WormBase ParaSite HomeVersion: WBPS12 (WS267)

Comparative Genomics

For full details of The protein tree pipeline and the subsequent prediction of homologues, see the Ensembl Compara documentation.

This page provides a summary of the Ensembl phylogenetic analysis of protein families. The following views are available:

Gene tree coverage and Gene QC (per species)

Quick links: Platyhelminthes

Nematoda

Species# Genes# Sequences# Genes in a tree# Orphaned genes# Genes in a single-species tree# Genes in a multi-species treeCoverage# species-specific duplications# Gene splits
Acanthocheilonema viteae (PRJEB4306)10397103979977420659912
40045
Acrobeloides nanus (PRJEB26554)3298432984280784906710820970
13745114
Ancylostoma caninum Baltimore (PRJNA72585)301983019828119207948327636
52741322
Ancylostoma ceylanicum HY135 (PRJNA231479)3668736687283118376427924032
7115302
Ancylostoma ceylanicum A_ceylanicum1.3.ec.cg.pg (PRJNA72583)117831178311396387911387
252279
Ancylostoma duodenale Baltimore (PRJNA72581)274852748525634185123525399
4003600
Angiostrongylus cantonensis Republic of China (PRJEB493)145201452013233128710813125
952105
Angiostrongylus costaricensis Costa Rica (PRJEB494)13417134171237010478312287
649145
Anisakis simplex (PRJEB496)2097120971176593312124116418
331224
Ascaris lumbricoides Republic of Ecuador (PRJEB4950)236042360418969463524318726
131597
Ascaris suum ASM18702v3 (PRJNA62057)167781677814221255711414107
579270
Ascaris suum A. suum Australian isolate (PRJNA80881)18542185421616623762316143
331563
Brugia malayi FR3 (PRJNA10729)1095910959103875722410363
36928
Brugia pahangi Scotland/Glasgow (PRJEB497)14674146741354711279213455
103960
Brugia timori Flores island/ Indonesia (PRJEB4663)16203162031331628872913287
53931
Bursaphelenchus xylophilus (PRJEA64437)1770417704135994105252011079
353942
Caenorhabditis angaria (PRJNA51225)2797027970216226348280618816
5255204
Caenorhabditis brenneri (PRJNA20035)3070530705277552950287324882
9666145
Caenorhabditis briggsae (PRJNA10731)21168211682036780118220185
125425
Caenorhabditis elegans N2 (PRJNA13758)202132021318735147884917886
31409
Caenorhabditis japonica (PRJNA12591)2993129931264583473464821810
9894204
Caenorhabditis latens (PRJNA248912)248552485522207264823521972
1458134
Caenorhabditis nigoni JU1422 (PRJNA384657)2916729167268712296137425497
5163326
Caenorhabditis remanei ASM164373v2 (PRJNA248909)24977249772310118769723004
520141
Caenorhabditis remanei CaeRem1.0 (PRJNA248911)248672486722980188714322837
854154
Caenorhabditis remanei C_remanei-15.0.1 (PRJNA53967)31436314363083759949730340
3471329
Caenorhabditis sinica (PRJNA194557)3469634696305454151425826287
9153148
Caenorhabditis sp. 34 TK-2017 (PRJDB5687)2144321443200201423170918311
567588
Caenorhabditis tropicalis (PRJNA53597)2232622326196442682140918235
2900268
Cylicostephanus goldi England/Cheshire (PRJEB498)139061390611632227417111461
75824
Dictyocaulus viviparus nDv.1.0 (PRJEB5116)14306143061341589165112764
119486
Dictyocaulus viviparus D_viviparus_9.2.1.ec.pg (PRJNA72587)1351413514126538612512628
270573
Diploscapter coronatus PDL0010 (PRJDB3143)3406334063315242539231929205
9125302
Diploscapter pachys PF1309 (PRJNA280107)273412734123208413353822670
2017334
Dirofilaria immitis (PRJEB1797)12857128571132015379311227
621102
Ditylenchus destructor Dd01 (PRJNA312427)139311393111057287412009857
207445
Dracunculus medinensis (PRJEB500)1096910969979611735819215
838196
Elaeophora elaphi (PRJEB502)104101041010180230010180
9689
Enterobius vermicularis Spain/Canary Islands (PRJEB503)128951289510613228231010303
68343
Globodera pallida Lindley (PRJEB123)1640316403147661637106313703
4026100
Globodera rostochiensis Ro1 (PRJEB13504)143081430812934137428612648
1290173
Gongylonema pulchrum Japan/Hokkaido (PRJEB505)2715827158217555403206319692
5382106
Haemonchus contortus HCON_V4 (PRJEB506)19430194301844498656817876
3598168
Haemonchus contortus H. contortus Australian isolate (PRJNA205202)236102361020358325229820060
2920192
Haemonchus placei MHpl1 (PRJEB509)219282192818119380922917890
1059141
Heligmosomoides polygyrus Scotland/Edinburgh (PRJEB1203)2745927459249092550151623393
5144231
Heligmosomoides polygyrus nHp_v2.0 (PRJEB15396)234712347119208426345418754
1435180
Heterorhabditis bacteriophora M31e (PRJNA13977)2096420964138417123278311058
2820516
Litomosoides sigmodontis Bain lab strain (PRJEB3075)10246102469562684159547
23798
Loa loa LLoa-hgap-1 (PRJNA246086)12473124731199547811811877
1276198
Loa loa L. loa Cameroon isolate (PRJNA60051)14908149081263522738712548
427396
Meloidogyne arenaria ASM90000398v1 (PRJEB8714)10126910126997926334384797079
