WormBase ParaSite HomeVersion: WBPS9 (WS258)

Comparative Genomics

For full details of The protein tree pipeline and the subsequent prediction of homologues, see the Ensembl Compara documentation.

This page provides a summary of the Ensembl phylogenetic analysis of protein families. The following views are available:

Overall Summary

Legend
Internal nodes (ancestral taxa) Node types Speciations Duplications Dubious nodes
Leaves (extant species) Gene tree coverage Genes in multi-species trees Genes in single-species trees Orphaned genes
Gene QC Validated genes Short genes Long genes Split genes
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Schizosaccharomyces pombe 972h-
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Saccharomyces cerevisiae S288c
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Trichoplax adhaerens
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Nematostella vectensis
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-
Mus musculus
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Rattus norvegicus
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Homo sapiens
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Danio rerio
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Ciona intestinalis
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-
Ixodes scapularis
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Drosophila melanogaster
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-
Schistocephalus solidus (PRJEB527)
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Spirometra erinaceieuropaei (PRJEB1202)
-----------------------
Diphyllobothrium latum (PRJEB1206)
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-
Taenia asiatica (PRJEB532)
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----
Taenia asiatica (PRJNA299871)
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Taenia solium (PRJNA170813)
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Taenia saginata (PRJNA71493)
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Hydatigera taeniaeformis (PRJEB534)
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-
Echinococcus multilocularis (PRJEB122)
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Echinococcus canadensis (PRJEB8992)
----------------------
----
-
Echinococcus granulosus (PRJNA182977)
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Echinococcus granulosus (PRJEB121)
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-
Hymenolepis microstoma (PRJEB124)
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Hymenolepis nana (PRJEB508)
--------------------------------
Hymenolepis diminuta (PRJEB507)
---------------------------------------------
Mesocestoides corti (PRJEB510)
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-
Protopolystoma xenopodis (PRJEB1201)
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Gyrodactylus salaris (PRJNA244375)
------------------------------------
-
Schistosoma rodhaini (PRJEB526)
-------------------------------
Schistosoma mansoni (PRJEA36577)
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----
----
-
Schistosoma curassoni (PRJEB519)
-------------------------------
----
Schistosoma haematobium (PRJNA78265)
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----------------
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----
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Schistosoma mattheei (PRJEB523)
-------------------------------
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Schistosoma margrebowiei (PRJEB522)
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Schistosoma japonicum (PRJEA34885)
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------------------------
Trichobilharzia regenti (PRJEB4662)
-----------------------------------
-
Opisthorchis viverrini (PRJNA222628)
----------------------------------------
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Clonorchis sinensis (PRJDA72781)
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-
Fasciola hepatica (PRJNA179522)
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Fasciola hepatica (PRJEB6687)
-
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Echinostoma caproni (PRJEB1207)
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-
Schmidtea mediterranea (PRJNA12585)
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Macrostomum lignano (PRJNA284736)
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-
Trichinella spiralis (PRJNA257433)
---------------------------------
----
Trichinella spiralis (PRJNA12603)
--------------------------------
Trichinella nelsoni (PRJNA257433)
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-
Trichinella sp. T8 (PRJNA257433)
----------------------
----
----
Trichinella britovi (PRJNA257433)
-------------------------------
-
Trichinella sp. T9 (PRJNA257433)
----------------------------
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Trichinella murrelli (PRJNA257433)
----------------------------------
-
Trichinella nativa (PRJNA257433)
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----
----
----
Trichinella nativa (PRJNA179527)
-----------------------------------
Trichinella sp. T6 (PRJNA257433)
----------------------------------------
Trichinella patagoniensis (PRJNA257433)
----------------------------
-
Trichinella zimbabwensis (PRJNA257433)
----------------------
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Trichinella papuae (PRJNA257433)
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Trichinella pseudospiralis (PRJNA257433)
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-
Trichuris suis (PRJNA208415)
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----
Trichuris suis (PRJNA208416)
----------------------------
--------
Trichuris suis (PRJNA179528)
-------------------------------
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Trichuris trichiura (PRJEB535)
----------------------------------------
Trichuris muris (PRJEB126)
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Soboliphyme baturini (PRJEB516)
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Romanomermis culicivorax (PRJEB1358)
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-
Ascaris suum (PRJNA80881)
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Ascaris suum (PRJNA62057)
----------------------
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Ascaris lumbricoides (PRJEB4950)
