WormBase ParaSite HomeVersion: WBPS17 (WS282)

Comparative Genomics

For full details of The protein tree pipeline and the subsequent prediction of homologues, see the Ensembl Compara documentation.

This page provides a summary of the Ensembl phylogenetic analysis of protein families. The following views are available:

Gene tree coverage and Gene QC (per species)

Quick links: Platyhelminthes

Nematoda

Species# Genes# Sequences# Genes in a tree# Orphaned genes# Genes in a single-species tree# Genes in a multi-species treeCoverage# species-specific duplications# Gene splits
Acanthocheilonema viteae (PRJEB1697)10397103979939458739866
4190
Acrobeloides nanus (PRJEB26554)3298432984275425442699720545
126410
Ancylostoma caninum strain Baltimore (PRJNA72585)301983019827764243465027114
55440
Ancylostoma ceylanicum strain HY135 (PRJNA231479)3668736687275919096434523246
72870
Ancylostoma duodenale strain Baltimore (PRJNA72581)274852748524929255654324386
40530
Angiostrongylus cantonensis strain Guangzhou (PRJNA350391)1031410314100442707299315
14870
Angiostrongylus costaricensis strain Costa Rica (PRJEB494)134171341712345107244811897
8720
Angiostrongylus vasorum strain ZH-2019-22 (PRJNA663250)137041370411948175657111377
11010
Anisakis simplex (PRJEB496)2097120971171943777154715647
31790
Ascaris lumbricoides strain Republic of Ecuador (PRJEB4950)236042360418062554236617696
15410
Ascaris suum strain AG01 (PRJNA62057)167781677813994278412913865
7110
Brugia malayi strain FR3 (PRJNA10729)1087810878103115672610285
3570
Brugia pahangi strain Scotland/Glasgow (PRJEB497)146741467413272140213513137
10560
Brugia timori strain Flores island/ Indonesia (PRJEB4663)16203162031278334203512748
5610
Bursaphelenchus okinawaensis strain SH1 (PRJEB40023)145441454413121142368012441
12620
Bursaphelenchus xylophilus ASM23113v1_submitted (PRJEA64437)177041770416650105410816542
7790
Bursaphelenchus xylophilus strain Ka4C1 (PRJEB40022)1586015860156192411815601
2780
Caenorhabditis angaria (PRJNA51225)2797027970211636807204519118
46250
Caenorhabditis becei strain QG2083 (PRJEB28243)2392623926216232303231519308
41020
Caenorhabditis bovis (PRJEB34497)130161301611918109859011328
10050
Caenorhabditis brenneri (PRJNA20035)3070530705276653040334524320
94990
Caenorhabditis briggsae (PRJNA10731)20821208212002379818319840
11270
Caenorhabditis elegans strain N2 (PRJNA13758)199851998518591139479717794
30290
Caenorhabditis inopinata (PRJDB5687)2144321443199551488162218333
56810
Caenorhabditis japonica (PRJNA12591)2993529935261273808445121676
96380
Caenorhabditis latens (PRJNA248912)248552485521824303126121563
15470
Caenorhabditis nigoni strain JU1422 (PRJNA384657)2916729167267492418151925230
52460
Caenorhabditis panamensis (PRJEB28259)2222622226203401886120719133
30770
Caenorhabditis sp. 21 LS-2015 (PRJEB12595)1636716367138892478219311696
26140
Caenorhabditis sp. 38 MB-2015 strain JU2809 (PRJEB11354)2219222192201692023346716702
60590
Caenorhabditis remanei C_remanei-15.0.1 (PRJNA53967)314383143830401103725530146
39300
Caenorhabditis remanei strain PX506 (PRJNA577507)261892618925099109017924920
15250
Caenorhabditis sinica (PRJNA194557)3469634696308363860339127445
77270
Caenorhabditis sp. 32 LS-2015 strain JU2788 (PRJEB12601)1817718177167021475111215590
18530
Caenorhabditis sp. 40 LS-2015 strain JU2818 (PRJEB12608)2471424714233441370194221402
41970
Caenorhabditis tropicalis (PRJNA53597)2232622326194692857162917840
28660
Caenorhabditis sp. 31 LS-2015 strain JU2585 (PRJEB12600)2756827568239673601777216195
97340
Caenorhabditis sp. 39 LS-2015 strain NIC564 (PRJEB12602)3004830048275452503270324842
85440
