WormBase ParaSite HomeVersion: WBPS19 (WS291)-  Archive: WBPS18

Comparative Genomics

For full details of The protein tree pipeline and the subsequent prediction of homologues, see the Ensembl Compara documentation.

This page provides a summary of the Ensembl phylogenetic analysis of protein families. The following views are available:

Overall Summary

Legend
Internal nodes (ancestral taxa) Node types Speciations Duplications Dubious nodes
Leaves (extant species) Gene tree coverage Genes in multi-species trees Genes in single-species trees Orphaned genes
Gene QC Validated genes Short genes Long genes Split genes
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-
Mus musculus reference (CL57BL6) strain
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Rattus norvegicus strain BN/NHsdMcwi
----
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Homo sapiens
------------------------------------------------------------------------------------
------------
Danio rerio
-------------------
Ciona intestinalis
-------------------------------------------------------
-
Macrostomum lignano strain DV1 (PRJNA371498)
----------
Schmidtea mediterranea strain S2F19 (PRJNA885486)
----------
-
Schistocephalus solidus strain NST_G2 (PRJEB527)
------------------------------
----
Spirometra erinaceieuropaei (PRJEB1202)
-----------------
Dibothriocephalus latus (PRJEB1206)
-------------
-
Echinococcus granulosus strain G1 (PRJEB121)
-------------
----
Echinococcus granulosus strain EgG1s_protoscolex (PRJNA754835)
-------------
--------
Echinococcus multilocularis strain Java (PRJEB122)
-------------
------------
Echinococcus canadensis (PRJEB8992)
--------------------------
-------------------
Echinococcus oligarthrus strain DaMi1 (PRJEB31222)
----------------
----
-
Taenia saginata strain TSAYD01 (PRJNA71493)
----------------------
----
Taenia asiatica strain TASYD01 (PRJNA299871)
-----------------------------------
----------------
--------
Taenia multiceps strain Gns01 (PRJNA307624)
-------------------
----
------------
Taenia solium strain Mexico (PRJNA170813)
-------------------------------------
Hydatigera taeniaeformis strain Spain/Canary Islands (PRJEB534)
----------------
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-
Hymenolepis microstoma (PRJEB124)
-------------------------------
----
Rodentolepis nana strain Japan (PRJEB508)
-----------------------
Hymenolepis diminuta strain laboratory inbred isolate (PRJEB30942)
----------------------------------------
Mesocestoides corti strain Specht & Voge 1965 (PRJEB510)
------------------------------------
-
Schistosoma rodhaini strain tdSchRodh1.1 (PRJEB44434)
-------------------
Schistosoma mansoni (PRJEA36577)
----------------
--------------------
-
Schistosoma spindale strain tdSchSpin1.1 (PRJEB44434)
-------------------------
Schistosoma margrebowiei strain tdSchMarg1.1 (PRJEB44434)
-------------------------
-
Schistosoma curassoni strain tdSchCurr1.1 (PRJEB44434)
-------------------
----
----
Schistosoma bovis strain tdSchBovi1.1 (PRJEB44434)
----------
----
-------
--------
Schistosoma guineensis strain tdSchGuin1.1 (PRJEB44434)
----------------------
------------
Schistosoma haematobium (PRJNA78265)
-------------
-------
----------------
Schistosoma intercalatum strain tdSchInte1.1 (PRJEB44434)
--------------------------------------
Schistosoma mattheei strain tdSchMatt1.1 (PRJEB44434)
-------------
-----------------------------------
Schistosoma turkestanicum strain tdSchTurk1.1 (PRJEB44434)
---------------------------------------------------
Schistosoma japonicum strain F4M4 (PRJNA724792)
-------------------
-
Trichobilharzia regenti strain tdTriRege1.1 (PRJEB44434)
--------------------------------------------
----
Trichobilharzia szidati strain tdTriSzid1.1 (PRJEB44434)
--------------------
Heterobilharzia americana strain tdHetHame1.1 (PRJEB44434)
----------------
-
Fasciola hepatica strain S (PRJEB58756)
-------------
----
----
Fasciola hepatica F_hepatica_1.0.allpaths.pg (PRJNA179522)
-------------------
--------
Fasciola gigantica strain Uganda_cow_1 (PRJNA230515)