139372361
Meloidogyne arenaria ASM313380v1 (PRJNA438575)76700767007572098076374957
156825510
Meloidogyne floridensis (PRJEB6016)4993849938365851335388435701
3566302
Meloidogyne graminicola (PRJNA411966)108951089599809152419739
63684
Meloidogyne hapla VW9 (PRJNA29083)144201442013251116927812973
1254465
Meloidogyne incognita (PRJEB8714)4371843718430856335743028
34691739
Meloidogyne javanica (PRJEB8714)972089720893940326855893382
106232500
Necator americanus N. amaericanus Hunan isolate (PRJNA72135)191531915316399275426216137
1305730
Nippostrongylus brasiliensis (PRJEB511)2279622796199592837107618883
4059125
Oesophagostomum dentatum OD-Hann (PRJNA72579)252912529123273201890522368
5951409
Onchocerca flexuosa Spain/Cordoba (PRJEB512)16119161191457815411914559
82551
Onchocerca flexuosa O_flexuosa_1.0.allpaths.pg.lrna (PRJNA230512)81408140773740347733
85106
Onchocerca ochengi Ngaoundere (PRJEB1204)1281612816121256912712098
21674
Onchocerca ochengi nOo.2.0 (PRJEB1809)1399013990134645266713397
133867
Onchocerca volvulus O. volvulus Cameroon isolate (PRJEB513)12117121171067014473710633
23438
Oscheius tipulae (PRJEB15512)1462614626124212205103711384
194275
Panagrellus redivivus (PRJNA186477)2424924249180506199589512155
682566
Parascaris equorum (PRJEB514)14472144721014143311310128
23541
Parascaris univalens (PRJNA386823)143251432512595173013612459
606120
Parastrongyloides trichosuri KNP (PRJEB515)1501015010133221688108512237
189640
Plectus sambesii (PRJNA390260)3906739067329856082794025045
16982199
Pristionchus exspectatus RS5522B (PRJEB6009)2464224642206433999111419529
4098405
Pristionchus pacificus PS312 (PRJNA12644)2551725517205115006180218709
488871
Rhabditophanes sp. KR3021 kr 3021 (PRJEB1297)1349613496117271769149210235
259966
Romanomermis culicivorax (PRJEB1358)483764837626883214931604810835
14009301
Soboliphyme baturini Alaska/Dall Island (PRJEB516)1319313193875044436078143
99921
Steinernema carpocapsae (PRJNA202318)2831328313216076706130220305
3037109
Steinernema feltiae (PRJNA204661)3345933459256807779470820972
7181248
Steinernema glaseri (PRJNA204943)34142341422370510437330520400
5544288
Steinernema monticolum (PRJNA205067)3600736007270029005388323119
6844223
Steinernema scapterisci (PRJNA204942)3137831378242677111191022357
497591
Strongyloides papillosus LIN (PRJEB525)18456184561746199561016851
3092117
Strongyloides ratti (PRJEB125)12464124641211534919011925
63965
Strongyloides stercoralis PV0001 (PRJEB528)13098130981261548339312222
104049
Strongyloides venezuelensis (PRJEB530)169041690415708119652515183
2007223
Strongylus vulgaris USA/Kentucky (PRJEB531)209922099217952304064817304
236839
Syphacia muris Spain/Valencia (PRJEB524)1111811118949316251429351
26530
Teladorsagia circumcincta (PRJNA72569)255722557223815175772523090
6285673
Thelazia callipaeda Switzerland/Ticino (PRJEB1205)109121091299659471959770
28873
Toxocara canis Brazil/Equador (PRJEB533)202642026417934233026817666
131878
Toxocara canis PN_DK_2014 (PRJNA248777)18596185961629623009716199
919154
Trichinella britovi ISS120 (PRJNA257433)16058160581536069821515145
193779
Trichinella murrelli ISS417 (PRJNA257433)1485214852142555979714158
109683
Trichinella nativa T_nativa_rf_gd (PRJNA179527)10175101759911264239888
617127
Trichinella nativa ISS10 (PRJNA257433)1354513545125529938512467
79963
Trichinella nelsoni ISS37 (PRJNA257433)132291322911994123513611858
83052
Trichinella papuae ISS1980 (PRJNA257433)118371183710589124824110348
98337
Trichinella patagoniensis ISS2496 (PRJNA257433)153191531914200111924313957
156550
Trichinella pseudospiralis ISS13 (PRJNA257433)126591265910579208013699210
199739
Trichinella sp. T6 ISS34 (PRJNA257433)15241152411455268920814344
164870
Trichinella sp. T8 ISS272 (PRJNA257433)1491914919143046156514239
95384
Trichinella sp. T9 ISS409 (PRJNA257433)1311113111125225899012432
86559
Trichinella spiralis ISS 195 (PRJNA12603)163801638014781159920414577
2172370
Trichinella spiralis ISS3 (PRJNA257433)147371473713477126038713090
145226
Trichinella zimbabwensis ISS1029 (PRJNA257433)1476414764129221842114311779
260143
Trichuris muris (PRJEB126)1499514995133701625122612144
4271125
Trichuris suis T_suis_1.0.allpaths (PRJNA179528)98319831893789408937
171323
Trichuris suis DCEP-RM93M (PRJNA208415)14436144361357785921013367
106482
Trichuris suis DCEP-RM93F (PRJNA208416)14261142611354871310713441
100197
Trichuris trichiura Republic of Ecuador (PRJEB535)965096509077573948983
67847
Wuchereria bancrofti W_bancrofti_Jakarta_v2_0_4 (PRJEB536)1305813058123007583212268
48253
Wuchereria bancrofti pt0022 (PRJNA275548)1106811068107343341610718
685207

