WormBase ParaSite HomeVersion: WBPS16 (WS279)

Comparative Genomics

For full details of The protein tree pipeline and the subsequent prediction of homologues, see the Ensembl Compara documentation.

This page provides a summary of the Ensembl phylogenetic analysis of protein families. The following views are available:

Gene tree coverage and Gene QC (per species)

Quick links: Platyhelminthes

Nematoda

Species# Genes# Sequences# Genes in a tree# Orphaned genes# Genes in a single-species tree# Genes in a multi-species treeCoverage# species-specific duplications# Gene splits
Acanthocheilonema viteae (PRJEB1697)10397103979919478849835
4050
Acrobeloides nanus (PRJEB26554)3298432984275315453695420577
125990
Ancylostoma caninum strain Baltimore (PRJNA72585)301983019827784241462627158
54650
Ancylostoma ceylanicum strain HY135 (PRJNA231479)3668736687275609127447323087
72910
Ancylostoma duodenale strain Baltimore (PRJNA72581)274852748524974251155724417
39710
Angiostrongylus cantonensis strain Guangzhou (PRJNA350391)1031410314100672477019366
14960
Angiostrongylus costaricensis strain Costa Rica (PRJEB494)134171341711937148051011427
9310
Anisakis simplex (PRJEB496)2097120971172033768154115662
31250
Ascaris lumbricoides strain Republic of Ecuador (PRJEB4950)236042360418059554536917690
15130
Ascaris suum strain AG01 (PRJNA62057)167781677813997278112913868
6650
Brugia malayi strain FR3 (PRJNA10729)1087810878103125662410288
3740
Brugia pahangi strain Scotland/Glasgow (PRJEB497)146741467413270140414013130
10510
Brugia timori strain Flores island/ Indonesia (PRJEB4663)16203162031277634273512741
5320
Bursaphelenchus okinawaensis strain SH1 (PRJEB40023)145441454413122142267512447
12410
Bursaphelenchus xylophilus ASM23113v1_submitted (PRJEA64437)177041770416660104410416556
7740
Bursaphelenchus xylophilus strain Ka4C1 (PRJEB40022)1586015860156212392015601
2930
Caenorhabditis angaria (PRJNA51225)2797027970211746796203819136
44700
Caenorhabditis becei strain QG2083 (PRJEB28243)2392623926216272299233819289
40780
Caenorhabditis bovis (PRJEB34497)130161301611924109259411330
9940
Caenorhabditis brenneri (PRJNA20035)3070530705276723033335224320
94560
Caenorhabditis briggsae (PRJNA10731)20821208212001580618019835
11200
Caenorhabditis elegans strain N2 (PRJNA13758)199971999718591140677917812
30190
Caenorhabditis inopinata (PRJDB5687)2144321443199671476161018357
56160
Caenorhabditis japonica (PRJNA12591)2993529935261483787457421574
95100
Caenorhabditis latens (PRJNA248912)248552485521835302026621569
15320
Caenorhabditis nigoni strain JU1422 (PRJNA384657)2916729167267462421151525231
52070
Caenorhabditis panamensis (PRJEB28259)2222622226203441882121819126
30780
Caenorhabditis sp. 21 LS-2015 (PRJEB12595)1636716367139022465219611706
26280
Caenorhabditis sp. 38 MB-2015 strain JU2809 (PRJEB11354)2219222192201712021346816703
60330
Caenorhabditis remanei C_remanei-15.0.1 (PRJNA53967)314383143830403103525930144
39070
Caenorhabditis remanei strain PX506 (PRJNA577507)261892618925098109117324925
15460
Caenorhabditis sinica (PRJNA194557)3469634696308333863339827435
76640
Caenorhabditis sp. 32 LS-2015 strain JU2788 (PRJEB12601)1817718177167121465114215570
18660
Caenorhabditis sp. 40 LS-2015 strain JU2818 (PRJEB12608)2471424714233371377194521392
42030
Caenorhabditis tropicalis (PRJNA53597)2232622326194792847162417855
28520
Caenorhabditis sp. 31 LS-2015 strain JU2585 (PRJEB12600)2756827568239773591779216185
97260
Caenorhabditis sp. 39 LS-2015 strain NIC564 (PRJEB12602)3004830048275692479270124868
84200
Caenorhabditis sp. 26 LS-2015 strain JU2190 (PRJEB12596)221532215320988116559120397
22060
Cylicostephanus goldi strain England/Cheshire (PRJEB498)139061390611281262517411107
7140
Dictyocaulus viviparus (PRJNA72587)135141351412133138114011993
5570
Diploscapter coronatus strain PDL0010 (PRJDB3143)3406334063315862477259728989
96190
Diploscapter pachys strain PF1309 (PRJNA280107)273412734122938440368422254
22880
Dirofilaria immitis (PRJEB1797)12558125581088016789010790
6090
Ditylenchus destructor strain Dd01 (PRJNA312427)139311393111279265294110338
16260
Ditylenchus dipsaci strain pooled J2 (PRJNA498219)2642826428199846444517314811
65040
Dracunculus medinensis (PRJEB500)1096910969964313266049039
8390
Elaeophora elaphi (PRJEB502)104101041010100310310097
960
Enterobius vermicularis strain Spain/Canary Islands (PRJEB503)128951289510429246633010099
