WormBase ParaSite HomeVersion: WBPS18 (WS285)-  Archive: WBPS17

Comparative Genomics

For full details of The protein tree pipeline and the subsequent prediction of homologues, see the Ensembl Compara documentation.

This page provides a summary of the Ensembl phylogenetic analysis of protein families. The following views are available:

Overall Summary

Legend
Internal nodes (ancestral taxa) Node types Speciations Duplications Dubious nodes
Leaves (extant species) Gene tree coverage Genes in multi-species trees Genes in single-species trees Orphaned genes
Gene QC Validated genes Short genes Long genes Split genes
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Mus musculus reference (CL57BL6) strain
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Rattus norvegicus strain BN/NHsdMcwi
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Homo sapiens
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Danio rerio
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Ciona intestinalis
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-
Strongyloides papillosus strain LIN (PRJEB525)
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Strongyloides venezuelensis (PRJEB530)
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-
Strongyloides stercoralis strain PV0001 (PRJEB528)
-------------------------------
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Strongyloides ratti (PRJEB125)
---------------------
Parastrongyloides trichosuri strain KNP (PRJEB515)
----------------------
Rhabditophanes sp. KR3021 strain kr 3021 (PRJEB1297)
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-
Panagrolaimus sp. PS1159 (PRJEB32708)
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Panagrolaimus davidi (PRJEB32708)
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-
Panagrolaimus sp. ES5 (PRJEB32708)
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Panagrolaimus superbus (PRJEB32708)
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Panagrolaimus sp. JU765 (PRJEB32708)
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Halicephalobus sp. NKZ332 (PRJNA555616)
-----------------------------
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-
Halicephalobus mephisto (PRJNA528747)
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Panagrellus redivivus (PRJNA186477)
--------------------------------
Acrobeloides nanus (PRJEB26554)
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-
Meloidogyne incognita (PRJEB8714)
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Meloidogyne floridensis strain SJF1 (PRJNA340324)
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-
Meloidogyne javanica strain VW4 (PRJNA340324)
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Meloidogyne arenaria strain A2-O Okinawa_01 (PRJNA438575)
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Meloidogyne enterolobii strain L30 (PRJNA340324)
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----
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Meloidogyne hapla strain VW9 (PRJNA29083)
-----------------------------------
Meloidogyne graminicola (PRJNA411966)
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------------------------
Meloidogyne chitwoodi strain Race1 (PRJNA666745)
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-
Globodera pallida strain D383 (PRJNA764088)
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Globodera pallida strain Lindley (PRJEB123)
----------------
----------------
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Globodera rostochiensis strain Ro1 (PRJEB13504)
--------------------------
-
Heterodera schachtii strain Bonn (PRJNA722882)
----------------------
Heterodera glycines strain TN10 (PRJNA381081)
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----------------------------
-
Ditylenchus dipsaci strain pooled J2 (PRJNA498219)
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Ditylenchus destructor strain Dd01 (PRJNA312427)
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Bursaphelenchus xylophilus ASM23113v1_submitted (PRJEA64437)
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Bursaphelenchus xylophilus strain Ka4C1 (PRJEB40022)
---------------------------------
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Bursaphelenchus okinawaensis strain SH1 (PRJEB40023)
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-
Aphelenchoides fujianensis strain Dali (PRJNA834627)
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Aphelenchoides besseyi strain APVT (PRJNA834627)
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Aphelenchoides bicaudatus strain Fsh (PRJNA834627)
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-
Steinernema monticolum (PRJNA205067)
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Steinernema feltiae strain NW (PRJNA353610)
------------------------------------------
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-
Steinernema carpocapsae (PRJNA202318)
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Steinernema scapterisci (PRJNA204942)
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Steinernema glaseri (PRJNA204943)
