WormBase ParaSite HomeVersion: WBPS9 (WS258)

Comparative Genomics

For full details of The protein tree pipeline and the subsequent prediction of homologues, see the Ensembl Compara documentation.

This page provides a summary of the Ensembl phylogenetic analysis of protein families. The following views are available:

Overall Summary

Legend
Internal nodes (ancestral taxa) Node types Speciations Duplications Dubious nodes
Leaves (extant species) Gene tree coverage Genes in multi-species trees Genes in single-species trees Orphaned genes
Gene QC Validated genes Short genes Long genes Split genes
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Saccharomyces cerevisiae S288c
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Schizosaccharomyces pombe 972h-
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Nematostella vectensis
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Trichoplax adhaerens
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-
Mus musculus
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Rattus norvegicus
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Homo sapiens
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Danio rerio
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Ciona intestinalis
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-
Strongyloides ratti (PRJEB125)
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Strongyloides stercoralis (PRJEB528)
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-
Strongyloides venezuelensis (PRJEB530)
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Strongyloides papillosus (PRJEB525)
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Parastrongyloides trichosuri (PRJEB515)
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Rhabditophanes sp. KR3021 (PRJEB1297)
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-
Steinernema carpocapsae (PRJNA202318)
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----
----
Steinernema scapterisci (PRJNA204942)
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-
Steinernema monticolum (PRJNA205067)
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Steinernema feltiae (PRJNA204661)
---------------------------------
Steinernema glaseri (PRJNA204943)
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Panagrellus redivivus (PRJNA186477)
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-
Globodera rostochiensis (PRJEB13504)
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Globodera pallida (PRJEB123)
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-
Meloidogyne incognita (PRJEA28837)
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Meloidogyne floridensis (PRJEB6016)
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Meloidogyne hapla (PRJNA29083)
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Ditylenchus destructor (PRJNA312427)
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Bursaphelenchus xylophilus (PRJEA64437)
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-
Caenorhabditis tropicalis (PRJNA53597)
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Caenorhabditis brenneri (PRJNA20035)
----------------------
-
Caenorhabditis sinica (PRJNA194557)
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----
----
Caenorhabditis briggsae (PRJNA10731)
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----
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Caenorhabditis remanei (PRJNA53967)
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Caenorhabditis elegans (PRJNA13758)
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Caenorhabditis japonica (PRJNA12591)
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------------------------------------
Caenorhabditis angaria (PRJNA51225)
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-
Dictyocaulus viviparus (PRJNA72587)
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Dictyocaulus viviparus (PRJEB5116)
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-
Angiostrongylus costaricensis (PRJEB494)
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Angiostrongylus cantonensis (PRJEB493)
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-
Heligmosomoides polygyrus (PRJEB1203)
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Heligmosomoides polygyrus (PRJEB15396)
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Nippostrongylus brasiliensis (PRJEB511)
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----
-
Haemonchus contortus (PRJNA205202)
-
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----
Haemonchus contortus (PRJEB506)
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Haemonchus placei (PRJEB509)
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Teladorsagia circumcincta (PRJNA72569)
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-
Ancylostoma ceylanicum (PRJNA231479)
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----
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Ancylostoma ceylanicum (PRJNA72583)
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-
Ancylostoma caninum (PRJNA72585)
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Ancylostoma duodenale (PRJNA72581)
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-
Cylicostephanus goldi (PRJEB498)
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Strongylus vulgaris (PRJEB531)
----------------------------
--------
Oesophagostomum dentatum (PRJNA72579)
------------------------------------
Necator americanus (PRJNA72135)
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Heterorhabditis bacteriophora (PRJNA13977)
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-
Pristionchus exspectatus (PRJEB6009)
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Pristionchus pacificus (PRJNA12644)
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-
Enterobius vermicularis (PRJEB503)
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Syphacia muris (PRJEB524)
---------------------------------
-
Loa loa (PRJNA246086)
----------------------------
Loa loa (PRJNA60051)
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-
Brugia malayi (PRJNA10729)
-------------------------------
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Brugia timori (PRJEB4663)
----------------------------
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Brugia pahangi (PRJEB497)
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--------
-
Wuchereria bancrofti (PRJNA275548)
