WormBase ParaSite HomeVersion: WBPS9 (WS258)

Comparative Genomics

For full details of The protein tree pipeline and the subsequent prediction of homologues, see the Ensembl Compara documentation.

This page provides a summary of the Ensembl phylogenetic analysis of protein families. The following views are available:

Overall Summary

Legend
Internal nodes (ancestral taxa) Node types Speciations Duplications Dubious nodes
Leaves (extant species) Gene tree coverage Genes in multi-species trees Genes in single-species trees Orphaned genes
Gene QC Validated genes Short genes Long genes Split genes
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-
Saccharomyces cerevisiae S288c
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Schizosaccharomyces pombe 972h-
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-
Crassostrea gigas
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Capitella teleta
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-
Onchocerca ochengi (PRJEB1204)
----------
----
Onchocerca ochengi (PRJEB1809)
----------
--------
Onchocerca volvulus (PRJEB513)
--------------
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Onchocerca flexuosa (PRJEB512)
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Dirofilaria immitis (PRJEB1797)
---------------------
-
Loa loa (PRJNA246086)
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-------
Loa loa (PRJNA60051)
----------------
----
-
Brugia malayi (PRJNA10729)
----------------------
----
Brugia timori (PRJEB4663)
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--------
Brugia pahangi (PRJEB497)
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----
--------
-
Wuchereria bancrofti (PRJNA275548)
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Wuchereria bancrofti (PRJEB536)
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-
Acanthocheilonema viteae (PRJEB4306)
----------
---------------
----
Litomosoides sigmodontis (PRJEB3075)
-----------------------
Elaeophora elaphi (PRJEB502)
----------
-------------------------------
Thelazia callipaeda (PRJEB1205)
--------------------------------------------
Gongylonema pulchrum (PRJEB505)
---------------------------------------------
Dracunculus medinensis (PRJEB500)
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-
Toxocara canis (PRJEB533)
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Toxocara canis (PRJNA248777)
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-
Ascaris suum (PRJNA80881)
----------
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Ascaris suum (PRJNA62057)
--------------------------------
----
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Ascaris lumbricoides (PRJEB4950)
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Parascaris equorum (PRJEB514)
--------------------------------
Anisakis simplex (PRJEB496)
-------------------------------------------------
-
Enterobius vermicularis (PRJEB503)
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Syphacia muris (PRJEB524)
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-
Dictyocaulus viviparus (PRJEB5116)
-------------------------
----
Dictyocaulus viviparus (PRJNA72587)
----------------
-
Angiostrongylus costaricensis (PRJEB494)
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Angiostrongylus cantonensis (PRJEB493)
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-
Heligmosomoides polygyrus (PRJEB15396)
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--------
----
Heligmosomoides polygyrus (PRJEB1203)
--------------------------
Nippostrongylus brasiliensis (PRJEB511)
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----
-
Haemonchus contortus (PRJEB506)
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----
Haemonchus contortus (PRJNA205202)
----------------------
--------
Haemonchus placei (PRJEB509)
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Teladorsagia circumcincta (PRJNA72569)
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-
Strongylus vulgaris (PRJEB531)
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-------
----
Cylicostephanus goldi (PRJEB498)
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--------
Oesophagostomum dentatum (PRJNA72579)
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Necator americanus (PRJNA72135)
-------------------------
-
Ancylostoma ceylanicum (PRJNA72583)
--------------------------
----
Ancylostoma ceylanicum (PRJNA231479)
----------------------
-
Ancylostoma duodenale (PRJNA72581)
----------------
-------
Ancylostoma caninum (PRJNA72585)
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Heterorhabditis bacteriophora (PRJNA13977)
----------------------
-
Caenorhabditis sinica (PRJNA194557)
----------------------
----
Caenorhabditis briggsae (PRJNA10731)
----------------------
--------
Caenorhabditis remanei (PRJNA53967)
----------------
-------
--------
-
Caenorhabditis tropicalis (PRJNA53597)
-------------------------
-------
Caenorhabditis brenneri (PRJNA20035)
--------------------------
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Caenorhabditis elegans (PRJNA13758)
-----------------------------------------
Caenorhabditis japonica (PRJNA12591)
-------
------------------------------------
Caenorhabditis angaria (PRJNA51225)
--------------------------------------------------
-
Pristionchus pacificus (PRJNA12644)
----------------------
Pristionchus exspectatus (PRJEB6009)
----------------------
-
Steinernema scapterisci (PRJNA204942)
----------------------
----
Steinernema carpocapsae (PRJNA202318)
--------------------
----
----
-
Steinernema feltiae (PRJNA204661)
-------------------
-------
Steinernema monticolum (PRJNA205067)
-
------------------------------
Steinernema glaseri (PRJNA204943)
----------------------------------