Platyhelminthes

Species# Genes# Sequences# Genes in a tree# Orphaned genes# Genes in a single-species tree# Genes in a multi-species treeCoverage# species-specific duplications# Gene splits
Clonorchis sinensis Henan (PRJDA72781)136341363412166146830211864
173023
Dibothriocephalus latus (PRJEB1206)199661996616606336059016016
227618
Echinococcus canadensis (PRJEB8992)1143211432109384949710841
75165
Echinococcus granulosus G1 (PRJEB121)10245102459995250189977
15596
Echinococcus granulosus G1 (PRJNA182977)11319113191025610638510171
207135
Echinococcus multilocularis Java (PRJEB122)1066310663103173467710240
58778
Echinostoma caproni Egypt (PRJEB1207)1860718607154483159181513633
278150
Fasciola hepatica Fasciola_10x_pilon (PRJEB25283)970897088905803748831
26625
Fasciola hepatica F_hepatica_1.0.allpaths.pg (PRJNA179522)157391573913858188113313725
778894
Gyrodactylus salaris Lier (PRJNA244375)1543615436810973278337276
93940
Hydatigera taeniaeformis Spain/Canary Islands (PRJEB534)116491164910401124818510216
54824
Hymenolepis diminuta Denmark (PRJEB507)1127111271103319404039928
67054
Hymenolepis microstoma (PRJEB124)101391013996075323689239
106743
Hymenolepis nana Japan (PRJEB508)137771377712375140275111624
166239
Macrostomum lignano dv1 (PRJNA284736)244062440623563843101922544
5422260
Macrostomum lignano Mlig_3_7 (PRJNA371498)490134901348110903679341317
23618112
Mesocestoides corti Specht & Voge 1965 (PRJEB510)1061410614916014544418719
81040
Opisthorchis viverrini (PRJNA222628)1635616356126293727114811481
214256
Protopolystoma xenopodis (PRJEB1201)37906379061329224614295910333
28313
Schistocephalus solidus NST_G2 (PRJEB527)2022820228178732355176916104
506630
Schistosoma curassoni Senegal/Dakar (PRJEB519)23546235462107524719120984
167941
Schistosoma haematobium (PRJNA78265)1114011140107773635010727
490129
Schistosoma japonicum China/Anhui (PRJEA34885)127381273811726101238111345
906101
Schistosoma mansoni (PRJEA36577)10144101449743401909653
65213
Schistosoma margrebowiei Zambia (PRJEB522)2618926189242921897116523127
538491
Schistosoma mattheei Zambia/Denwood (PRJEB523)22997229972046425338220382
112358
Schistosoma rodhaini Republic of Burundi (PRJEB526)240892408920733335685919874
343061
Schmidtea mediterranea S2F2 (PRJNA12585)2985029850250274823813516892
12509330
Spirometra erinaceieuropaei (PRJEB1202)3955739557335196038471928800
1525619
Taenia asiatica South Korea (PRJEB532)10331103319808523229786
150101
Taenia asiatica TASYD01 (PRJNA299871)1332213322130872359312994
151824
Taenia multiceps (PRJNA307624)128901289011828106273711091
288071
Taenia saginata TSAYD01 (PRJNA71493)1316113161129262357612850
129238
Taenia solium Mexico (PRJNA170813)12481124811144510365611389
410294
Trichobilharzia regenti (PRJEB4662)221852218517440474566716773
161710