WormBase ParaSite HomeVersion: WBPS19 (WS291)-  Archive: WBPS18

Comparative Genomics

For full details of The protein tree pipeline and the subsequent prediction of homologues, see the Ensembl Compara documentation.

This page provides a summary of the Ensembl phylogenetic analysis of protein families. The following views are available:

Gene tree coverage and Gene QC (per species)

Quick links: Platyhelminthes

Nematoda

Species# Genes# Sequences# Genes in a tree# Orphaned genes# Genes in a single-species tree# Genes in a multi-species treeCoverage# species-specific duplications# Gene splits
Acanthocheilonema viteae (PRJEB1697)10138101389693445729621
4010
Acrobeloides nanus (PRJEB26554)3298432984275225462693920583
125060
Allodiplogaster sudhausi strain HASH(0x2b14c20) (PRJEB48369)40391403913724931421229424955
210050
Ancylostoma caninum strain Baltimore (PRJNA72585)301983019827704249464727057
56150
Ancylostoma ceylanicum strain HASH(0x3172748) (PRJNA231479)3318433184254427742402821414
68080
Ancylostoma duodenale strain Baltimore (PRJNA72581)274852748524913257252724386
40560
Angiostrongylus cantonensis strain Guangzhou (PRJNA350391)1031410314100292856929337
14210
Angiostrongylus costaricensis strain Costa Rica (PRJEB494)134081340812365104333112034
8050
Angiostrongylus vasorum strain ZH-2019-22 (PRJNA663250)137031370312025167850611519
11000
Anisakis simplex (PRJEB496)2097120971172113760156315648
31680
Aphelenchoides besseyi strain APVT (PRJNA834627)1108111081101069756039503
12430
Aphelenchoides bicaudatus strain Fsh (PRJNA834627)1067510675962210533519271
8600
Aphelenchoides fujianensis strain Dali (PRJNA834627)174771747716553924157014983
72930
Ascaris lumbricoides strain Republic of Ecuador (PRJEB4950)236032360318075552836217713
15400
Ascaris suum strain AG01 (PRJNA62057)167781677813985279312913856
7160
Auanema sp. JU1783 strain HASH(0x208d358) (PRJEB51845)1104011040979812423499449
5050
Bradynema listronoti strain AAFC-BrLi-01_J3_LR_R9 (PRJNA842945)1782417824161281696374612382
76640
Brugia malayi strain FR3 (PRJNA10729)1087810878104793992210457
3560
Brugia pahangi strain Scotland/Glasgow (PRJEB497)146681466813254141413913115
11090
Brugia timori strain Flores island/ Indonesia (PRJEB4663)16203162031273734663312704
5930
Bunonema sp. RGD898 (PRJNA655932)19721197219855986637966059
39490
Bursaphelenchus okinawaensis strain SH1 (PRJEB40023)145441454413102144267012432
12540
Bursaphelenchus xylophilus ASM23113v1_submitted (PRJEA64437)17560175601652410369316431
7290
Bursaphelenchus xylophilus strain Ka4C1 (PRJEB40022)1586015860156142461815596
2870
Caenorhabditis angaria (PRJNA51225)2765927659208576802203218825
44950
Caenorhabditis auriculariae strain NKZ352 (PRJEB40642)1627916279132603019133411926
18180
Caenorhabditis becei strain QG2083 (PRJEB28243)2392623926216132313233019283
41100
Caenorhabditis bovis (PRJEB34497)130161301611930108658611344
10020
Caenorhabditis brenneri (PRJNA20035)3070430704276453059335224293
94720
Caenorhabditis briggsae (PRJNA10731)20821208212001580617819837
11190
Caenorhabditis elegans strain N2 (PRJNA13758)199841998418585139979417791
30150
Caenorhabditis inopinata (PRJDB5687)2144321443199551488165118304
55920
Caenorhabditis japonica (PRJNA12591)2993529935261163819454021576
95590
Caenorhabditis latens (PRJNA248912)248552485521822303326621556
15440
Caenorhabditis nigoni strain JU1422 (PRJNA384657)2916729167267452422152725218