Panagrellus redivivus (PRJNA186477)
-------------------
--------
-
Globodera pallida (PRJEB123)
----------------------------
Globodera rostochiensis (PRJEB13504)
-------------------------
----
-
Meloidogyne incognita (PRJEA28837)
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----------------
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Meloidogyne floridensis (PRJEB6016)
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Meloidogyne hapla (PRJNA29083)
-------------------------------
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Ditylenchus destructor (PRJNA312427)
----------------------------------
Bursaphelenchus xylophilus (PRJEA64437)
----------------------
-
Strongyloides venezuelensis (PRJEB530)
----------------------
----
Strongyloides papillosus (PRJEB525)
----------------------
----
-
Strongyloides ratti (PRJEB125)
-----------------------
-------
Strongyloides stercoralis (PRJEB528)
------------------------------
Parastrongyloides trichosuri (PRJEB515)
-------------------------------
Rhabditophanes sp. KR3021 (PRJEB1297)
-------------------
-
Trichuris suis (PRJNA208415)
-------------------
----
Trichuris suis (PRJNA208416)
-------------------
--------
Trichuris suis (PRJNA179528)
---------------------------
------------
Trichuris trichiura (PRJEB535)
----------------------------------
Trichuris muris (PRJEB126)
----------------------
-
Trichinella papuae (PRJNA257433)
-------------------
----------------
----
Trichinella zimbabwensis (PRJNA257433)
--------------------------------
Trichinella pseudospiralis (PRJNA257433)
----------------------------
-
Trichinella spiralis (PRJNA12603)
----------------------
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----
Trichinella spiralis (PRJNA257433)
--------------------------------
Trichinella nelsoni (PRJNA257433)
----------------------------
-
Trichinella nativa (PRJNA179527)
-------------------
----
----
----
Trichinella nativa (PRJNA257433)
----------------------------
--------
Trichinella sp. T6 (PRJNA257433)
----------------------------------
-
Trichinella sp. T9 (PRJNA257433)
-------------------------
----
----
Trichinella murrelli (PRJNA257433)
-------------
----------------
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-
Trichinella britovi (PRJNA257433)
----------------------------
Trichinella sp. T8 (PRJNA257433)
-------
-------------------------------
Trichinella patagoniensis (PRJNA257433)
-----------------------------------------------------
Soboliphyme baturini (PRJEB516)
------------------------------------------------------
Romanomermis culicivorax (PRJEB1358)
----------------------------------------------
-
Protopolystoma xenopodis (PRJEB1201)
-------------------------
Gyrodactylus salaris (PRJNA244375)
---------------------------------
-
Schistosoma mansoni (PRJEA36577)
----------------------------
Schistosoma rodhaini (PRJEB526)
----------------------
----
----
-
Schistosoma haematobium (PRJNA78265)
----------------------------------
----
Schistosoma curassoni (PRJEB519)
----------------------------
----
--------
Schistosoma mattheei (PRJEB523)
----------------------------
---------------
Schistosoma margrebowiei (PRJEB522)
--------------------------------------------------
Schistosoma japonicum (PRJEA34885)
-------------------------
------------------------
Trichobilharzia regenti (PRJEB4662)
--------------------------------
-
Clonorchis sinensis (PRJDA72781)
-------------------------------------
----
Opisthorchis viverrini (PRJNA222628)
----------------------
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-
Fasciola hepatica (PRJNA179522)
----------------------------
----
Fasciola hepatica (PRJEB6687)
-------------
-----------------
Echinostoma caproni (PRJEB1207)
-------------------------
-
Spirometra erinaceieuropaei (PRJEB1202)
-----------------------------------------
----
Schistocephalus solidus (PRJEB527)
--------------------------------
Diphyllobothrium latum (PRJEB1206)
-------
----------------------
-
Echinococcus granulosus (PRJNA182977)
-----------------------------------
----
Echinococcus granulosus (PRJEB121)
----------------------------------
-
Echinococcus canadensis (PRJEB8992)
-------------------------------
--------
----
----
Echinococcus multilocularis (PRJEB122)
-------------------------------
-
Taenia asiatica (PRJEB532)
-------------------------------
----
Taenia asiatica (PRJNA299871)
-------------------------
----
--------
Taenia saginata (PRJNA71493)
--------------------------------------
Taenia solium (PRJNA170813)
---------------------------------------
Hydatigera taeniaeformis (PRJEB534)
----------------------
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-
Hymenolepis nana (PRJEB508)
---------------------------------
----
Hymenolepis microstoma (PRJEB124)
-----------------------------
Hymenolepis diminuta (PRJEB507)
----
------------------------------------
Mesocestoides corti (PRJEB510)
------------------------------------------------
-
Schmidtea mediterranea (PRJNA12585)
----------------
Macrostomum lignano (PRJNA284736)
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Drosophila melanogaster
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Ixodes scapularis
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-
Mus musculus
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Rattus norvegicus
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Homo sapiens
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Danio rerio
----------------------
Ciona intestinalis
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Trichoplax adhaerens
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Nematostella vectensis
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Amphimedon queenslandica