Caenorhabditis sp. 26 LS-2015 strain JU2190 (PRJEB12596)221532215320981117261920362
22210
Cercopithifilaria johnstoni (PRJEB47283)10438104389729709609669
2970
Cylicostephanus goldi strain England/Cheshire (PRJEB498)139061390611248265817011078
7320
Dictyocaulus viviparus (PRJNA72587)135141351412145136913312012
5630
Diploscapter coronatus strain PDL0010 (PRJDB3143)3406334063315752488261028965
94780
Diploscapter pachys strain PF1309 (PRJNA280107)273412734122922441971722205
21680
Dirofilaria immitis (PRJEB1797)12558125581088916699010799
6270
Ditylenchus destructor strain Dd01 (PRJNA312427)139311393111276265593310343
16330
Ditylenchus dipsaci strain pooled J2 (PRJNA498219)2642826428199726456517214800
65560
Dracunculus medinensis (PRJEB500)1096910969964713226169031
8510
Elaeophora elaphi (PRJEB502)104101041010108302310105
1000
Enterobius vermicularis strain Spain/Canary Islands (PRJEB503)128951289510427246832010107
6390
Globodera pallida strain Lindley (PRJEB123)1640316403146131790100913604
37380
Globodera rostochiensis strain Ro1 (PRJEB13504)143081430813054125425812796
12000
Gongylonema pulchrum strain Japan/Hokkaido (PRJEB505)2715827158210086150225918749
50690
Haemonchus contortus (PRJEB506)196211962118270135174417526
33800
Haemonchus placei strain MHpl1 (PRJEB509)219282192817633429530017333
13690
Halicephalobus sp. WB-2010a (PRJNA528747)125461254610717182929410423
13650
Halicephalobus sp. NKZ332 (PRJNA555616)10997109971064535217110474
10970
Heligmosomoides polygyrus (PRJEB15396)2347123471176805791189715783
32650
Heterodera glycines strain TN10 (PRJNA381081)2245222452199632489145418509
58590
Heterodera schachtii strain Bonn (PRJNA722882)2672226722242222500227421948
80960
Heterorhabditis bacteriophora strain M31e (PRJNA13977)2096420964132247740288210342
26750
Litomosoides sigmodontis strain Bain lab strain (PRJEB3075)10246102469503743179486
2520
Loa loa strain CAT (PRJNA246086)12473124731155691754311013
17010
Meloidogyne arenaria strain A2-O Okinawa_01 (PRJNA438575)7670076700750931607379071303
282020
Meloidogyne enterolobii strain L30 (PRJNA340324)294732947327983149062027363
66310
Meloidogyne floridensis strain SJF1 (PRJNA340324)1276212762124882742612462
4130
Meloidogyne graminicola (PRJNA411966)108951089599179782989619
7080
Meloidogyne hapla strain VW9 (PRJNA29083)144191441913084133547912605
14470
Meloidogyne incognita (PRJEB8714)4371843718414342284125840176
68090
Meloidogyne javanica strain VW4 (PRJNA340324)24679246792392075913723783
17390
Mesorhabditis belari (PRJEB30104)2758827588216535935717514478
87510
Micoletzkya japonica (PRJEB27334)1985519855160623793250213560
31990
Necator americanus strain N. amaericanus Hunan isolate (PRJNA72135)157281572813880184824313637
9560
Nippostrongylus brasiliensis (PRJEB511)2279622796196903106120718483
40420
Oesophagostomum dentatum strain OD-Hann (PRJNA72579)2529125291229722319104421928
57890
Onchocerca flexuosa strain Red Deer (PRJNA230512)814081407172968187154
1290
Onchocerca ochengi strain Ngaoundere (PRJEB1204)12816128161186595110111764
4700
Onchocerca volvulus strain O. volvulus Cameroon isolate (PRJEB513)12109121091051215976110451
3200
Oscheius tipulae Oscheius_tipulae_assembly_v2 (PRJEB15512)1462614626139666606913897
2570
Oscheius tipulae strain CEW1 (PRJNA644888)16356163561559775917815419
10490
Panagrellus redivivus (PRJNA186477)2424924249185825667525813324
62640
Panagrolaimus davidi (PRJEB32708)257922579224300149289823402
73390
Panagrolaimus sp. ES5 (PRJEB32708)243032430322048225598021068
36800
Panagrolaimus sp. PS1159 (PRJEB32708)243802438022706167437622330
23450
Panagrolaimus superbus (PRJEB32708)196121961217676193637017306
21670
