WormBase ParaSite HomeVersion: WBPS9 (WS258)

Comparative Genomics

For full details of The protein tree pipeline and the subsequent prediction of homologues, see the Ensembl Compara documentation.

This page provides a summary of the Ensembl phylogenetic analysis of protein families. The following views are available:

Overall Summary

Legend
Internal nodes (ancestral taxa) Node types Speciations Duplications Dubious nodes
Leaves (extant species) Gene tree coverage Genes in multi-species trees Genes in single-species trees Orphaned genes
Gene QC Validated genes Short genes Long genes Split genes
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Schizosaccharomyces pombe 972h-
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Saccharomyces cerevisiae S288c
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Nematostella vectensis
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Trichoplax adhaerens
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-
Capitella teleta
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Crassostrea gigas
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-
Drosophila melanogaster
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Ixodes scapularis
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-
Angiostrongylus cantonensis (PRJEB493)
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Angiostrongylus costaricensis (PRJEB494)
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-
Dictyocaulus viviparus (PRJEB5116)
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Dictyocaulus viviparus (PRJNA72587)
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-
Heligmosomoides polygyrus (PRJEB15396)
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--------
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Heligmosomoides polygyrus (PRJEB1203)
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Nippostrongylus brasiliensis (PRJEB511)
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----
-
Haemonchus contortus (PRJEB506)
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Haemonchus contortus (PRJNA205202)
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Haemonchus placei (PRJEB509)
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Teladorsagia circumcincta (PRJNA72569)
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-
Cylicostephanus goldi (PRJEB498)
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Strongylus vulgaris (PRJEB531)
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Oesophagostomum dentatum (PRJNA72579)
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Necator americanus (PRJNA72135)
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-
Ancylostoma duodenale (PRJNA72581)
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Ancylostoma caninum (PRJNA72585)
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-
Ancylostoma ceylanicum (PRJNA72583)
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Ancylostoma ceylanicum (PRJNA231479)
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Heterorhabditis bacteriophora (PRJNA13977)
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-
Caenorhabditis briggsae (PRJNA10731)
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Caenorhabditis sinica (PRJNA194557)
-------------------------
--------
Caenorhabditis remanei (PRJNA53967)
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-
Caenorhabditis brenneri (PRJNA20035)
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Caenorhabditis tropicalis (PRJNA53597)
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Caenorhabditis elegans (PRJNA13758)
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Caenorhabditis japonica (PRJNA12591)
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Caenorhabditis angaria (PRJNA51225)
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-
Pristionchus exspectatus (PRJEB6009)
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Pristionchus pacificus (PRJNA12644)
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-
Strongyloides ratti (PRJEB125)
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Strongyloides stercoralis (PRJEB528)
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-
Strongyloides venezuelensis (PRJEB530)
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Strongyloides papillosus (PRJEB525)
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Parastrongyloides trichosuri (PRJEB515)
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Rhabditophanes sp. KR3021 (PRJEB1297)
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-
Steinernema scapterisci (PRJNA204942)
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Steinernema carpocapsae (PRJNA202318)
-
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-
Steinernema feltiae (PRJNA204661)
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Steinernema monticolum (PRJNA205067)
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Steinernema glaseri (PRJNA204943)
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Panagrellus redivivus (PRJNA186477)
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-
Meloidogyne incognita (PRJEA28837)
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Meloidogyne floridensis (PRJEB6016)
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Meloidogyne hapla (PRJNA29083)
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-
Globodera pallida (PRJEB123)
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Globodera rostochiensis (PRJEB13504)
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Ditylenchus destructor (PRJNA312427)
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Bursaphelenchus xylophilus (PRJEA64437)
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-
Enterobius vermicularis (PRJEB503)
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Syphacia muris (PRJEB524)
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-
Onchocerca ochengi (PRJEB1809)
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Onchocerca ochengi (PRJEB1204)
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Onchocerca volvulus (PRJEB513)
--------------------------------
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Onchocerca flexuosa (PRJEB512)
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Dirofilaria immitis (PRJEB1797)
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----
-
Acanthocheilonema viteae (PRJEB4306)
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----
Litomosoides sigmodontis (PRJEB3075)
