WormBase ParaSite HomeVersion: WBPS10 (WS263)

Comparative Genomics

For full details of The protein tree pipeline and the subsequent prediction of homologues, see the Ensembl Compara documentation.

This page provides a summary of the Ensembl phylogenetic analysis of protein families. The following views are available:

Overall Summary

Legend
Internal nodes (ancestral taxa) Node types Speciations Duplications Dubious nodes
Leaves (extant species) Gene tree coverage Genes in multi-species trees Genes in single-species trees Orphaned genes
Gene QC Validated genes Short genes Long genes Split genes
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Trichoplax adhaerens Grell-BS-1999
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Nematostella vectensis CH2 x CH6
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-
Macrostomum lignano dv1 (PRJNA284736)
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Schmidtea mediterranea S2F2 (PRJNA12585)
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-
Schistosoma mansoni Puerto Rico (PRJEA36577)
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Schistosoma rodhaini Republic of Burundi (PRJEB526)
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----
-
Schistosoma haematobium (PRJNA78265)
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Schistosoma curassoni Senegal/Dakar (PRJEB519)
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----
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Schistosoma mattheei Zambia/Denwood (PRJEB523)
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Schistosoma margrebowiei Zambia (PRJEB522)
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Schistosoma japonicum China/Anhui (PRJEA34885)
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Trichobilharzia regenti (PRJEB4662)
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-
Clonorchis sinensis Henan (PRJDA72781)
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Opisthorchis viverrini (PRJNA222628)
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-
Fasciola hepatica (PRJEB6687)
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Fasciola hepatica (PRJNA179522)
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Echinostoma caproni Egypt (PRJEB1207)
----------------------------------------
-
Gyrodactylus salaris Lier (PRJNA244375)
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Protopolystoma xenopodis (PRJEB1201)
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Schistocephalus solidus NST_G2 (PRJEB527)
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Spirometra erinaceieuropaei (PRJEB1202)
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Diphyllobothrium latum (PRJEB1206)
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-
Echinococcus canadensis (PRJEB8992)
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Echinococcus multilocularis Java (PRJEB122)
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-
Echinococcus granulosus G1 (PRJNA182977)
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----
----
Echinococcus granulosus G1 (PRJEB121)
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-
Taenia asiatica TASYD01 (PRJNA299871)
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Taenia asiatica South Korea (PRJEB532)
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----
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Taenia solium Mexico (PRJNA170813)
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Taenia saginata TSAYD01 (PRJNA71493)
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Hydatigera taeniaeformis Spain/Canary Islands (PRJEB534)
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-
Hymenolepis microstoma England/Nottingham (PRJEB124)
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Hymenolepis nana Japan (PRJEB508)
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Hymenolepis diminuta Denmark (PRJEB507)
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Mesocestoides corti Specht & Voge 1965 (PRJEB510)
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-
Trichuris suis DCEP-RM93F (PRJNA208416)
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----
Trichuris suis DCEP-RM93M (PRJNA208415)
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Trichuris suis (PRJNA179528)
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Trichuris trichiura Republic of Ecuador (PRJEB535)
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Trichuris muris Scotland/Edinburgh (PRJEB126)
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-
Trichinella papuae ISS1980 (PRJNA257433)
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----
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Trichinella zimbabwensis ISS1029 (PRJNA257433)
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Trichinella pseudospiralis ISS13 (PRJNA257433)
----------------------
-
Trichinella spiralis ISS 195 (PRJNA12603)
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Trichinella spiralis ISS3 (PRJNA257433)
--------------------------
Trichinella nelsoni ISS37 (PRJNA257433)
----------------------
-
Trichinella nativa ISS10 (PRJNA257433)
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----
----
----
Trichinella nativa (PRJNA179527)
----------------------
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Trichinella sp. T6 ISS34 (PRJNA257433)
----------------------------
-
Trichinella sp. T9 ISS409 (PRJNA257433)
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----
Trichinella murrelli ISS417 (PRJNA257433)
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-
Trichinella sp. T8 ISS272 (PRJNA257433)
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Trichinella britovi ISS120 (PRJNA257433)
----------------------------------
Trichinella patagoniensis ISS2496 (PRJNA257433)
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Soboliphyme baturini Alaska/Dall Island (PRJEB516)
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Romanomermis culicivorax (PRJEB1358)
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-
Loa loa L. loa Cameroon isolate (PRJNA60051)
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Loa loa (PRJNA246086)
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Brugia timori Flores island/ Indonesia (PRJEB4663)
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Brugia malayi FR3 (PRJNA10729)
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Brugia pahangi Scotland/Glasgow (PRJEB497)
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-
Wuchereria bancrofti pt0022 (PRJNA275548)
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Wuchereria bancrofti (PRJEB536)
----------------------
-
Litomosoides sigmodontis Bain lab strain (PRJEB3075)
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Acanthocheilonema viteae (PRJEB4306)
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Elaeophora elaphi (PRJEB502)
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-
Onchocerca ochengi (PRJEB1809)
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Onchocerca ochengi Ngaoundere (PRJEB1204)
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Onchocerca volvulus O. volvulus Cameroon isolate (PRJEB513)
-----------------------------
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Onchocerca flexuosa Spain/Cordoba (PRJEB512)
