WormBase ParaSite HomeVersion: WBPS8 (WS256)

Comparative Genomics

For full details of The protein tree pipeline and the subsequent prediction of homologues, see the Ensembl Compara documentation.

This page provides a summary of the Ensembl phylogenetic analysis of protein families. The following views are available:

Overall Summary

Legend
Internal nodes (ancestral taxa) Node types Speciations Duplications Dubious nodes
Leaves (extant species) Gene tree coverage Genes in multi-species trees Genes in single-species trees Orphaned genes
Gene QC Validated genes Short genes Long genes Split genes
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Mus musculus
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Rattus norvegicus
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Homo sapiens
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Danio rerio
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Ciona intestinalis
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-
Drosophila melanogaster
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Ixodes scapularis
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-
Trichinella zimbabwensis (PRJNA257433)
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Trichinella papuae (PRJNA257433)
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Trichinella pseudospiralis (PRJNA257433)
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-
Trichinella spiralis (PRJNA12603)
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Trichinella spiralis (PRJNA257433)
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Trichinella nelsoni (PRJNA257433)
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-
Trichinella sp. T9 (PRJNA257433)
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Trichinella murrelli (PRJNA257433)
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-
Trichinella sp. T8 (PRJNA257433)
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Trichinella britovi (PRJNA257433)
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-
Trichinella nativa (PRJNA179527)
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Trichinella nativa (PRJNA257433)
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Trichinella sp. T6 (PRJNA257433)
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Trichinella patagoniensis (PRJNA257433)
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Trichuris suis (PRJNA208415)
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Trichuris suis (PRJNA208416)
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Trichuris suis (PRJNA179528)
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Trichuris trichiura (PRJEB535)
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Trichuris muris (PRJEB126)
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Soboliphyme baturini (PRJEB516)
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Romanomermis culicivorax (PRJEB1358)
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-
Enterobius vermicularis (PRJEB503)
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Syphacia muris (PRJEB524)
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Onchocerca ochengi (PRJEB1204)
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Onchocerca ochengi (PRJEB1809)
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Onchocerca volvulus (PRJEB513)
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Onchocerca flexuosa (PRJEB512)
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Dirofilaria immitis (PRJEB1797)
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Litomosoides sigmodontis (PRJEB3075)
------------------------------
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Acanthocheilonema viteae (PRJEB4306)
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Elaeophora elaphi (PRJEB502)
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Loa loa (PRJNA246086)
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Loa loa (PRJNA60051)
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Wuchereria bancrofti (PRJEB536)
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Wuchereria bancrofti (PRJNA275548)
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Brugia malayi (PRJNA10729)
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Brugia timori (PRJEB4663)
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Brugia pahangi (PRJEB497)
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Thelazia callipaeda (PRJEB1205)
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Gongylonema pulchrum (PRJEB505)
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Dracunculus medinensis (PRJEB500)
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Toxocara canis (PRJNA248777)
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Toxocara canis (PRJEB533)
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Ascaris suum (PRJNA62057)
----------------------------------
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Ascaris suum (PRJNA80881)
-----------------------------------------
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Ascaris lumbricoides (PRJEB4950)
------------------------------------
Parascaris equorum (PRJEB514)
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Anisakis simplex (PRJEB496)
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-
Strongylus vulgaris (PRJEB531)
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Cylicostephanus goldi (PRJEB498)
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Oesophagostomum dentatum (PRJNA72579)
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Necator americanus (PRJNA72135)
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-
Ancylostoma ceylanicum (PRJNA231479)
--------------------------------
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Ancylostoma ceylanicum (PRJNA72583)
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-
Ancylostoma caninum (PRJNA72585)
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Ancylostoma duodenale (PRJNA72581)
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Haemonchus contortus (PRJEB506)
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Haemonchus contortus (PRJNA205202)
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Haemonchus placei (PRJEB509)
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Teladorsagia circumcincta (PRJNA72569)
-------------------------------
-
Heligmosomoides polygyrus (PRJEB15396)
--------------------------------
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Heligmosomoides polygyrus (PRJEB1203)
--------------------------------
Nippostrongylus brasiliensis (PRJEB511)
----------------------