-------------------------------
--------
Elaeophora elaphi (PRJEB502)
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-
Loa loa (PRJNA60051)
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Loa loa (PRJNA246086)
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-
Wuchereria bancrofti (PRJNA275548)
-------------------------------
----
Wuchereria bancrofti (PRJEB536)
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-
Brugia timori (PRJEB4663)
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Brugia malayi (PRJNA10729)
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Brugia pahangi (PRJEB497)
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Thelazia callipaeda (PRJEB1205)
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Gongylonema pulchrum (PRJEB505)
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Dracunculus medinensis (PRJEB500)
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-
Toxocara canis (PRJEB533)
-------------------------------
Toxocara canis (PRJNA248777)
----------------------------
----
-
Ascaris suum (PRJNA80881)
----------------------------------
----
Ascaris suum (PRJNA62057)
-----------------------------------------
----
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Ascaris lumbricoides (PRJEB4950)
------------------------------------
Parascaris equorum (PRJEB514)
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Anisakis simplex (PRJEB496)
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-
Trichuris suis (PRJNA208415)
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Trichuris suis (PRJNA208416)
----------------------
--------
Trichuris suis (PRJNA179528)
------------------------------
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Trichuris trichiura (PRJEB535)
-------------------------------------
Trichuris muris (PRJEB126)
-------------------------
-
Trichinella zimbabwensis (PRJNA257433)
----------------------
----------------
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Trichinella papuae (PRJNA257433)
-----------------------------------
Trichinella pseudospiralis (PRJNA257433)
-------------------------------
-
Trichinella nativa (PRJNA179527)
----
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----
Trichinella nativa (PRJNA257433)
----------------------
----
--------
Trichinella sp. T6 (PRJNA257433)
-------------------------------
-
Trichinella sp. T8 (PRJNA257433)
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----
----
Trichinella britovi (PRJNA257433)
----------------------------------
-
Trichinella murrelli (PRJNA257433)
-------------------------
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Trichinella sp. T9 (PRJNA257433)
----------------------------------------
Trichinella patagoniensis (PRJNA257433)
----------------------------
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-
Trichinella spiralis (PRJNA12603)
------------------------------
----
Trichinella spiralis (PRJNA257433)
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Trichinella nelsoni (PRJNA257433)
--------------------------------------------
Soboliphyme baturini (PRJEB516)
---------------------------------------------
Romanomermis culicivorax (PRJEB1358)
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-
Echinococcus granulosus (PRJNA182977)
-----------------
----
Echinococcus granulosus (PRJEB121)
----------------
-
Echinococcus multilocularis (PRJEB122)
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----
Echinococcus canadensis (PRJEB8992)
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-
Taenia asiatica (PRJEB532)
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----
Taenia asiatica (PRJNA299871)
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----
--------
Taenia solium (PRJNA170813)
--------------------------
Taenia saginata (PRJNA71493)
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Hydatigera taeniaeformis (PRJEB534)
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-
Hymenolepis microstoma (PRJEB124)
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Hymenolepis nana (PRJEB508)
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Hymenolepis diminuta (PRJEB507)
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Mesocestoides corti (PRJEB510)
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-
Spirometra erinaceieuropaei (PRJEB1202)
--------------------------------
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Schistocephalus solidus (PRJEB527)
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Diphyllobothrium latum (PRJEB1206)
----------------
-
Schistosoma haematobium (PRJNA78265)
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Schistosoma curassoni (PRJEB519)
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----
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Schistosoma mattheei (PRJEB523)
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Schistosoma margrebowiei (PRJEB522)
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-
Schistosoma rodhaini (PRJEB526)
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Schistosoma mansoni (PRJEA36577)
-----------------------------------------
Schistosoma japonicum (PRJEA34885)
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Trichobilharzia regenti (PRJEB4662)
----------------------
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-
Fasciola hepatica (PRJNA179522)
----------------------
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Fasciola hepatica (PRJEB6687)
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Echinostoma caproni (PRJEB1207)
--------------------
-
Opisthorchis viverrini (PRJNA222628)
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Clonorchis sinensis (PRJDA72781)
-------------------------------------
-
Gyrodactylus salaris (PRJNA244375)
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Protopolystoma xenopodis (PRJEB1201)
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-
Macrostomum lignano (PRJNA284736)
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Schmidtea mediterranea (PRJNA12585)
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-
Mus musculus
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Rattus norvegicus
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Homo sapiens
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Danio rerio
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Ciona intestinalis
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Amphimedon queenslandica