WormBase ParaSite HomeVersion: WBPS10 (WS263)

Comparative Genomics

For full details of The protein tree pipeline and the subsequent prediction of homologues, see the Ensembl Compara documentation.

This page provides a summary of the Ensembl phylogenetic analysis of protein families. The following views are available:

Overall Summary

Legend
Internal nodes (ancestral taxa) Node types Speciations Duplications Dubious nodes
Leaves (extant species) Gene tree coverage Genes in multi-species trees Genes in single-species trees Orphaned genes
Gene QC Validated genes Short genes Long genes Split genes
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Crassostrea gigas
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Capitella teleta
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-
Onchocerca ochengi (PRJEB1809)
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Onchocerca ochengi Ngaoundere (PRJEB1204)
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Onchocerca volvulus O. volvulus Cameroon isolate (PRJEB513)
-----------
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Onchocerca flexuosa Spain/Cordoba (PRJEB512)
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Dirofilaria immitis (PRJEB1797)
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-
Loa loa L. loa Cameroon isolate (PRJNA60051)
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----
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Loa loa (PRJNA246086)
-----------------------
-
Wuchereria bancrofti pt0022 (PRJNA275548)
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Wuchereria bancrofti (PRJEB536)
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-
Brugia malayi FR3 (PRJNA10729)
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-------
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Brugia timori Flores island/ Indonesia (PRJEB4663)
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Brugia pahangi Scotland/Glasgow (PRJEB497)
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-
Acanthocheilonema viteae (PRJEB4306)
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Litomosoides sigmodontis Bain lab strain (PRJEB3075)
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Elaeophora elaphi (PRJEB502)
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Thelazia callipaeda Switzerland/Ticino (PRJEB1205)
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Gongylonema pulchrum Japan/Hokkaido (PRJEB505)
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Dracunculus medinensis (PRJEB500)
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Toxocara canis Brazil/Equador (PRJEB533)
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Toxocara canis PN_DK_2014 (PRJNA248777)
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Parascaris univalens (PRJNA386823)
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Parascaris equorum (PRJEB514)
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Ascaris suum (PRJNA62057)
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Ascaris suum A. suum Australian isolate (PRJNA80881)
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Ascaris lumbricoides Republic of Ecuador (PRJEB4950)
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Anisakis simplex (PRJEB496)
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Enterobius vermicularis Spain/Canary Islands (PRJEB503)
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Syphacia muris Spain/Valencia (PRJEB524)
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Pristionchus pacificus PS312 (PRJNA12644)
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Pristionchus exspectatus RS5522B (PRJEB6009)
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-
Strongylus vulgaris USA/Kentucky (PRJEB531)
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Cylicostephanus goldi England/Cheshire (PRJEB498)
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Oesophagostomum dentatum OD-Hann (PRJNA72579)
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Necator americanus N. amaericanus Hunan isolate (PRJNA72135)
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Ancylostoma ceylanicum HY135 (PRJNA231479)
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Ancylostoma ceylanicum (PRJNA72583)
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Ancylostoma caninum Baltimore (PRJNA72585)
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Ancylostoma duodenale Baltimore (PRJNA72581)
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-
Haemonchus contortus H. contortus Australian isolate (PRJNA205202)
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Haemonchus contortus MHco3 (PRJEB506)
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Haemonchus placei MHpl1 (PRJEB509)
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Teladorsagia circumcincta (PRJNA72569)
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-
Heligmosomoides polygyrus (PRJEB15396)
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Heligmosomoides polygyrus Scotland/Edinburgh (PRJEB1203)
-----------------------------
Nippostrongylus brasiliensis (PRJEB511)
-----------------------
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-
Angiostrongylus costaricensis Costa Rica (PRJEB494)
-------------------------------------
----
Angiostrongylus cantonensis Republic of China (PRJEB493)
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-
Dictyocaulus viviparus (PRJNA72587)
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Dictyocaulus viviparus (PRJEB5116)
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Heterorhabditis bacteriophora M31e (PRJNA13977)
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-
Diploscapter pachys PF1309 (PRJNA280107)
----------------------
Diploscapter coronatus PDL0010 (PRJDB3143)
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Caenorhabditis nigoni JU1422 (PRJNA384657)
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----------
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Caenorhabditis briggsae (PRJNA10731)
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----
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Caenorhabditis sinica (PRJNA194557)
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Caenorhabditis remanei (PRJNA53967)
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-
Caenorhabditis tropicalis (PRJNA53597)
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Caenorhabditis brenneri (PRJNA20035)
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Caenorhabditis elegans N2 (PRJNA13758)
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Caenorhabditis japonica (PRJNA12591)
----------------------------------------
Caenorhabditis angaria (PRJNA51225)
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-
Strongyloides venezuelensis (PRJEB530)
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Strongyloides papillosus LIN (PRJEB525)
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Strongyloides stercoralis PV0001 (PRJEB528)
--------------------
