
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Pristionchus arcanus (PRJEB27334)
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Pristionchus maxplancki (PRJEB27334)
-------------------------
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Pristionchus japonicus (PRJEB27334)
-------------------------
--------------------
Pristionchus mayeri (PRJEB27334)
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Pristionchus entomophagus (PRJEB27334)
-------------------------
----------------------------
Pristionchus fissidentatus (PRJEB27334)
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--------------------------------
Parapristionchus giblindavisi (PRJEB53331)
------------------------------------------------------------
Micoletzkya japonica (PRJEB27334)
----------------------------
-
Caenorhabditis panamensis (PRJEB28259)
----------------------------
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Caenorhabditis waitukubuli strain NIC564 (PRJEB12602)
----------------------------
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Caenorhabditis becei strain QG2083 (PRJEB28243)
----------------
------------------
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Caenorhabditis sulstoni strain JU2788 (PRJEB12601)
-------------------
----------------------
Caenorhabditis japonica (PRJNA12591)
-------------------------------------------
-
Caenorhabditis tropicalis (PRJNA53597)
----------------------------------
Caenorhabditis brenneri (PRJNA20035)
----------------------------
----
----
-
Caenorhabditis remanei strain PX506 (PRJNA577507)
--------------------------------------------
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Caenorhabditis remanei C_remanei-15.0.1 (PRJNA53967)
----------
-------------------------
--------
Caenorhabditis latens (PRJNA248912)
-----------------------------------------
-
Caenorhabditis briggsae (PRJNA10731)
----------------------------
----
----
Caenorhabditis nigoni strain JU1422 (PRJNA384657)
-------------------------
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-
Caenorhabditis zanzibari strain JU2190 (PRJEB12596)
----------------------------------
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Caenorhabditis tribulationis strain JU2818 (PRJEB12608)
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Caenorhabditis sinica (PRJNA194557)
----------------------
----
-----------------------
-
Caenorhabditis inopinata (PRJDB5687)
-------------------------------------
Caenorhabditis elegans strain N2 (PRJNA13758)
----------------------------
-----------------------------------
Caenorhabditis uteleia strain JU2585 (PRJEB12600)
--------------------------------------------------------------
-
Caenorhabditis angaria (PRJNA51225)
----------------------------
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Caenorhabditis quiockensis strain JU2809 (PRJEB11354)
-------
----------------------
-------------------------------------------
Caenorhabditis bovis (PRJEB34497)
-------------------------------
-----------------------------------------------
Caenorhabditis auriculariae strain NKZ352 (PRJEB40642)
---------------------------------------------------------------------------------
Caenorhabditis parvicauda (PRJEB12595)
-------------------------------
------------------------------------------------
-
Diploscapter pachys strain PF1309 (PRJNA280107)
-------------------------------------
Diploscapter coronatus strain PDL0010 (PRJDB3143)
-------------------------------
----------------------------------------------------
-
Oscheius tipulae strain CEW1 (PRJNA644888)
-------------------------------------
Oscheius tipulae Oscheius_tipulae_assembly_v2 (PRJEB15512)
------------------------------------------------------------------------------------------
Mesorhabditis belari (PRJEB30104)
----------------------------------
-
Ancylostoma duodenale strain Baltimore (PRJNA72581)
--------------------------------------
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Ancylostoma caninum strain Baltimore (PRJNA72585)
-----------------------------------------
Ancylostoma ceylanicum strain HY135 (PRJNA231479)
----------------------------------
----
-
Strongylus vulgaris strain USA/Kentucky (PRJEB531)
----------------------------------------
----
Cylicostephanus goldi strain England/Cheshire (PRJEB498)
----------------------------
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--------
Oesophagostomum dentatum strain OD-Hann (PRJNA72579)
----------------------
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Necator americanus strain N. amaericanus Hunan isolate (PRJNA72135)
----------------------------------
-
Haemonchus contortus (PRJEB506)
----------------------------------