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-
Haemonchus contortus (PRJEB506)
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Haemonchus placei strain MHpl1 (PRJEB509)
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Teladorsagia circumcincta (PRJNA72569)
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-
Heligmosomoides polygyrus (PRJEB15396)
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Nippostrongylus brasiliensis (PRJEB511)
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----
-
Cylicostephanus goldi strain England/Cheshire (PRJEB498)
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Strongylus vulgaris strain USA/Kentucky (PRJEB531)
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Oesophagostomum dentatum strain OD-Hann (PRJNA72579)
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Necator americanus strain N. amaericanus Hunan isolate (PRJNA72135)
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Ancylostoma duodenale strain Baltimore (PRJNA72581)
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Ancylostoma caninum strain Baltimore (PRJNA72585)
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Ancylostoma ceylanicum strain HY135 (PRJNA231479)
---------------------------------------------
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Angiostrongylus costaricensis strain Costa Rica (PRJEB494)
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Angiostrongylus vasorum strain ZH-2019-22 (PRJNA663250)
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Angiostrongylus cantonensis strain Guangzhou (PRJNA350391)
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Dictyocaulus viviparus (PRJNA72587)
----------------------------------------
Heterorhabditis bacteriophora strain M31e (PRJNA13977)
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-
Oscheius tipulae strain CEW1 (PRJNA644888)
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Oscheius tipulae Oscheius_tipulae_assembly_v2 (PRJEB15512)
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-
Diploscapter pachys strain PF1309 (PRJNA280107)
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Diploscapter coronatus strain PDL0010 (PRJDB3143)
----------------------
-
Caenorhabditis waitukubuli strain NIC564 (PRJEB12602)
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Caenorhabditis panamensis (PRJEB28259)
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Caenorhabditis becei strain QG2083 (PRJEB28243)
------------------------------------
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Caenorhabditis sulstoni strain JU2788 (PRJEB12601)
-------------------------------------------
Caenorhabditis japonica (PRJNA12591)
----------------------------
--------------------
-
Caenorhabditis inopinata (PRJDB5687)
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Caenorhabditis elegans strain N2 (PRJNA13758)
-----------------------------------------
-
Caenorhabditis briggsae (PRJNA10731)
-------------------------------
----
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Caenorhabditis nigoni strain JU1422 (PRJNA384657)
----------------------
----------------
-
Caenorhabditis zanzibari strain JU2190 (PRJEB12596)
-------------------------------
----
----
Caenorhabditis tribulationis strain JU2818 (PRJEB12608)
-------------------------
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Caenorhabditis sinica (PRJNA194557)
----------------
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Caenorhabditis remanei C_remanei-15.0.1 (PRJNA53967)
-----------------------------------
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Caenorhabditis remanei strain PX506 (PRJNA577507)
----------------------
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Caenorhabditis latens (PRJNA248912)
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-
Caenorhabditis tropicalis (PRJNA53597)
----------
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Caenorhabditis brenneri (PRJNA20035)
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-----------------------------------
Caenorhabditis uteleia strain JU2585 (PRJEB12600)
-----------------------------------------------------
-
Caenorhabditis quiockensis strain JU2809 (PRJEB11354)
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Caenorhabditis angaria (PRJNA51225)
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-------------------------------------------
Caenorhabditis bovis (PRJEB34497)
--------------------------------------------------------------
Caenorhabditis auriculariae strain NKZ352 (PRJEB40642)
---------------------------------------------------------------
Caenorhabditis parvicauda (PRJEB12595)
------------------------------------------------------------------------
Mesorhabditis belari (PRJEB30104)
----
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-
Pristionchus pacificus strain PS312 (PRJNA12644)
-------------------
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Pristionchus exspectatus (PRJEB46690)
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--------
Pristionchus arcanus (PRJEB27334)
-------------------