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Parascaris equorum (PRJEB514)
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-
Toxocara canis (PRJNA248777)
----------------------------
Toxocara canis (PRJEB533)
-----------------------------------------
Anisakis simplex (PRJEB496)
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-
Onchocerca ochengi (PRJEB1809)
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----
Onchocerca ochengi (PRJEB1204)
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Onchocerca volvulus (PRJEB513)
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Onchocerca flexuosa (PRJEB512)
----------------------------------------
Dirofilaria immitis (PRJEB1797)
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----
-
Litomosoides sigmodontis (PRJEB3075)
----------------------
------------------
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Acanthocheilonema viteae (PRJEB4306)
-----------------------------------------
Elaeophora elaphi (PRJEB502)
-------------------------------
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-
Loa loa (PRJNA60051)
-------------------------------------
Loa loa (PRJNA246086)
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----
----
-
Brugia malayi (PRJNA10729)
----
----------------------------
----
Brugia timori (PRJEB4663)
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Brugia pahangi (PRJEB497)
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-
Wuchereria bancrofti (PRJNA275548)
----------------------------------
Wuchereria bancrofti (PRJEB536)
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Thelazia callipaeda (PRJEB1205)
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Gongylonema pulchrum (PRJEB505)
---------------------------------------------------
Dracunculus medinensis (PRJEB500)
----------------------------------------------------
-
Enterobius vermicularis (PRJEB503)
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Syphacia muris (PRJEB524)
----------------
-
Caenorhabditis sinica (PRJNA194557)
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Caenorhabditis briggsae (PRJNA10731)
----------------
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Caenorhabditis remanei (PRJNA53967)
----------------
--------
-
Caenorhabditis tropicalis (PRJNA53597)
----------------
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Caenorhabditis brenneri (PRJNA20035)
--------------------
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Caenorhabditis elegans (PRJNA13758)
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Caenorhabditis japonica (PRJNA12591)
---------------------------------------
Caenorhabditis angaria (PRJNA51225)
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-
Angiostrongylus costaricensis (PRJEB494)
-------------------------------
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Angiostrongylus cantonensis (PRJEB493)
----------------------
-
Dictyocaulus viviparus (PRJNA72587)
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----------
Dictyocaulus viviparus (PRJEB5116)
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-
Cylicostephanus goldi (PRJEB498)
----------------------
----
Strongylus vulgaris (PRJEB531)
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----
--------
Oesophagostomum dentatum (PRJNA72579)
-------------------------
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Necator americanus (PRJNA72135)
-------------------------------
-
Ancylostoma ceylanicum (PRJNA72583)
--------------------------------
----
Ancylostoma ceylanicum (PRJNA231479)
----------------------------
-
Ancylostoma caninum (PRJNA72585)
----------------------
----
Ancylostoma duodenale (PRJNA72581)
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----
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-
Haemonchus contortus (PRJEB506)
-------------------------
----
Haemonchus contortus (PRJNA205202)
-------------------------
--------
Haemonchus placei (PRJEB509)
----------------------
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Teladorsagia circumcincta (PRJNA72569)
-------------------------
-
Heligmosomoides polygyrus (PRJEB1203)
--------------------------
----
Heligmosomoides polygyrus (PRJEB15396)
--------------------------
Nippostrongylus brasiliensis (PRJEB511)
-------------------------------------------
Heterorhabditis bacteriophora (PRJNA13977)
--------------------------------------------
-
Pristionchus pacificus (PRJNA12644)
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Pristionchus exspectatus (PRJEB6009)
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--------
-
Globodera rostochiensis (PRJEB13504)
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Globodera pallida (PRJEB123)
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Meloidogyne incognita (PRJEA28837)
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Meloidogyne floridensis (PRJEB6016)
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Meloidogyne hapla (PRJNA29083)
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Ditylenchus destructor (PRJNA312427)
----------------------------
Bursaphelenchus xylophilus (PRJEA64437)
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----
-
Steinernema scapterisci (PRJNA204942)
-------------------
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Steinernema carpocapsae (PRJNA202318)
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----
-
Steinernema feltiae (PRJNA204661)
----------------
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Steinernema monticolum (PRJNA205067)
----------------------
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Steinernema glaseri (PRJNA204943)
-------------------------
Panagrellus redivivus (PRJNA186477)
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-
Strongyloides venezuelensis (PRJEB530)
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Strongyloides papillosus (PRJEB525)
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-
Strongyloides stercoralis (PRJEB528)
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Strongyloides ratti (PRJEB125)
---------------------
Parastrongyloides trichosuri (PRJEB515)
----------------------
Rhabditophanes sp. KR3021 (PRJEB1297)
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Crassostrea gigas
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Capitella teleta
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Amphimedon queenslandica