52630
Caenorhabditis panamensis (PRJEB28259)2222522225203231902124019083
30840
Caenorhabditis parvicauda (PRJEB12595)1636716367139652402214011825
25870
Caenorhabditis quiockensis strain JU2809 (PRJEB11354)2219222192201602032345516705
60750
Caenorhabditis remanei C_remanei-15.0.1 (PRJNA53967)314383143830405103326430141
39790
Caenorhabditis remanei strain PX506 (PRJNA577507)261892618925088110117524913
15390
Caenorhabditis sinica (PRJNA194557)3404934049303033746331026993
75500
Caenorhabditis sulstoni strain JU2788 (PRJEB12601)1817718177167021475112615576
18430
Caenorhabditis tribulationis strain JU2818 (PRJEB12608)2471424714233341380196221372
42120
Caenorhabditis tropicalis (PRJNA53597)2209122091192572834159817659
27840
Caenorhabditis uteleia strain JU2585 (PRJEB12600)2756827568239553613777116184
97340
Caenorhabditis waitukubuli strain NIC564 (PRJEB12602)3004830048275292519270224827
84610
Caenorhabditis zanzibari strain JU2190 (PRJEB12596)221532215320975117858720388
22170
Cercopithifilaria johnstoni (PRJEB47283)10438104389729709659664
2880
Cylicocyclus nassatus strain Nouzilly (PRJEB63274)2271522715197682947192217846
47790
Cylicostephanus goldi strain England/Cheshire (PRJEB498)13905139051148824179011398
7220
Dictyocaulus viviparus (PRJNA72587)135141351412166134817211994
5130
Diplogasteroides magnus strain TMG144 (PRJNA655932)3225632256257976459658519212
95150
Diploscapter coronatus strain PDL0010 (PRJDB3143)3406334063315862477261128975
95090
Diploscapter pachys strain PF1309 (PRJNA280107)273412734122942439971422228
21950
Dirofilaria immitis (PRJEB1797)12558125581087816809410784
6250
Ditylenchus destructor strain Dd01 (PRJNA312427)139311393111306262592710379
16350
Ditylenchus dipsaci strain pooled J2 (PRJNA498219)2616626166197506416503014720
64010
Dracunculus medinensis (PRJEB500)1091910919963112886199012
8460
Elaeophora elaphi (PRJEB502)104091040910097312010097
1030
Enoplolaimus lenunculus strain HASH(0x26313f8) (PRJNA953805)1782017820144393381107413365
21430
Enterobius vermicularis strain Spain/Canary Islands (PRJEB503)128951289510423247232510098
6380
Epsilonema sp. ZAB3_2 strain HASH(0x3d292b8) (PRJNA953805)2050320503165833920361712966
47570
Globodera pallida strain Lindley (PRJEB123)163871638714915147231714598
21230
Globodera pallida strain D383 (PRJNA764088)1806418064161801884107615104
26460
Globodera rostochiensis strain Ro1 (PRJEB13504)13523135231254497917812366
9880
Gongylonema pulchrum strain Japan/Hokkaido (PRJEB505)2715827158210156143229118724
50110
Haemonchus contortus (PRJEB506)196211962118285133670617579
33560
Haemonchus placei strain MHpl1 (PRJEB509)219282192817608432031017298
13330
Halicephalobus mephisto strain m2B (PRJNA528747)125401254010707183328910418
13540
Halicephalobus sp. NKZ332 (PRJNA555616)10997109971064335416710476
10600
Heligmosomoides polygyrus (PRJEB15396)2346823468176875781198715700
32740
Heterodera glycines strain TN10 (PRJNA381081)2245222452199662486145518511
58580
Heterodera schachtii strain Bonn (PRJNA522950)2672226722242532469228321970
80280
Heterorhabditis bacteriophora strain M31e (PRJNA13977)2096420964132377727289510342
26420
Koerneria luziae strain NKZ323 (PRJNA655932)366363663625918107181094714971
123850
Levipalatum texanum strain TMG5 (PRJNA655932)3123131231239197312609417825
78450
Linhomoeus sp. GSCO2_2 strain HASH(0x3fdfb90) (PRJNA953805)2689426894220464848764414402
97880