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Haemonchus placei strain MHpl1 (PRJEB509)
-----------------------------------
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Teladorsagia circumcincta (PRJNA72569)
----------------------------
--------
-
Heligmosomoides polygyrus (PRJEB15396)
----------------------------------
Nippostrongylus brasiliensis (PRJEB511)
----------------------------------
-
Angiostrongylus vasorum strain ZH-2019-22 (PRJNA663250)
---------------------------------------------------------
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----
Angiostrongylus costaricensis strain Costa Rica (PRJEB494)
------------------------------------
--------
Angiostrongylus cantonensis strain Guangzhou (PRJNA350391)
------------------------------------
Dictyocaulus viviparus (PRJNA72587)
-------------------------------------------------
Heterorhabditis bacteriophora strain M31e (PRJNA13977)
----------------
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-
Steinernema feltiae strain NW (PRJNA353610)
----------------------
----
Steinernema monticolum (PRJNA205067)
------------------------------------------------------
----
-
Steinernema scapterisci (PRJNA204942)
----------------------------
Steinernema carpocapsae (PRJNA202318)
---------------------------------
Steinernema glaseri (PRJNA204943)
-------------------------
-
Strongyloides papillosus strain LIN (PRJEB525)
-------------------------
----
Strongyloides venezuelensis (PRJEB530)
-------------------------
----
-
Strongyloides ratti (PRJEB125)
---------------------------------------
----------------------------
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Strongyloides stercoralis strain PV0001 (PRJEB528)
------------------------------------
Parastrongyloides trichosuri strain KNP (PRJEB515)
----
-------------------------------
Rhabditophanes sp. KR3021 strain kr 3021 (PRJEB1297)
----------------------
-
Panagrolaimus davidi (PRJEB32708)
----------------------
----
Panagrolaimus sp. PS1159 (PRJEB32708)
----------------------
----
-
Panagrolaimus superbus (PRJEB32708)
----------------
----------
Panagrolaimus sp. ES5 (PRJEB32708)
-------------------
------------
Panagrolaimus sp. JU765 (PRJEB32708)
-------------------------
Halicephalobus sp. NKZ332 (PRJNA555616)
-----------------------------------
------------
-
Halicephalobus mephisto (PRJNA528747)
-------------------------
Panagrellus redivivus (PRJNA186477)
--------------------------------------
Acrobeloides nanus (PRJEB26554)
----------------------
-
Bursaphelenchus xylophilus strain Ka4C1 (PRJEB40022)
----------------
----
----
Bursaphelenchus xylophilus ASM23113v1_submitted (PRJEA64437)
---------------------------------------
--------
Bursaphelenchus okinawaensis strain SH1 (PRJEB40023)
-------------------------
-
Aphelenchoides besseyi strain APVT (PRJNA834627)
----------------------
----
Aphelenchoides fujianensis strain Dali (PRJNA834627)
--------------------------
Aphelenchoides bicaudatus strain Fsh (PRJNA834627)
----------------
----------------------------
-
Ditylenchus destructor strain Dd01 (PRJNA312427)
----------------------
Ditylenchus dipsaci strain pooled J2 (PRJNA498219)
----------------------
-
Meloidogyne floridensis strain SJF1 (PRJNA340324)
----------------------
----
Meloidogyne incognita (PRJEB8714)
----------------
----
----
-
Meloidogyne arenaria strain A2-O Okinawa_01 (PRJNA438575)
-------------------
-------
Meloidogyne javanica strain VW4 (PRJNA340324)
-------------------
---------------
Meloidogyne enterolobii strain L30 (PRJNA340324)
-------------------
-------------------
Meloidogyne hapla strain VW9 (PRJNA29083)
-----------------------------------------
Meloidogyne graminicola (PRJNA411966)
----------------
------------------------
Meloidogyne chitwoodi strain Race1 (PRJNA666745)
-----------------------
-
Heterodera glycines strain TN10 (PRJNA381081)
----------------------------
----
Heterodera schachtii strain Bonn (PRJNA722882)
-------------------
-
Globodera pallida strain Lindley (PRJEB123)
----------------
----
Globodera pallida strain D383 (PRJNA764088)
--------------------
Globodera rostochiensis strain Ro1 (PRJEB13504)
-----------------------------------------------------------------------------------------
Plectus sambesii strain ES601 (PRJNA390260)
--------------------------------------------------------------------------------------------------
-
Crassostrea gigas
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Capitella teleta
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Nematostella vectensis strain CH2 x CH6
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Trichoplax adhaerens strain Grell-BS-1999
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Amphimedon queenslandica