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Pristionchus maxplancki (PRJEB27334)
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----------------
Pristionchus japonicus (PRJEB27334)
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Pristionchus mayeri (PRJEB27334)
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------------------------
Pristionchus entomophagus (PRJEB27334)
-------------------
----------------------------
Pristionchus fissidentatus (PRJEB27334)
--------------------------------------------
--------------------------------
Parapristionchus giblindavisi (PRJEB53331)
------------------------------------------------
Micoletzkya japonica (PRJEB27334)
----------------
-
Parascaris univalens strain PG01 (PRJNA386823)
----------------
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Parascaris equorum (PRJEB514)
----------------
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-
Ascaris lumbricoides strain Republic of Ecuador (PRJEB4950)
----------------------------------------
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Ascaris suum strain AG01 (PRJNA62057)
------------------------------
Toxocara canis strain PN_DK_2014 (PRJNA248777)
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Anisakis simplex (PRJEB496)
----------------------
-
Onchocerca volvulus strain O. volvulus Cameroon isolate (PRJEB513)
----------------------
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Onchocerca ochengi strain Ngaoundere (PRJEB1204)
------------------------------
--------
Onchocerca flexuosa strain Red Deer (PRJNA230512)
---------------------------------
Dirofilaria immitis (PRJEB1797)
-------------------------
-
Acanthocheilonema viteae (PRJEB1697)
-------------------
----
----
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Cercopithifilaria johnstoni (PRJEB47283)
-----------------------------------
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Litomosoides sigmodontis strain Bain lab strain (PRJEB3075)
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Elaeophora elaphi (PRJEB502)
----------------------------
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-
Brugia timori strain Flores island/ Indonesia (PRJEB4663)
-------------------------
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Brugia malayi strain FR3 (PRJNA10729)
----------------------------------
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Brugia pahangi strain Scotland/Glasgow (PRJEB497)
----------------------------------------
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Wuchereria bancrofti strain pt0022 (PRJNA275548)
-------------------------------------------
Loa loa strain CAT (PRJNA246086)
----------------------
-------------------------------
Thelazia callipaeda strain Switzerland/Ticino (PRJEB1205)
-------------------
-----------------------------------
Gongylonema pulchrum strain Japan/Hokkaido (PRJEB505)
------------------------------------------------------
Dracunculus medinensis (PRJEB500)
----------
----------------------------------------------
Setaria digitata strain RSCHEM2018 (PRJNA479729)
-----------------------------------------------------------
-
Syphacia muris strain Spain/Valencia (PRJEB524)
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Enterobius vermicularis strain Spain/Canary Islands (PRJEB503)
--------------------------------------------------------------------------------------------
Plectus sambesii strain ES601 (PRJNA390260)
--------------------
-
Trichinella nativa strain ISS10 (PRJNA257433)
----------------
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Trichinella sp. T6 strain ISS34 (PRJNA257433)
----------------------
-
Trichinella britovi strain ISS120 (PRJNA257433)
----------------
----
----
Trichinella sp. T8 strain ISS272 (PRJNA257433)
----------------------
-
Trichinella murrelli strain ISS417 (PRJNA257433)
----------------
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Trichinella sp. T9 strain ISS409 (PRJNA257433)
----------------------------------
Trichinella patagoniensis strain ISS2496 (PRJNA257433)
----------------
----------------
-
Trichinella nelsoni strain ISS37 (PRJNA257433)
----------------------
Trichinella spiralis strain ISS 195 (PRJNA12603)
----------------------
-
Trichinella papuae strain ISS1980 (PRJNA257433)
----------------
----------------
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Trichinella zimbabwensis strain ISS1029 (PRJNA257433)
----------
-----------------
Trichinella pseudospiralis strain ISS13 (PRJNA257433)
-------------------
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-
Trichuris suis (PRJNA179528)
-----------------------------------------
----
Trichuris trichiura strain Republic of Ecuador (PRJEB535)
------------------------------------------------------------
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Trichuris muris (PRJEB126)
-----------------------------------------------
Soboliphyme baturini strain Alaska/Dall Island (PRJEB516)
----
---------------------------------------------
Romanomermis culicivorax (PRJEB1358)
-------------------------------------------------------------------
-