Litomosoides sigmodontis strain Bain lab strain (PRJEB3075)10014100149307707199288
2400
Loa loa strain CAT (PRJNA246086)12473124731154492954211002
17180
Meloidogyne arenaria strain A2-O Okinawa_01 (PRJNA438575)7670076700751651535221272953
250150
Meloidogyne chitwoodi strain Race1 (PRJNA666745)11714117141005316615889465
14160
Meloidogyne floridensis strain SJF1 (PRJNA340324)1276212762124782843312445
4170
Meloidogyne graminicola (PRJNA411966)1089510895100078881979810
5740
Meloidogyne hapla strain VW9 (PRJNA29083)144191441913120129950712613
14390
Meloidogyne incognita (PRJEB8714)437184371841729198984240887
47870
Meloidogyne javanica strain VW4 (PRJNA340324)24679246792389778216323734
18720
Mesodorylaimus sp. YZB2_4 strain HASH(0x248fae0) (PRJNA953805)2252922529192603269538413876
80910
Mesorhabditis belari strain JU2817 (PRJEB61636)2191121911195842327293016654
67250
Mesorhabditis spiculigera strain AF72 (PRJEB59059)2595425954232782676432218956
93870
Micoletzkya japonica (PRJEB27334)1985519855161363719235613780
30140
Microlaimidae sp. YZB2_3 strain HASH(0x2417920) (PRJNA953805)2346223462144489014283711611
30310
Necator americanus strain HASH(0x2e55d98) (PRJNA1007425)2659226592227283864483217896
86400
Nippostrongylus brasiliensis strain HASH(0x26b8b58) (PRJNA994163)164611646114623183893413689
20270
Oesophagostomum dentatum strain OD-Hann (PRJNA72579)2529125291229702321102821942
58080
Onchocerca flexuosa strain Red Deer (PRJNA230512)814081407173967187155
1340
Onchocerca ochengi strain Ngaoundere (PRJEB1204)1281412814118559598611769
4510
Onchocerca volvulus strain O. volvulus Cameroon isolate (PRJEB513)12109121091051015996310447
3280
Oscheius tipulae Oscheius_tipulae_assembly_v2 (PRJEB15512)1462614626139706565613914
2430
Oscheius tipulae strain CEW1 (PRJNA644888)16356163561560475218215422
10430
Panagrellus redivivus (PRJNA186477)2424924249185675682520313364
62270
Panagrolaimus davidi (PRJEB32708)257922579224300149288423416
73280
Panagrolaimus sp. PS1159 (PRJEB32708)243802438022721165936822353
23480
Panagrolaimus sp. ES5 (PRJEB32708)2430324303220392264100421035
36620
Panagrolaimus sp. JU765 (PRJEB32708)2041520415180112404328314728
51670
Panagrolaimus superbus (PRJEB32708)196121961217667194536417303
21500
Paralinhomoeus sp. GSCO2_6 strain HASH(0x27cc970) (PRJNA953805)2364423644198013843566514136
83040
Parapristionchus giblindavisi (PRJEB53331)2248822488195202968298316537
47250
Parascaris equorum (PRJEB514)144691446991745295209154
2250
Parascaris univalens strain PG01 (PRJNA386823)143231432312489183416012329
6270
Parastrongyloides trichosuri strain KNP (PRJEB515)149241492413144178097612168
17680
Parelaphostrongylus tenuis strain MNPRO001-30 (PRJNA729714)2868828688200878601469415393
66470
Plectus sambesii strain ES601 (PRJNA390260)3906439064328616203796324898
162280
Pristionchus arcanus (PRJEB27334)3933139331356163715150734109
65190
Pristionchus entomophagus (PRJEB27334)3115031150263024848198424318
53390
Pristionchus exspectatus (PRJEB46690)310213102128183283886927314
27650
Pristionchus fissidentatus (PRJEB27334)2828328283231715112330219869
51220
Pristionchus japonicus (PRJEB27334)3429334293281086185233025778
56400
Pristionchus maxplancki (PRJEB27334)3739337393333604033225631104
77820
Pristionchus mayeri (PRJEB27334)3271932719274125307303124381
63290
Pristionchus pacificus strain PS312 (PRJNA12644)263422634222788355466322125
29910