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Dirofilaria immitis (PRJEB1797)
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Thelazia callipaeda Switzerland/Ticino (PRJEB1205)
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Gongylonema pulchrum Japan/Hokkaido (PRJEB505)
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Dracunculus medinensis (PRJEB500)
----------------
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-
Toxocara canis PN_DK_2014 (PRJNA248777)
-------------------------
Toxocara canis Brazil/Equador (PRJEB533)
----------------------
----
-
Ascaris suum (PRJNA62057)
----------------------------
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Ascaris suum A. suum Australian isolate (PRJNA80881)
----------------
--------------------
----
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Ascaris lumbricoides Republic of Ecuador (PRJEB4950)
-----------------------------
-
Parascaris equorum (PRJEB514)
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Parascaris univalens (PRJNA386823)
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Anisakis simplex (PRJEB496)
-------------------------------------------------------
-
Syphacia muris Spain/Valencia (PRJEB524)
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Enterobius vermicularis Spain/Canary Islands (PRJEB503)
-----------------------
-
Globodera rostochiensis Ro1 (PRJEB13504)
----------------------
Globodera pallida Lindley (PRJEB123)
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----
-
Meloidogyne incognita Morelos (PRJEA28837)
----------------------
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Meloidogyne floridensis (PRJEB6016)
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----------
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Meloidogyne hapla VW9 (PRJNA29083)
------------------------------------
Ditylenchus destructor Dd01 (PRJNA312427)
-------------------------------------
Bursaphelenchus xylophilus (PRJEA64437)
----------------------
----
-
Steinernema carpocapsae (PRJNA202318)
----------------------------
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Steinernema scapterisci (PRJNA204942)
----------------------------
----
-
Steinernema feltiae (PRJNA204661)
----------------
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-------
Steinernema monticolum (PRJNA205067)
-----------------------------------
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Steinernema glaseri (PRJNA204943)
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Panagrellus redivivus (PRJNA186477)
-------------------------
-
Strongyloides venezuelensis (PRJEB530)
-------------------------
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Strongyloides papillosus LIN (PRJEB525)
-------------------------
----
-
Strongyloides ratti (PRJEB125)
--------------------------
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Strongyloides stercoralis PV0001 (PRJEB528)
---------------------------------
Parastrongyloides trichosuri KNP (PRJEB515)
----------------------------------
Rhabditophanes sp. KR3021 kr 3021 (PRJEB1297)
------------------------------
-
Caenorhabditis brenneri (PRJNA20035)
----
----------------------
Caenorhabditis tropicalis (PRJNA53597)
-------------------------
----
-
Caenorhabditis briggsae (PRJNA10731)
-------------------------------
----
Caenorhabditis nigoni JU1422 (PRJNA384657)
-------------------------
----
--------
Caenorhabditis sinica (PRJNA194557)
-------------------------
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Caenorhabditis remanei (PRJNA53967)
-------------------------
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Caenorhabditis elegans N2 (PRJNA13758)
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----
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Caenorhabditis japonica (PRJNA12591)
----------------------------------------------------
Caenorhabditis angaria (PRJNA51225)
-------------------------------------------------
-
Diploscapter pachys PF1309 (PRJNA280107)
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Diploscapter coronatus PDL0010 (PRJDB3143)
----------------------------
-
Ancylostoma ceylanicum HY135 (PRJNA231479)
--------------------------------
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Ancylostoma ceylanicum (PRJNA72583)
-------------------------------
-
Ancylostoma caninum Baltimore (PRJNA72585)
----------------------------
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Ancylostoma duodenale Baltimore (PRJNA72581)
----------------------------------
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Cylicostephanus goldi England/Cheshire (PRJEB498)
-------------------------
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Strongylus vulgaris USA/Kentucky (PRJEB531)
----------------------------------
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Oesophagostomum dentatum OD-Hann (PRJNA72579)
-------------------------------
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Necator americanus N. amaericanus Hunan isolate (PRJNA72135)
-------------------------------------
-
Heligmosomoides polygyrus (PRJEB15396)
-----------------------------------------
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Heligmosomoides polygyrus Scotland/Edinburgh (PRJEB1203)
--------------------------------------------
Nippostrongylus brasiliensis (PRJEB511)
-
----------------------------
----
----
-
Haemonchus contortus H. contortus Australian isolate (PRJNA205202)
----------------------
----------------
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Haemonchus contortus MHco3 (PRJEB506)
----------------------------------
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Haemonchus placei MHpl1 (PRJEB509)
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------------------------------
Teladorsagia circumcincta (PRJNA72569)
--------------------------
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-
Angiostrongylus cantonensis Republic of China (PRJEB493)
-------------------------------------
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Angiostrongylus costaricensis Costa Rica (PRJEB494)
-------------------------
-
Dictyocaulus viviparus (PRJNA72587)
-------------------------
Dictyocaulus viviparus (PRJEB5116)
----------------------------------------------
Heterorhabditis bacteriophora M31e (PRJNA13977)
---------------------------------------------------
-
Pristionchus exspectatus RS5522B (PRJEB6009)
-------------------
Pristionchus pacificus PS312 (PRJNA12644)
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Ixodes scapularis Wikel
----------------
Drosophila melanogaster
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Capitella teleta
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Crassostrea gigas
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-
Rattus norvegicus
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Mus musculus reference (CL57BL6)
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Homo sapiens
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Danio rerio
----------------------
Ciona intestinalis
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Amphimedon queenslandica
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Schizosaccharomyces pombe 972h- 972h-
----
Saccharomyces cerevisiae S288C S288C