Schmidtea mediterranea strain S2F19 (PRJNA885486)
----------------------
Macrostomum lignano strain DV1 (PRJNA371498)
----------------------
-
Spirometra erinaceieuropaei (PRJEB1202)
------------------------------------------
----
Schistocephalus solidus strain NST_G2 (PRJEB527)
-----------------------------
Dibothriocephalus latus (PRJEB1206)
-------------------------
-
Echinococcus granulosus strain G1 (PRJNA182977)
-------------------------
----
Echinococcus granulosus strain G1 (PRJEB121)
-------------------------
--------
Echinococcus multilocularis strain Java (PRJEB122)
-------------------------
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Echinococcus canadensis (PRJEB8992)
--------------------------------------------
--------------------
-------------------
Echinococcus oligarthrus strain DaMi1 (PRJEB31222)
-------------------------
----
-
Taenia asiatica strain TASYD01 (PRJNA299871)
-------------------------------
----
Taenia saginata strain TSAYD01 (PRJNA71493)
-------------------------------
--------
Taenia multiceps strain Gns01 (PRJNA307624)
-------------------------
----
------------
Taenia solium strain Mexico (PRJNA170813)
-------------------------------------------
Hydatigera taeniaeformis strain Spain/Canary Islands (PRJEB534)
----------------------
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-
Hymenolepis microstoma (PRJEB124)
-------------------------------------
----
Rodentolepis nana strain Japan (PRJEB508)
-----------------------------
Hymenolepis diminuta strain laboratory inbred isolate (PRJEB30942)
----------------------------------------------
Mesocestoides corti strain Specht & Voge 1965 (PRJEB510)
----------------
----
-
Gyrodactylus salaris strain Lier (PRJNA244375)
-------------------------------------------------------
----
Gyrodactylus bullatarudis strain Rox2016 (PRJNA532341)
-------------
--------------
Protopolystoma xenopodis (PRJEB1201)
-----------------------------------------
-
Schistosoma margrebowiei strain tdSchMarg1.1 (PRJEB44434)
----------------------------
Schistosoma spindale strain tdSchSpin1.1 (PRJEB44434)
----------------------------
-
Schistosoma curassoni strain tdSchCurr1.1 (PRJEB44434)
-------------------------
----
----
Schistosoma bovis strain tdSchBovi1.1 (PRJEB44434)
----
----------------------------
--------
Schistosoma guineensis strain tdSchGuin1.1 (PRJEB44434)
----------------------------
-------
------------
Schistosoma haematobium (PRJNA78265)
----------------------------------
----------------
Schistosoma intercalatum strain tdSchInte1.1 (PRJEB44434)
----------------------
----
-----------------------
Schistosoma mattheei strain tdSchMatt1.1 (PRJEB44434)
---------------------------------------------------
-
Schistosoma rodhaini strain tdSchRodh1.1 (PRJEB44434)
-------------------------
-------
Schistosoma mansoni (PRJEA36577)
-----------------------------------------------------------
Schistosoma turkestanicum strain tdSchTurk1.1 (PRJEB44434)
-------------------------
------------------------------------
Schistosoma japonicum strain HuSjv2 (PRJNA520774)
-------------------------------
-
Trichobilharzia regenti strain tdTriRege1.1 (PRJEB44434)
-------------
-----------------------------------------
----
Trichobilharzia szidati strain tdTriSzid1.1 (PRJEB44434)
-----------------------------
Heterobilharzia americana strain tdHetHame1.1 (PRJEB44434)
-------------------------
-
Fasciola hepatica Fasciola_10x_pilon (PRJEB25283)
-------------------
----
----
Fasciola hepatica F_hepatica_1.0.allpaths.pg (PRJNA179522)
----------------------
--------
Fasciola gigantica strain Uganda_cow_1 (PRJNA230515)
-
-------------------
------------
Fasciolopsis buski strain HT (PRJNA284521)
------------------------------------
Echinostoma caproni strain Egypt (PRJEB1207)
-------------------------------------
Dicrocoelium dendriticum strain tdDicDend1.1 (PRJEB44434)
---------------------------------------
----
-
Opisthorchis viverrini (PRJNA222628)
----------------------
----
Opisthorchis felineus strain AK-0245 (PRJNA413383)
----------------------
--------
Clonorchis sinensis strain Cs-k2 (PRJNA386618)
-------------------
------------
Paragonimus westermani (PRJNA454344)
-------------------------------
Atriophallophorus winterbourni strain NZ2018 (PRJNA636673)
----------------------------------------------------------------------------------------------------
-
Drosophila melanogaster
----------------
Ixodes scapularis strain Wikel
-----------------------------------------------------------------------------------------------------
-
Capitella teleta
-------------
Crassostrea gigas
----------------------------------------------------------------------------------------------------------
-
Trichoplax adhaerens strain Grell-BS-1999
----------
Nematostella vectensis strain CH2 x CH6
---------------------------------------------------------------------------------------------------------------
Amphimedon queenslandica
------------------------------------------------------------------------------------------------------------
-
Saccharomyces cerevisiae S288C
----
Schizosaccharomyces pombe 972h-