Ptycholaimellus sp. GST1_10 strain HASH(0x3758970) (PRJNA953805)2783827838220455793938512660
99880
Rhabditophanes sp. KR3021 strain kr 3021 (PRJEB1297)133891338911449194014939956
24020
Rhynchonema sp. JSB1_4 strain HASH(0x2bf7b90) (PRJNA953805)2400924009199824027515614826
68390
Romanomermis culicivorax (PRJEB1358)483764837625603227731471210891
126290
Sabatieria punctata strain HASH(0x2d80ae0) (PRJNA953805)2928529285252734012750617767
113230
Setaria digitata strain RSCHEM2018 (PRJNA479729)10090100908913117768907
730
Soboliphyme baturini strain Alaska/Dall Island (PRJEB516)1318813188848247065607922
8340
Steinernema carpocapsae (PRJNA202318)3093130931218179114182019997
34970
Steinernema feltiae strain NW (PRJNA353610)3230132301298912410693822953
132140
Steinernema glaseri (PRJNA204943)34137341372354710590285020697
51150
Steinernema hermaphroditum strain PS9179 (PRJNA982879)194431944317625181899916626
30340
Steinernema monticolum (PRJNA205067)3600536005263289677444621882
66230
Steinernema scapterisci (PRJNA204942)3137631376238837493235321530
49340
Strongyloides papillosus strain LIN (PRJEB525)183201832017208111271816490
29650
Strongyloides ratti (PRJEB125)12464124641206240225611806
6890
Strongyloides stercoralis strain PV001 (PRJNA930454)101521015299522003429610
6920
Strongyloides venezuelensis (PRJEB530)166411664115372126965314719
19500
Strongylus vulgaris strain USA/Kentucky (PRJEB531)210712107117553351873016823
22710
Syphacia muris strain Spain/Valencia (PRJEB524)1111711117937517421419234
2580
Teladorsagia circumcincta (PRJNA72569)255702557023248232292622322
63250
Thelazia callipaeda strain Switzerland/Ticino (PRJEB1205)1091210912982210901909632
2550
Theristus sp. LFF4_11 strain HASH(0x3bf0af0) (PRJNA953805)1813518135149413194176713174
29990
Toxocara canis strain PN_DK_2014 (PRJNA248777)185961859615497309951014987
13920
Trichinella britovi strain ISS120 (PRJNA257433)16058160581521884032214896
19890
Trichinella murrelli strain ISS417 (PRJNA257433)14852148521410774514813959
11250
Trichinella nativa strain ISS10 (PRJNA257433)13545135451242111247912342
7750
Trichinella nelsoni strain ISS37 (PRJNA257433)132291322911681154822211459
8870
Trichinella papuae strain ISS1980 (PRJNA257433)118371183710431140628510146
10110
Trichinella patagoniensis strain ISS2496 (PRJNA257433)153191531913986133335313633
16440
Trichinella pseudospiralis strain ISS13 (PRJNA257433)126591265910501215816058896
21080
Trichinella sp. T6 strain ISS34 (PRJNA257433)15241152411436387825414109
17060
Trichinella sp. T8 strain ISS272 (PRJNA257433)1491914919141317889914032
9490
Trichinella sp. T9 strain ISS409 (PRJNA257433)13111131111236175015612205
9150
Trichinella spiralis strain ISS 195 (PRJNA12603)163801638013865251550413361
28910
Trichinella zimbabwensis strain ISS1029 (PRJNA257433)1476414764127262038129711429
26240
Trichuris muris (PRJEB126)1499514995132791716156711712
43600
Trichuris suis (PRJNA179528)9831983183871444828305
4560
Trichuris trichiura strain Republic of Ecuador (PRJEB535)12638126381182181799710824
30140
Trileptium ribeirensis strain HASH(0x26e2a80) (PRJNA953805)2387923879174256454369613729
48420
Trissonchulus latispiculum strain HASH(0x3ac59f0) (PRJNA953805)33259332592744458151001517429
128510
Trissonchulus sp. WLG1_4 strain HASH(0x3ccc910) (PRJNA953805)2297822978186164362373414882
54740
Wuchereria bancrofti strain 17-3 (PRJNA275548)1116611166106365302310613
5700