Parapristionchus giblindavisi (PRJEB27334)2287222872195073365267516832
46400
Parascaris equorum (PRJEB514)144721447291615311229139
2170
Parascaris univalens strain PG01 (PRJNA386823)143231432312489183415612333
6090
Parastrongyloides trichosuri strain KNP (PRJEB515)150101501013225178597212253
17810
Plectus sambesii strain ES601 (PRJNA390260)3906739067324796588890923570
164270
Pristionchus arcanus (PRJEB27334)3933139331356373694148034157
65140
Pristionchus entomophagus (PRJEB27334)3115031150263024848203424268
53890
Pristionchus exspectatus (PRJEB24288)3559535595327582837123431524
60760
Pristionchus fissidentatus (PRJEB27334)2828328283231505133334219808
51850
Pristionchus japonicus (PRJEB27334)3429334293281186175233725781
57410
Pristionchus maxplancki (PRJEB27334)3739337393333544039224831106
77350
Pristionchus mayeri (PRJEB27334)3271932719274405279299724443
63550
Pristionchus pacificus strain PS312 (PRJNA12644)263422634222772357073222040
30060
Panagrolaimus sp. JU765 (PRJEB32708)2041520415180052410327514730
51760
Rhabditophanes sp. KR3021 strain kr 3021 (PRJEB1297)1349613496115531943151010043
24630
Romanomermis culicivorax (PRJEB1358)483764837625299230771506710232
130860
Setaria digitata strain RSCHEM2018 (PRJNA479729)10090100908910118068904
730
Soboliphyme baturini strain Alaska/Dall Island (PRJEB516)1319313193836948245687801
9250
Steinernema carpocapsae (PRJNA202318)3093130931218169115187919937
35090
Steinernema feltiae strain NW (PRJNA353610)3230132301298712430695522916
131940
Steinernema glaseri (PRJNA204943)34137341372321110926376819443
54070
Steinernema monticolum (PRJNA205067)3600536005262629743448521777
67120
Steinernema scapterisci (PRJNA204942)3137631376238777499233621541
49490
Strongyloides papillosus strain LIN (PRJEB525)184561845617356110072416632
30520
Strongyloides ratti (PRJEB125)12464124641209936527011829
6530
Strongyloides stercoralis strain PV0001 (PRJEB528)12926129261241351340012013
10340
Strongyloides venezuelensis (PRJEB530)169041690415622128264114981
20590
Strongylus vulgaris strain USA/Kentucky (PRJEB531)210712107117529354272616803
22930
Syphacia muris strain Spain/Valencia (PRJEB524)1111711117938217351429240
2590
Teladorsagia circumcincta (PRJNA72569)255722557223256231694222314
64140
Thelazia callipaeda strain Switzerland/Ticino (PRJEB1205)1091210912981710951919626
2560
Toxocara canis strain PN_DK_2014 (PRJNA248777)185961859615493310350214991
14140
Trichinella britovi strain ISS120 (PRJNA257433)16058160581521784133414883
20080
Trichinella murrelli strain ISS417 (PRJNA257433)14852148521412073213913981
11300
Trichinella nativa strain ISS10 (PRJNA257433)13545135451242211237612346
7920
Trichinella nelsoni strain ISS37 (PRJNA257433)132291322911696153323011466
8830
Trichinella papuae strain ISS1980 (PRJNA257433)118371183710426141127910147
9970
Trichinella patagoniensis strain ISS2496 (PRJNA257433)153191531914004131534613658
16640
Trichinella pseudospiralis strain ISS13 (PRJNA257433)126591265910522213716168906
21340
Trichinella sp. T6 strain ISS34 (PRJNA257433)15241152411437187028914082
17160
Trichinella sp. T8 strain ISS272 (PRJNA257433)1491914919141327879714035
9690
Trichinella sp. T9 strain ISS409 (PRJNA257433)13111131111237273916412208
9170
Trichinella spiralis strain ISS 195 (PRJNA12603)163801638013874250649413380
29200
Trichinella zimbabwensis strain ISS1029 (PRJNA257433)1476414764127422022126211480
26280
Trichuris muris (PRJEB126)1499514995132041791158311621
44830
Trichuris suis (PRJNA179528)98319831830815231058203
4860
Trichuris trichiura strain Republic of Ecuador (PRJEB535)9650965088238271978626
6900
Wuchereria bancrofti strain pt0022 (PRJNA275548)1106811068106174512210595
8350

