WormBase ParaSite HomeVersion: WBPS8 (WS256)

Comparative Genomics

For full details of The protein tree pipeline and the subsequent prediction of homologues, see the Ensembl Compara documentation.

This page provides a summary of the Ensembl phylogenetic analysis of protein families. The following views are available:

Overall Summary

Legend
Internal nodes (ancestral taxa) Node types Speciations Duplications Dubious nodes
Leaves (extant species) Gene tree coverage Genes in multi-species trees Genes in single-species trees Orphaned genes
Gene QC Validated genes Short genes Long genes Split genes
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Saccharomyces cerevisiae S288c
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Schizosaccharomyces pombe 972h-
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Nematostella vectensis
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Trichoplax adhaerens
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-
Ixodes scapularis
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Drosophila melanogaster
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-
Strongyloides papillosus (PRJEB525)
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Strongyloides venezuelensis (PRJEB530)
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-
Strongyloides ratti (PRJEB125)
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Strongyloides stercoralis (PRJEB528)
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Parastrongyloides trichosuri (PRJEB515)
----------------------------
Rhabditophanes sp. KR3021 (PRJEB1297)
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-
Steinernema carpocapsae (PRJNA202318)
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----
----
Steinernema scapterisci (PRJNA204942)
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----
-
Steinernema monticolum (PRJNA205067)
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Steinernema feltiae (PRJNA204661)
---------------------------------
Steinernema glaseri (PRJNA204943)
----------------------------------
Panagrellus redivivus (PRJNA186477)
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----
-
Meloidogyne incognita (PRJEA28837)
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----
Meloidogyne floridensis (PRJEB6016)
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--------
Meloidogyne hapla (PRJNA29083)
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-
Globodera rostochiensis (PRJEB13504)
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Globodera pallida (PRJEB123)
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Bursaphelenchus xylophilus (PRJEA64437)
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-
Pristionchus pacificus (PRJNA12644)
----------------------
Pristionchus exspectatus (PRJEB6009)
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-
Caenorhabditis tropicalis (PRJNA53597)
----------------------
----
Caenorhabditis brenneri (PRJNA20035)
----------------------------
-
Caenorhabditis sinica (PRJNA194557)
----------------------
----
----
Caenorhabditis briggsae (PRJNA10731)
----------------------
-----------
Caenorhabditis remanei (PRJNA53967)
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--------
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Caenorhabditis elegans (PRJNA13758)
-----------------------------------------
Caenorhabditis japonica (PRJNA12591)
------------------------------------------
Caenorhabditis angaria (PRJNA51225)
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-
Dictyocaulus viviparus (PRJEB5116)
----------------------------------
----
Dictyocaulus viviparus (PRJNA72587)
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-
Angiostrongylus cantonensis (PRJEB493)
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Angiostrongylus costaricensis (PRJEB494)
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-
Haemonchus contortus (PRJEB506)
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----
----
Haemonchus contortus (PRJNA205202)
-------------------------
--------
Haemonchus placei (PRJEB509)
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Teladorsagia circumcincta (PRJNA72569)
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-
Heligmosomoides polygyrus (PRJEB1203)
--------------------------------
----
Heligmosomoides polygyrus (PRJEB15396)
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--------
Nippostrongylus brasiliensis (PRJEB511)
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-
Cylicostephanus goldi (PRJEB498)
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Strongylus vulgaris (PRJEB531)
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----
----------
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Oesophagostomum dentatum (PRJNA72579)
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Necator americanus (PRJNA72135)
-
-------------------------
-
Ancylostoma caninum (PRJNA72585)
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----
Ancylostoma duodenale (PRJNA72581)
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-
Ancylostoma ceylanicum (PRJNA231479)
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Ancylostoma ceylanicum (PRJNA72583)
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Heterorhabditis bacteriophora (PRJNA13977)
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-
Ascaris suum (PRJNA62057)
----------------------
----
Ascaris suum (PRJNA80881)
----------------------
--------
Ascaris lumbricoides (PRJEB4950)
----------------------
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Parascaris equorum (PRJEB514)
-------
--------------------------------
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-
Toxocara canis (PRJEB533)
-------------------------------
Toxocara canis (PRJNA248777)
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Anisakis simplex (PRJEB496)
----------------------------
-
Onchocerca ochengi (PRJEB1809)
----------------------------
----
Onchocerca ochengi (PRJEB1204)