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Dictyocaulus viviparus (PRJEB5116)
----------------------------------------
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Dictyocaulus viviparus (PRJNA72587)
----------------------------
-
Angiostrongylus costaricensis (PRJEB494)
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Angiostrongylus cantonensis (PRJEB493)
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Heterorhabditis bacteriophora (PRJNA13977)
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-
Caenorhabditis sinica (PRJNA194557)
----------------------------
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Caenorhabditis briggsae (PRJNA10731)
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Caenorhabditis remanei (PRJNA53967)
-------------------------
--------
-
Caenorhabditis brenneri (PRJNA20035)
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-------
Caenorhabditis tropicalis (PRJNA53597)
-----------------------------
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Caenorhabditis elegans (PRJNA13758)
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Caenorhabditis japonica (PRJNA12591)
---------------------------------------------
Caenorhabditis angaria (PRJNA51225)
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Pristionchus pacificus (PRJNA12644)
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Pristionchus exspectatus (PRJEB6009)
--------------------------
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Globodera rostochiensis (PRJEB13504)
----------------------
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Globodera pallida (PRJEB123)
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-
Meloidogyne incognita (PRJEA28837)
----------------
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Meloidogyne floridensis (PRJEB6016)
--------------------------
Meloidogyne hapla (PRJNA29083)
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----------------------------
Bursaphelenchus xylophilus (PRJEA64437)
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Steinernema monticolum (PRJNA205067)
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Steinernema feltiae (PRJNA204661)
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Steinernema carpocapsae (PRJNA202318)
----------------------
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Steinernema scapterisci (PRJNA204942)
----------------------------
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Steinernema glaseri (PRJNA204943)
-------------------------------
Panagrellus redivivus (PRJNA186477)
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Strongyloides papillosus (PRJEB525)
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Strongyloides venezuelensis (PRJEB530)
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Strongyloides stercoralis (PRJEB528)
--------------------
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Strongyloides ratti (PRJEB125)
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Parastrongyloides trichosuri (PRJEB515)
----------------------------
Rhabditophanes sp. KR3021 (PRJEB1297)
------------------------------------------------
-
Schmidtea mediterranea (PRJNA12585)
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Macrostomum lignano (PRJNA284736)
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-
Schistosoma curassoni (PRJEB519)
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Schistosoma haematobium (PRJNA78265)
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Schistosoma mattheei (PRJEB523)
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Schistosoma margrebowiei (PRJEB522)
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-
Schistosoma rodhaini (PRJEB526)
-------------------
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Schistosoma mansoni (PRJEA36577)
-----------------------------------------
Schistosoma japonicum (PRJEA34885)
-------------------------
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------------------------
Trichobilharzia regenti (PRJEB4662)
--------------------------
-
Clonorchis sinensis (PRJDA72781)
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----------------------------
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Opisthorchis viverrini (PRJNA222628)
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Fasciola hepatica (PRJEB6687)
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Fasciola hepatica (PRJNA179522)
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Echinostoma caproni (PRJEB1207)
----------------------------------------------
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Gyrodactylus salaris (PRJNA244375)
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Protopolystoma xenopodis (PRJEB1201)
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Hymenolepis nana (PRJEB508)
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Hymenolepis microstoma (PRJEB124)
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Hymenolepis diminuta (PRJEB507)
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Taenia asiatica (PRJEB532)
-------------------------
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Taenia solium (PRJNA170813)
----------------------
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Hydatigera taeniaeformis (PRJEB534)
-
----------------
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-
Echinococcus granulosus (PRJEB121)
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Echinococcus granulosus (PRJNA182977)
-------------------------
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Echinococcus multilocularis (PRJEB122)
------------------------
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Echinococcus canadensis (PRJEB8992)
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Mesocestoides corti (PRJEB510)
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Schistocephalus solidus (PRJEB527)
----------------------------
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Spirometra erinaceieuropaei (PRJEB1202)
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Diphyllobothrium latum (PRJEB1206)
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Crassostrea gigas
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Capitella teleta
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Nematostella vectensis
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Trichoplax adhaerens
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Amphimedon queenslandica
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Saccharomyces cerevisiae S288c
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Schizosaccharomyces pombe 972h-