Platyhelminthes

Species# Genes# Sequences# Genes in a tree# Orphaned genes# Genes in a single-species tree# Genes in a multi-species treeCoverage# species-specific duplications# Gene splits
Atriophallophorus winterbourni strain NZ2018 (PRJNA636673)11499114991097552413919584
38220
Clonorchis sinensis strain Cs-k2 (PRJNA386618)134891348911840164941911421
11020
Dibothriocephalus latus (PRJEB1206)199661996616119384765715462
21370
Echinococcus canadensis (PRJEB8992)1143211432108625709610766
7490
Echinococcus granulosus strain G1 (PRJEB121)10245102459967278249943
1670
Echinococcus granulosus strain G1 (PRJNA182977)11319113191021011099210118
2360
Echinococcus multilocularis strain Java (PRJEB122)1066310663103912729210299
5900
Echinococcus oligarthrus strain DaMi1 (PRJEB31222)57735773483793604837
100
Echinostoma caproni strain Egypt (PRJEB1207)1860718607155183089203913479
27290
Fasciola gigantica strain Uganda_cow_1 (PRJNA230515)12669126691169697312311573
5220
Fasciola hepatica Fasciola_10x_pilon (PRJEB25283)973297329046686359011
1790
Fasciola hepatica F_hepatica_1.0.allpaths.pg (PRJNA179522)1121711217108154021210803
3300
Fasciolopsis buski strain HT (PRJNA284521)1183711837113135242711286
4410
Gyrodactylus bullatarudis strain Rox2016 (PRJNA532341)10629106299062156711957867
15510
Gyrodactylus salaris strain Lier (PRJNA244375)1543615436902464125208504
9220
Hydatigera taeniaeformis strain Spain/Canary Islands (PRJEB534)116491164910256139322210034
5540
Hymenolepis diminuta strain laboratory inbred isolate (PRJEB30942)1516515165131851980318010005
32870
Hymenolepis microstoma (PRJEB124)101391013996764633829294
10660
Rodentolepis nana strain Japan (PRJEB508)137771377712185159280611379
16750
Macrostomum lignano strain DV1 (PRJNA371498)49013490134753714761450433033
342540
Mesocestoides corti strain Specht & Voge 1965 (PRJEB510)147041470411878282622909588
26930
Opisthorchis felineus strain AK-0245 (PRJNA413383)11427114271039410337110323
3390
Opisthorchis viverrini (PRJNA222628)163791637912372400781411558
17890
Paragonimus westermani (PRJNA454344)127831278311763102041711346
16540
Protopolystoma xenopodis (PRJEB1201)3790637906122582564827809478
26340
Schistocephalus solidus strain NST_G2 (PRJEB527)2022820228176432585243715206
51450
Schistosoma bovis (PRJNA451066)1157611576112882886611222
10940
Schistosoma curassoni strain Senegal/Dakar (PRJEB519)235462354620643290326020383
17500
Schistosoma haematobium (PRJNA78265)931293129147165469101
4280
Schistosoma japonicum strain HuSjv2 (PRJNA520774)100891008992338562888945
5930
Schistosoma mansoni (PRJEA36577)978397839398385939305
4320
Schistosoma margrebowiei strain Zambia (PRJEB522)2618926189239092280142822481
54440
Schistosoma mattheei strain Zambia/Denwood (PRJEB523)229972299720024297323419790
11070
Schistosoma rodhaini strain Republic of Burundi (PRJEB526)2408924089202853804182018465
35760
Schmidtea mediterranea (PRJNA379262)2209022090183463744555312793
80960
Spirometra erinaceieuropaei (PRJEB1202)3955739557327016856620126500
145790
Taenia asiatica strain TASYD01 (PRJNA299871)13322133221305726514612911
15700
Taenia multiceps strain Gns01 (PRJNA307624)128901289011795109593310862
31170
Taenia saginata strain TSAYD01 (PRJNA71493)1316113161129042579012814
14090
Taenia solium strain Mexico (PRJNA170813)12467124671131811498811230
5080
Trichobilharzia regenti (PRJEB4662)221852218516809537674516064
16660