-----------------------
------------
Echinostoma caproni strain Egypt (PRJEB1207)
---------------------------------
Fasciolopsis buski strain HT (PRJNA284521)
----------------------------------
Dicrocoelium dendriticum strain tdDicDend1.1 (PRJEB44434)
----------------------
-
Opisthorchis felineus strain AK-0245 (PRJNA413383)
--------------------------------
--------
----
Opisthorchis viverrini (PRJNA222628)
----------
--------------
Clonorchis sinensis strain Cs-k2 (PRJNA386618)
----------------
----
-
Paragonimus skrjabini miyazakii strain HASH(0x3fae100) (PRJNA245325)
----------------------
----
Paragonimus heterotremus strain HASH(0x251c900) (PRJNA284523)
-------------
----
--------
Paragonimus kellicotti strain Missouri (PRJNA179523)
-------
------------------
Paragonimus westermani (PRJNA454344)
--------------------------------
Atriophallophorus winterbourni strain NZ2018 (PRJNA636673)
----------------
-
Gyrodactylus bullatarudis strain Rox2016 (PRJNA532341)
-------------------------------------------------
----
Gyrodactylus salaris strain Lier (PRJNA244375)
-----------------
Protopolystoma xenopodis (PRJEB1201)
-------------
-
Trichinella papuae strain ISS1980 (PRJNA257433)
-------------------------
----
Trichinella zimbabwensis strain ISS1029 (PRJNA257433)
--------------------
Trichinella pseudospiralis strain ISS13 (PRJNA257433)
-------------
----------------
-
Trichinella nelsoni strain ISS37 (PRJNA257433)
----------------------
Trichinella spiralis strain ISS 195 (PRJNA12603)
----------------
--------
-
Trichinella nativa strain ISS10 (PRJNA257433)
-------------------
----
Trichinella sp. T6 strain ISS34 (PRJNA257433)
-------------------------
-
Trichinella murrelli strain ISS417 (PRJNA257433)
-------------
----
----
----
Trichinella sp. T9 strain ISS409 (PRJNA257433)
----------------------
-
Trichinella sp. T8 strain ISS272 (PRJNA257433)
----------------------
Trichinella britovi strain ISS120 (PRJNA257433)
-------------
-------------------
Trichinella patagoniensis strain ISS2496 (PRJNA257433)
----------------------
-
Trichuris suis (PRJNA179528)
-------------
-----------------------
----
Trichuris trichiura strain Republic of Ecuador (PRJEB535)
--------------------------
Trichuris muris (PRJEB126)
-----------------------------------------------------
-----------------------------------
Soboliphyme baturini strain Alaska/Dall Island (PRJEB516)
---------------------------------------------------
Mesodorylaimus sp. YZB2_4 strain HASH(0x248fae0) (PRJNA953805)
----------------------------------------------------
Romanomermis culicivorax (PRJEB1358)
----------------
-
Microlaimidae sp. YZB2_3 strain HASH(0x2417920) (PRJNA953805)
--------------------
----
Epsilonema sp. ZAB3_2 strain HASH(0x3d292b8) (PRJNA953805)
-----------------------
Ptycholaimellus sp. GST1_10 strain HASH(0x3758970) (PRJNA953805)
----------------------------------------------------------------------------
----
-
Rhynchonema sp. JSB1_4 strain HASH(0x2bf7b90) (PRJNA953805)
----------------------
----
Theristus sp. LFF4_11 strain HASH(0x3bf0af0) (PRJNA953805)
-------------------
--------
Sabatieria punctata strain HASH(0x2d80ae0) (PRJNA953805)
----------------------
-
Paralinhomoeus sp. GSCO2_6 strain HASH(0x27cc970) (PRJNA953805)
-------------------
----
Linhomoeus sp. GSCO2_2 strain HASH(0x3fdfb90) (PRJNA953805)
-----------------------
Plectus sambesii strain ES601 (PRJNA390260)
-------------------
-
Ascaris suum strain AG01 (PRJNA62057)
-------------------
----
Ascaris lumbricoides strain Republic of Ecuador (PRJEB4950)
-------------------
----
-
Parascaris univalens strain PG01 (PRJNA386823)
----------
-------------------------------
-------
Parascaris equorum (PRJEB514)
------------------------------
Toxocara canis strain PN_DK_2014 (PRJNA248777)
-------------------------------
Anisakis simplex (PRJEB496)
-------------------
-
Cercopithifilaria johnstoni (PRJEB47283)
----
----------------
----
Acanthocheilonema viteae (PRJEB1697)
--------------------------
--------
Litomosoides sigmodontis strain Bain lab strain (PRJEB3075)
---------------------------------