----------------------------
--------
Onchocerca volvulus (PRJEB513)
--------------------------------
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Onchocerca flexuosa (PRJEB512)
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Dirofilaria immitis (PRJEB1797)
-------------------------------
-
Brugia malayi (PRJNA10729)
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----
----
----
Brugia timori (PRJEB4663)
-------------------------------------
--------
Brugia pahangi (PRJEB497)
-------------------------------------
--------
-
Wuchereria bancrofti (PRJEB536)
-------------------------------------------
Wuchereria bancrofti (PRJNA275548)
-------------------------------
----
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-
Loa loa (PRJNA60051)
----------------------------------------
Loa loa (PRJNA246086)
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----
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-
Litomosoides sigmodontis (PRJEB3075)
-------------------------------
---------------
----
Acanthocheilonema viteae (PRJEB4306)
--------------------------------------------
Elaeophora elaphi (PRJEB502)
----------------------------
-------------------------------
Thelazia callipaeda (PRJEB1205)
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Gongylonema pulchrum (PRJEB505)
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Dracunculus medinensis (PRJEB500)
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-
Enterobius vermicularis (PRJEB503)
-------------------------
Syphacia muris (PRJEB524)
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-
Trichinella nativa (PRJNA179527)
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----
Trichinella nativa (PRJNA257433)
-------------------------
--------
Trichinella sp. T6 (PRJNA257433)
-------------------------------
-
Trichinella sp. T8 (PRJNA257433)
-------------------------
----
----
Trichinella britovi (PRJNA257433)
-------------------------------
-
Trichinella murrelli (PRJNA257433)
-------------------------
-------
Trichinella sp. T9 (PRJNA257433)
-------------------------------------------
Trichinella patagoniensis (PRJNA257433)
-------------------------------
-
Trichinella spiralis (PRJNA12603)
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-------------
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----
Trichinella spiralis (PRJNA257433)
-------------------
-----------------
Trichinella nelsoni (PRJNA257433)
-------------------------------
-
Trichinella papuae (PRJNA257433)
----------------------------------------
----
Trichinella zimbabwensis (PRJNA257433)
-------------------------
--------
Trichinella pseudospiralis (PRJNA257433)
-------------------------------
-
Trichuris suis (PRJNA208416)
-------------------------------
----
Trichuris suis (PRJNA208415)
-------------------------
-------
--------
Trichuris suis (PRJNA179528)
---------------------------------------
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Trichuris trichiura (PRJEB535)
----
----------------------------
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Trichuris muris (PRJEB126)
--------------------------------------------------
Soboliphyme baturini (PRJEB516)
---------------------------------------------------
Romanomermis culicivorax (PRJEB1358)
---------------------------------------------------
-
Schmidtea mediterranea (PRJNA12585)
----------------------
Macrostomum lignano (PRJNA284736)
----------------------
-
Spirometra erinaceieuropaei (PRJEB1202)
----------------------------------
----
Schistocephalus solidus (PRJEB527)
-----------------------------
Diphyllobothrium latum (PRJEB1206)
-------------------------
-
Taenia solium (PRJNA170813)
-------------------------
----
Taenia asiatica (PRJEB532)
------------------------------
----
--------
Hydatigera taeniaeformis (PRJEB534)
----------------------------
----------------
-
Echinococcus canadensis (PRJEB8992)
----------------------------
----
Echinococcus multilocularis (PRJEB122)
-------------------------
----
-
Echinococcus granulosus (PRJEB121)
-------------------------------
Echinococcus granulosus (PRJNA182977)
-------
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-
Hymenolepis microstoma (PRJEB124)
--------------------------
----
Hymenolepis nana (PRJEB508)
--------------------------
Hymenolepis diminuta (PRJEB507)
-----------------------------------
Mesocestoides corti (PRJEB510)
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-
Schistosoma rodhaini (PRJEB526)
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Schistosoma mansoni (PRJEA36577)
----------------
----
-
Schistosoma haematobium (PRJNA78265)
----------------------
----
Schistosoma curassoni (PRJEB519)
----------------
----
--------
Schistosoma mattheei (PRJEB523)
----------------
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Schistosoma margrebowiei (PRJEB522)
--------------------------------------
Schistosoma japonicum (PRJEA34885)
----------------
------------------------
Trichobilharzia regenti (PRJEB4662)
----------------------
-
Fasciola hepatica (PRJNA179522)
----------------------
----
Fasciola hepatica (PRJEB6687)
-------------
----------------
--------
Echinostoma caproni (PRJEB1207)
--------------------
-
Clonorchis sinensis (PRJDA72781)
----------------
Opisthorchis viverrini (PRJNA222628)
-------------------------------------
-
Protopolystoma xenopodis (PRJEB1201)
-------------
Gyrodactylus salaris (PRJNA244375)
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Capitella teleta
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Crassostrea gigas
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-
Rattus norvegicus
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Mus musculus
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Homo sapiens
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Danio rerio
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Ciona intestinalis
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Amphimedon queenslandica