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Strongyloides ratti (PRJEB125)
------------------------------
Parastrongyloides trichosuri KNP (PRJEB515)
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Rhabditophanes sp. KR3021 kr 3021 (PRJEB1297)
----------------------
-
Steinernema feltiae (PRJNA204661)
--------------------------------
----
----
Steinernema monticolum (PRJNA205067)
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----
-
Steinernema scapterisci (PRJNA204942)
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Steinernema carpocapsae (PRJNA202318)
---------------------------------
Steinernema glaseri (PRJNA204943)
----------------------------------
Panagrellus redivivus (PRJNA186477)
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----
-
Meloidogyne floridensis (PRJEB6016)
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Meloidogyne incognita Morelos (PRJEA28837)
--------------------------
Meloidogyne hapla VW9 (PRJNA29083)
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-
Globodera rostochiensis Ro1 (PRJEB13504)
----------------
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Globodera pallida Lindley (PRJEB123)
---------------------------
Ditylenchus destructor Dd01 (PRJNA312427)
----------------------------
Bursaphelenchus xylophilus (PRJEA64437)
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Trichuris suis DCEP-RM93F (PRJNA208416)
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Trichuris suis DCEP-RM93M (PRJNA208415)
----------------
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Trichuris suis (PRJNA179528)
------------------------
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Trichuris trichiura Republic of Ecuador (PRJEB535)
-------------------------------
Trichuris muris Scotland/Edinburgh (PRJEB126)
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-
Trichinella sp. T9 ISS409 (PRJNA257433)
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Trichinella murrelli ISS417 (PRJNA257433)
----------------------
-
Trichinella sp. T8 ISS272 (PRJNA257433)
----------------
----
----
Trichinella britovi ISS120 (PRJNA257433)
----------------------------
-
Trichinella nativa ISS10 (PRJNA257433)
----------------------
----
----
Trichinella nativa (PRJNA179527)
--------------------------------
Trichinella sp. T6 ISS34 (PRJNA257433)
----------------------
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Trichinella patagoniensis ISS2496 (PRJNA257433)
----------------
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-
Trichinella spiralis ISS3 (PRJNA257433)
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Trichinella spiralis ISS 195 (PRJNA12603)
--------------------------------
Trichinella nelsoni ISS37 (PRJNA257433)
----------------------------
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-
Trichinella papuae ISS1980 (PRJNA257433)
----
-------------------------------
----
Trichinella zimbabwensis ISS1029 (PRJNA257433)
-----------------------------
Trichinella pseudospiralis ISS13 (PRJNA257433)
--------------------------------------------------
Soboliphyme baturini Alaska/Dall Island (PRJEB516)
---------------------------------------------------
Romanomermis culicivorax (PRJEB1358)
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-
Schistocephalus solidus NST_G2 (PRJEB527)
-----------------------------------
----
Spirometra erinaceieuropaei (PRJEB1202)
--------------------------
Diphyllobothrium latum (PRJEB1206)
----------------------
-
Taenia asiatica South Korea (PRJEB532)
----------------------
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Taenia asiatica TASYD01 (PRJNA299871)
----------------------
--------
Taenia saginata TSAYD01 (PRJNA71493)
-----------------------
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Taenia solium Mexico (PRJNA170813)
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Hydatigera taeniaeformis Spain/Canary Islands (PRJEB534)
-------------------------------
-
Echinococcus multilocularis Java (PRJEB122)
--------------------------------
----
Echinococcus canadensis (PRJEB8992)
-------------------------
----
-
Echinococcus granulosus G1 (PRJEB121)
-------------------------------
Echinococcus granulosus G1 (PRJNA182977)
----------------------
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Hymenolepis microstoma England/Nottingham (PRJEB124)
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-------
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Hymenolepis nana Japan (PRJEB508)
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Hymenolepis diminuta Denmark (PRJEB507)
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Mesocestoides corti Specht & Voge 1965 (PRJEB510)
----------------------------------------------
-
Gyrodactylus salaris Lier (PRJNA244375)
-------------------------
Protopolystoma xenopodis (PRJEB1201)
----
----------------------
-
Fasciola hepatica (PRJNA179522)
----------------------------
----
Fasciola hepatica (PRJEB6687)
----------------------
----------------
--------
Echinostoma caproni Egypt (PRJEB1207)
--------------------------------
-
Opisthorchis viverrini (PRJNA222628)
----------------------------
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Clonorchis sinensis Henan (PRJDA72781)
---------------------------------
-
Schistosoma rodhaini Republic of Burundi (PRJEB526)
-------------------
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Schistosoma mansoni Puerto Rico (PRJEA36577)
----------------------
----
-
Schistosoma curassoni Senegal/Dakar (PRJEB519)
----------------------------
----
Schistosoma haematobium (PRJNA78265)
----------------------
----
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Schistosoma mattheei Zambia/Denwood (PRJEB523)
-------------------
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Schistosoma margrebowiei Zambia (PRJEB522)
--------------------------------------
Schistosoma japonicum China/Anhui (PRJEA34885)
----
------------------------------------
Trichobilharzia regenti (PRJEB4662)
---------------------------------------------------
-
Macrostomum lignano dv1 (PRJNA284736)
-------------------
Schmidtea mediterranea S2F2 (PRJNA12585)
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-
Drosophila melanogaster
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Ixodes scapularis Wikel
----------------
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Rattus norvegicus
-
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Mus musculus reference (CL57BL6)
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Homo sapiens
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Danio rerio
-------------------------
Ciona intestinalis
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Nematostella vectensis CH2 x CH6
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Trichoplax adhaerens Grell-BS-1999
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Amphimedon queenslandica
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Saccharomyces cerevisiae S288C S288C
----
Schizosaccharomyces pombe 972h- 972h-