Elaeophora elaphi (PRJEB502)
----------------------
----
-
Brugia timori strain Flores island/ Indonesia (PRJEB4663)
-------------------
----------
----
Brugia malayi strain FR3 (PRJNA10729)
-------------------------------
--------
Brugia pahangi strain Scotland/Glasgow (PRJEB497)
-------------------------
----
------------
Wuchereria bancrofti strain 17-3 (PRJNA275548)
-------------------------------------------
Loa loa strain CAT (PRJNA246086)
-------------------------------
-
Onchocerca ochengi strain Ngaoundere (PRJEB1204)
-------------------------
-------
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Onchocerca volvulus strain O. volvulus Cameroon isolate (PRJEB513)
-------------------------------------------
---------------------
--------
Onchocerca flexuosa strain Red Deer (PRJNA230512)
-------------
-------------
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Dirofilaria immitis (PRJEB1797)
-------------------------
-------------------------------
Thelazia callipaeda strain Switzerland/Ticino (PRJEB1205)
----------------------
-----------------------------------
Gongylonema pulchrum strain Japan/Hokkaido (PRJEB505)
---------------------------------------------------------
Dracunculus medinensis (PRJEB500)
----------------------------------------------------------
Setaria digitata strain RSCHEM2018 (PRJNA479729)
-----------------------------------------------------------
-
Syphacia muris strain Spain/Valencia (PRJEB524)
-------------------
Enterobius vermicularis strain Spain/Canary Islands (PRJEB503)
-------------------
-
Trissonchulus latispiculum strain HASH(0x3ac59f0) (PRJNA953805)
-------------------------------------------------------------------------------
----
Trissonchulus sp. WLG1_4 strain HASH(0x3ccc910) (PRJNA953805)
----------------------
-
Trileptium ribeirensis strain HASH(0x26e2a80) (PRJNA953805)
----------------------
Enoplolaimus lenunculus strain HASH(0x26313f8) (PRJNA953805)
----------------------
-
Strongyloides ratti (PRJEB125)
----------------------
----
Strongyloides stercoralis strain PV001 (PRJNA930454)
----------------------
----
-
Strongyloides venezuelensis (PRJEB530)
--------------------------------------------------
-------
Strongyloides papillosus strain LIN (PRJEB525)
------------------------------------
Parastrongyloides trichosuri strain KNP (PRJEB515)
-------------------------------------
Rhabditophanes sp. KR3021 strain kr 3021 (PRJEB1297)
-------------------------
-
Panagrolaimus sp. PS1159 (PRJEB32708)
-------------------------
----
Panagrolaimus davidi (PRJEB32708)
-------------------------
----
-
Panagrolaimus superbus (PRJEB32708)
-------------------------------
Panagrolaimus sp. ES5 (PRJEB32708)
-------------------------
------------
Panagrolaimus sp. JU765 (PRJEB32708)
-------------------------------
Halicephalobus mephisto strain m2B (PRJNA528747)
----------------------
------------------------
------------
-
Panagrellus redivivus (PRJNA186477)
-------------
-------------------
Halicephalobus sp. NKZ332 (PRJNA555616)
--------------------------------------------
Acrobeloides nanus (PRJEB26554)
----------------------------
-
Globodera pallida strain D383 (PRJNA764088)
----------------------------
----
Globodera pallida strain Lindley (PRJEB123)
----------------------------------------
--------
Globodera rostochiensis strain Ro1 (PRJEB13504)
-----------------------------------
-
Heterodera schachtii strain Bonn (PRJNA522950)
-------------------------------
Heterodera glycines strain TN10 (PRJNA381081)
-------------------------------
-
Meloidogyne arenaria strain A2-O Okinawa_01 (PRJNA438575)
----------------------
----
----
----
Meloidogyne javanica strain VW4 (PRJNA340324)
-------------------------------
----
-
Meloidogyne incognita (PRJEB8714)
----------
----------------------
-------
Meloidogyne floridensis strain SJF1 (PRJNA340324)
----------------------------
-------
---------------
Meloidogyne enterolobii strain Swiss
-----------------------------------
-------------
-------------------
Meloidogyne hapla strain VW9 (PRJNA29083)