Platyhelminthes

Species# Genes# Sequences# Genes in a tree# Orphaned genes# Genes in a single-species tree# Genes in a multi-species treeCoverage# species-specific duplications# Gene splits
Atriophallophorus winterbourni strain NZ2018 (PRJNA636673)11499114991099850113089690
38620
Clonorchis sinensis strain Cs-k2 (PRJNA386618)134891348911841164842511416
10970
Dibothriocephalus latus (PRJEB1206)199661996616052391465315399
21140
Dicrocoelium dendriticum strain tdDicDend1.1 (PRJEB44434)136831368311165251813829783
30400
Echinococcus canadensis (PRJEB8992)1142511425949619293989098
7270
Echinococcus granulosus strain G1 (PRJEB121)10236102369984252399945
1370
Echinococcus granulosus strain EgG1s_protoscolex (PRJNA754835)998599859656329859571
5960
Echinococcus multilocularis strain Java (PRJEB122)1066310663103902739510295
5800
Echinococcus oligarthrus strain DaMi1 (PRJEB31222)57735773484592804845
80
Echinostoma caproni strain Egypt (PRJEB1207)1860718607153983209168013718
27520
Fasciola gigantica strain Uganda_cow_1 (PRJNA230515)1266912669117189517011648
4950
Fasciola hepatica strain S (PRJEB58756)1686516865129023963142911473
19930
Fasciola hepatica F_hepatica_1.0.allpaths.pg (PRJNA179522)112171121710879338910870
3090
Fasciolopsis buski strain HT (PRJNA284521)1183711837112845532611258
4060
Gyrodactylus bullatarudis strain Rox2016 (PRJNA532341)10628106289050157811727878
15280
Gyrodactylus salaris strain Lier (PRJNA244375)1541415414901563995158500
9130
Heterobilharzia americana strain tdHetHame1.1 (PRJEB44434)121191211910710140911310597
8720
Hydatigera taeniaeformis strain Spain/Canary Islands (PRJEB534)116491164910237141222310014
5350
Hymenolepis diminuta strain laboratory inbred isolate (PRJEB30942)1516515165131681997316210006
32870
Hymenolepis microstoma (PRJEB124)101391013996764633739303
10780
Rodentolepis nana strain Japan (PRJEB508)137771377712174160380411370
16880
Macrostomum lignano strain DV1 (PRJNA371498)49013490134754214711431633226
342030
Mesocestoides corti strain Specht & Voge 1965 (PRJEB510)147041470411864284023239541
26880
Opisthorchis felineus strain AK-0245 (PRJNA413383)11427114271039710306310334
3240
Opisthorchis viverrini (PRJNA222628)163791637912365401481011555
18000
Paragonimus heterotremus strain HASH(0x251c900) (PRJNA284523)1248712487116308574511585
4310
Paragonimus kellicotti strain Missouri (PRJNA179523)128501285011133171710411029
5940
Paragonimus skrjabini miyazakii strain HASH(0x3fae100) (PRJNA245325)126501265011408124219511213
6210
Paragonimus westermani (PRJNA454344)12783127831219858516212036
13520
Protopolystoma xenopodis (PRJEB1201)3790637906119932591327859208
26780
Schistocephalus solidus strain NST_G2 (PRJEB527)2022820228175982630228315315
50680
Schistosoma bovis strain tdSchBovi1.1 (PRJEB44434)952795279291236259266
2430
Schistosoma curassoni strain tdSchCurr1.1 (PRJEB44434)1008410084977730799768
4830
Schistosoma guineensis strain tdSchGuin1.1 (PRJEB44434)97059705947223369466
3740
Schistosoma haematobium (PRJNA78265)943194319278153199259
4630
Schistosoma intercalatum strain tdSchInte1.1 (PRJEB44434)967696769394282169378
2550
Schistosoma japonicum strain F4M4 (PRJNA724792)975997599255504429213
5590
Schistosoma mansoni (PRJEA36577)989698969479417679412
4410
Schistosoma margrebowiei strain tdSchMarg1.1 (PRJEB44434)978097809467313259442
4620
Schistosoma mattheei strain tdSchMatt1.1 (PRJEB44434)1077010770103534172510328
5890
Schistosoma rodhaini strain tdSchRodh1.1 (PRJEB44434)992799279515412339482
6110
Schistosoma spindale strain tdSchSpin1.1 (PRJEB44434)933093309085245149071
4070
Schistosoma turkestanicum strain tdSchTurk1.1 (PRJEB44434)11134111341040173329710104
12520
Schmidtea mediterranea strain S2F19 (PRJNA885486)1729417294143092985265111658
50100
Spirometra erinaceieuropaei (PRJEB1202)3955739557325876970630126286
146300
Taenia asiatica strain TASYD01 (PRJNA299871)13322133221305626613812918
15820
Taenia multiceps strain Gns01 (PRJNA307624)12502125021169680687710819
30360
Taenia saginata strain TSAYD01 (PRJNA71493)1316013160129002608612814
13750
Taenia solium strain Mexico (PRJNA170813)12356123561119811588811110
4640
Trichobilharzia regenti strain tdTriRege1.1 (PRJEB44434)14478144781359588366612929
31310
Trichobilharzia szidati strain tdTriSzid1.1 (PRJEB44434)14843148431424959424014009
39720