-------------------------------
Wuchereria bancrofti (PRJEB536)
-------------------------------
-
Acanthocheilonema viteae (PRJEB4306)
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-------
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Litomosoides sigmodontis (PRJEB3075)
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--------
Elaeophora elaphi (PRJEB502)
-------------------------
-
Onchocerca ochengi (PRJEB1809)
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----
Onchocerca ochengi (PRJEB1204)
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Onchocerca volvulus (PRJEB513)
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Onchocerca flexuosa (PRJEB512)
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Dirofilaria immitis (PRJEB1797)
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Thelazia callipaeda (PRJEB1205)
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Gongylonema pulchrum (PRJEB505)
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Dracunculus medinensis (PRJEB500)
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-
Toxocara canis (PRJNA248777)
-------------------------
Toxocara canis (PRJEB533)
----------------------
----
-
Ascaris suum (PRJNA62057)
----------------------------
----
Ascaris suum (PRJNA80881)
-----------------------------------
----
--------
Ascaris lumbricoides (PRJEB4950)
------------------------------
Parascaris equorum (PRJEB514)
-----------------------------------
Anisakis simplex (PRJEB496)
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-
Trichuris suis (PRJNA208416)
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----
Trichuris suis (PRJNA208415)
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Trichuris suis (PRJNA179528)
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Trichuris trichiura (PRJEB535)
----
----------------------------
Trichuris muris (PRJEB126)
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-
Trichinella zimbabwensis (PRJNA257433)
----------------
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Trichinella papuae (PRJNA257433)
-----------------------------
Trichinella pseudospiralis (PRJNA257433)
-------------------------
-
Trichinella nativa (PRJNA179527)
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Trichinella nativa (PRJNA257433)
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----
--------
Trichinella sp. T6 (PRJNA257433)
----------------------------
-
Trichinella sp. T8 (PRJNA257433)
----------------
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----
----
Trichinella britovi (PRJNA257433)
-------------------------------
-
Trichinella murrelli (PRJNA257433)
----------------------
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Trichinella sp. T9 (PRJNA257433)
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Trichinella patagoniensis (PRJNA257433)
----------
----------------
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-
Trichinella spiralis (PRJNA257433)
------------------------------
----
Trichinella spiralis (PRJNA12603)
--------------------------
Trichinella nelsoni (PRJNA257433)
-----------------------------------------------
Soboliphyme baturini (PRJEB516)
------------------------------------------------
Romanomermis culicivorax (PRJEB1358)
----------------------------------------
-
Gyrodactylus salaris (PRJNA244375)
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Protopolystoma xenopodis (PRJEB1201)
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-
Schistosoma curassoni (PRJEB519)
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Schistosoma haematobium (PRJNA78265)
----------------
----
--------
Schistosoma mattheei (PRJEB523)
----------------------
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Schistosoma margrebowiei (PRJEB522)
----------------------
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-
Schistosoma rodhaini (PRJEB526)
----------------------
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Schistosoma mansoni (PRJEA36577)
--------------------------------------------
Schistosoma japonicum (PRJEA34885)
-------------------
------------------------
Trichobilharzia regenti (PRJEB4662)
--------------------------
-
Opisthorchis viverrini (PRJNA222628)
-------------------------------
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Clonorchis sinensis (PRJDA72781)
----------------
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-
Fasciola hepatica (PRJEB6687)
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----
Fasciola hepatica (PRJNA179522)
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Echinostoma caproni (PRJEB1207)
-------------------------
-
Schistocephalus solidus (PRJEB527)
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Spirometra erinaceieuropaei (PRJEB1202)
--------------------------------
Diphyllobothrium latum (PRJEB1206)
----------------------------
-
Taenia asiatica (PRJEB532)
----------------------------
----
Taenia asiatica (PRJNA299871)
----------------------------
--------
Taenia solium (PRJNA170813)
----------------------------
--------
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Taenia saginata (PRJNA71493)
----------------------
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Hydatigera taeniaeformis (PRJEB534)
----------------------------
-
Echinococcus multilocularis (PRJEB122)
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Echinococcus canadensis (PRJEB8992)
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----
-
Echinococcus granulosus (PRJNA182977)
-------------------------
Echinococcus granulosus (PRJEB121)
----------------
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-
Hymenolepis microstoma (PRJEB124)
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Hymenolepis nana (PRJEB508)
-----------------------
Hymenolepis diminuta (PRJEB507)
------------------------------------
Mesocestoides corti (PRJEB510)
---------------------------------------------
-
Schmidtea mediterranea (PRJNA12585)
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Macrostomum lignano (PRJNA284736)
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Drosophila melanogaster
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Ixodes scapularis
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Crassostrea gigas
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Capitella teleta
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Amphimedon queenslandica