-----------------------------------------------------
Meloidogyne graminicola (PRJNA411966)
----------------------------
---------------------------
Meloidogyne chitwoodi strain Race1 (PRJNA666745)
----------------------------------------------------------
-
Ditylenchus destructor strain Dd01 (PRJNA312427)
----------------------------------
Ditylenchus dipsaci strain pooled J2 (PRJNA498219)
-------------------------
------------------------------------
Bradynema listronoti strain AAFC-BrLi-01_J3_LR_R9 (PRJNA842945)
----------------------------
-
Aphelenchoides fujianensis strain Dali (PRJNA834627)
----------------------------
----
Aphelenchoides besseyi strain APVT (PRJNA834627)
-------------------------------------------------
--------
Aphelenchoides bicaudatus strain Fsh (PRJNA834627)
----------------------------
-
Bursaphelenchus xylophilus strain Ka4C1 (PRJEB40022)
-------------------------
----
Bursaphelenchus xylophilus ASM23113v1_submitted (PRJEA64437)
-----------------------------
Bursaphelenchus okinawaensis strain SH1 (PRJEB40023)
-------------------------
-
Steinernema scapterisci (PRJNA204942)
----------------
-------
----
Steinernema carpocapsae (PRJNA202318)
-------------------------------------------------------
----
-
Steinernema monticolum (PRJNA205067)
----------------------
Steinernema feltiae strain NW (PRJNA353610)
-----------------------
-
Steinernema glaseri (PRJNA204943)
-------------------
Steinernema hermaphroditum strain PS9179 (PRJNA982879)
-------------------
-
Pristionchus exspectatus (PRJEB46690)
----
----------------
----
Pristionchus pacificus strain PS312 (PRJNA12644)
----------------------
--------
Pristionchus arcanus (PRJEB27334)
----------------------
------------
Pristionchus maxplancki (PRJEB27334)
----------------------
----------------
Pristionchus japonicus (PRJEB27334)
----------------------
--------------------
Pristionchus mayeri (PRJEB27334)
----------------------
------------------------
Pristionchus entomophagus (PRJEB27334)
----------------------
----------------------------
Pristionchus fissidentatus (PRJEB27334)
----------------------
--------------------------------
Parapristionchus giblindavisi (PRJEB53331)
---------------------------------------------------------
Micoletzkya japonica (PRJEB27334)
----------------------------------------------
----
-
Diplogasteroides magnus strain TMG144 (PRJNA655932)
----------------------------
----
Allodiplogaster sudhausi strain HASH(0x2b14c20) (PRJEB48369)
-------------------------------------------------
--------
Koerneria luziae strain NKZ323 (PRJNA655932)
---------------------------------
Levipalatum texanum strain TMG5 (PRJNA655932)
-----------------------------------------------------------------------------
-
Mesorhabditis belari strain JU2817 (PRJEB61636)
----------------------------
Mesorhabditis spiculigera strain AF72 (PRJEB59059)
----------------------------
-
Caenorhabditis waitukubuli strain NIC564 (PRJEB12602)
----------------------------
----
Caenorhabditis panamensis (PRJEB28259)
----------------------------
--------
Caenorhabditis becei strain QG2083 (PRJEB28243)
------------------------------------
------------
Caenorhabditis sulstoni strain JU2788 (PRJEB12601)
-------------------------------------------
Caenorhabditis japonica (PRJNA12591)
-------------------------------
-
Caenorhabditis remanei C_remanei-15.0.1 (PRJNA53967)
-----------------------------------
----
Caenorhabditis remanei strain PX506 (PRJNA577507)
----------
----------------
-----------
Caenorhabditis latens (PRJNA248912)
-------------------------------
----
-
Caenorhabditis tribulationis strain JU2818 (PRJEB12608)
-------------------------------------
----
Caenorhabditis zanzibari strain JU2190 (PRJEB12596)
----------------------
----------
----
--------
Caenorhabditis sinica (PRJNA194557)
--------------------------------------------
-
Caenorhabditis nigoni strain JU1422 (PRJNA384657)
----------------------------
----
-------
Caenorhabditis briggsae (PRJNA10731)
-------------------------------------------------
-
Caenorhabditis brenneri (PRJNA20035)
-------------------------------------
Caenorhabditis tropicalis (PRJNA53597)
----------------------------
-----------------------
-
Caenorhabditis elegans strain N2 (PRJNA13758)
-------------------------------------
Caenorhabditis inopinata (PRJDB5687)
----------------------------
-----------------------------------
Caenorhabditis uteleia strain JU2585 (PRJEB12600)
--------------------------------------------------------------
-
Caenorhabditis quiockensis strain JU2809 (PRJEB11354)
----
-------------------------
-------
Caenorhabditis angaria (PRJNA51225)
-------------------
----------
-------------------------------------------
Caenorhabditis bovis (PRJEB34497)
----------------------------
-----------------------------------------------
Caenorhabditis auriculariae strain NKZ352 (PRJEB40642)
------------------------------------------------------------------------------
Caenorhabditis parvicauda (PRJEB12595)
-------------------------
------------------------------------------------
-
Diploscapter coronatus strain PDL0010 (PRJDB3143)
----------------------------
Diploscapter pachys strain PF1309 (PRJNA280107)
----------------------------
-
Oscheius tipulae Oscheius_tipulae_assembly_v2 (PRJEB15512)
-------------------
------------------------------------------------
----
Oscheius tipulae strain CEW1 (PRJNA644888)
-----------------------------
Auanema sp. JU1783 strain HASH(0x208d358) (PRJEB51845)
-------------------------
-
Cylicocyclus nassatus strain Nouzilly (PRJEB63274)
-------------------------
----
Cylicostephanus goldi strain England/Cheshire (PRJEB498)
-------------------------
--------
Strongylus vulgaris strain USA/Kentucky (PRJEB531)
-------------------------
------------
Oesophagostomum dentatum strain OD-Hann (PRJNA72579)
-------------------------
----------------
Parelaphostrongylus tenuis strain MNPRO001-30 (PRJNA729714)
-------------------------
--------------------
Necator americanus strain HASH(0x2e55d98) (PRJNA1007425)
-------------------------------
-
Ancylostoma caninum strain Baltimore (PRJNA72585)
----------------------------------------
----
Ancylostoma duodenale strain Baltimore (PRJNA72581)
-------------------------
--------
Ancylostoma ceylanicum strain HASH(0x3172748) (PRJNA231479)
-
----------------------------
-
Haemonchus placei strain MHpl1 (PRJEB509)
-------------------------------
----
Haemonchus contortus (PRJEB506)
----------------------------------------
--------
Teladorsagia circumcincta (PRJNA72569)
-------------------------
--------
-
Heligmosomoides polygyrus (PRJEB15396)
-------------------------------
Nippostrongylus brasiliensis strain HASH(0x26b8b58) (PRJNA994163)
-------------------------------
-
Angiostrongylus costaricensis strain Costa Rica (PRJEB494)
----------------------------------------------
-------
----
Angiostrongylus vasorum strain ZH-2019-22 (PRJNA663250)
-----------------------------------------
--------
Angiostrongylus cantonensis strain Guangzhou (PRJNA350391)
---------------------------------
Dictyocaulus viviparus (PRJNA72587)
------------------------------------------------------
Heterorhabditis bacteriophora strain M31e (PRJNA13977)
-----------------------------------------------------------------------------------
Bunonema sp. RGD898 (PRJNA655932)
----------------------------------------------------------------------------------------------------
-
Ixodes scapularis strain Wikel
----------------
Drosophila melanogaster
-----------------------------------------------------------------------------------------------------
-
Capitella teleta
-------------
Crassostrea gigas
----------------------------------------------------------------------------------------------------------
-
Trichoplax adhaerens strain Grell-BS-1999
----------
Nematostella vectensis strain CH2 x CH6
---------------------------------------------------------------------------------------------------------------
Amphimedon queenslandica
------------------------------------------------------------------------------------------------------------
-
Schizosaccharomyces pombe 972h-
----
Saccharomyces cerevisiae S288C