6410
Globodera pallida strain Lindley (PRJEB123)1640316403145961807101513581
37340
Globodera rostochiensis strain Ro1 (PRJEB13504)143081430813019128926312756
11660
Gongylonema pulchrum strain Japan/Hokkaido (PRJEB505)2715827158209896169230618683
49610
Haemonchus contortus (PRJEB506)196211962118263135873917524
33610
Haemonchus placei strain MHpl1 (PRJEB509)219282192817641428729417347
13130
Halicephalobus sp. WB-2010a (PRJNA528747)12546125461054420026509894
16740
Heligmosomoides polygyrus (PRJEB15396)2347123471176745797193115743
32570
Heterodera glycines strain TN10 (PRJNA381081)2967929679259733706723418739
132760
Heterorhabditis bacteriophora strain M31e (PRJNA13977)2096420964132217743284510376
26670
Litomosoides sigmodontis strain Bain lab strain (PRJEB3075)10246102469502744179485
2380
Loa loa strain CAT (PRJNA246086)12473124731155791650511052
17410
Meloidogyne arenaria strain A2-O Okinawa_01 (PRJNA438575)7670076700751001600380571295
281820
Meloidogyne enterolobii strain L30 (PRJNA340324)294732947327986148763927347
65390
Meloidogyne floridensis strain SJF1 (PRJNA340324)1276212762124862762212464
4160
Meloidogyne graminicola (PRJNA411966)108951089599149812939621
6870
Meloidogyne hapla strain VW9 (PRJNA29083)144191441913079134049312586
14540
Meloidogyne incognita (PRJEB8714)4371843718414522266127840174
69360
Meloidogyne javanica strain VW4 (PRJNA340324)24679246792392375613723786
18480
Mesorhabditis belari (PRJEB30104)2758827588216645924718514479
86950
Micoletzkya japonica strain HASH(0x27ecc00) (PRJEB27334)1985519855160673788251013557
31690
Necator americanus strain N. amaericanus Hunan isolate (PRJNA72135)191531915316073308054515528
13000
Nippostrongylus brasiliensis (PRJEB511)2279622796196913105120418487
39560
Oesophagostomum dentatum strain OD-Hann (PRJNA72579)2529125291229622329103521927
56850
Onchocerca flexuosa strain Red Deer (PRJNA230512)814081407171969207151
1280
Onchocerca ochengi strain Ngaoundere (PRJEB1204)12816128161186695010111765
4310
Onchocerca volvulus strain O. volvulus Cameroon isolate (PRJEB513)12109121091051015996210448
3220
Oscheius tipulae Oscheius_tipulae_assembly_v2 (PRJEB15512)1462614626139716556913902
2660
Oscheius tipulae strain CEW1 (PRJNA644888)16356163561560175516015441
10550
Panagrellus redivivus (PRJNA186477)2424924249185765673524613330
62440
Panagrolaimus davidi (PRJEB32708)257922579224312148087023442
73160
Panagrolaimus sp. ES5 (PRJEB32708)243032430322040226398521055
36460
Panagrolaimus sp. PS1159 (PRJEB32708)243802438022710167037122339
23160
Panagrolaimus superbus (PRJEB32708)196121961217674193837317301
21240
Parapristionchus giblindavisi strain HASH(0x36d2ed0) (PRJEB27334)2287222872195013371265816843
46100
Parascaris equorum (PRJEB514)144721447291795293229157
2090
Parascaris univalens strain PG01 (PRJNA386823)143231432312489183415812331
5990
Parastrongyloides trichosuri strain KNP (PRJEB515)150101501013228178295812270
17890
Plectus sambesii strain ES601 (PRJNA390260)3906739067324786589893823540
163430
Pristionchus arcanus (PRJEB27334)3933139331356273704148234145
64360
Pristionchus entomophagus strain HASH(0x4011f20) (PRJEB27334)3115031150263114839203624275
53830
Pristionchus exspectatus (PRJEB24288)3559535595327592836123331526
59770
Pristionchus fissidentatus strain HASH(0x37fa080) (PRJEB27334)2828328283231515132333419817
51460
Pristionchus japonicus strain HASH(0x3307d00) (PRJEB27334)3429334293281206173237025750
56550
Pristionchus maxplancki strain HASH(0x318cb90) (PRJEB27334)3739337393333804013225431126
77220
Pristionchus mayeri strain HASH(0x3e67ab0) (PRJEB27334)3271932719274565263297724479
63580
Pristionchus pacificus strain PS312 (PRJNA12644)263422634222778356471722061
29630
Panagrolaimus sp. JU765 (PRJEB32708)2041520415179472468333014617
51460
Rhabditophanes sp. KR3021 strain kr 3021 (PRJEB1297)1349613496115521944151510037
24340
Romanomermis culicivorax (PRJEB1358)483764837625278230981505510223
130170
Setaria digitata strain RSCHEM2018 (PRJNA479729)10090100908900119068894
580
Soboliphyme baturini strain Alaska/Dall Island (PRJEB516)1319313193837148225617810
8830
Steinernema carpocapsae (PRJNA202318)3093130931218239108187819945
34970
Steinernema feltiae strain NW (PRJNA353610)3230132301298742427698422890
131810
Steinernema glaseri (PRJNA204943)34137341372320010937375919441
53500
Steinernema monticolum (PRJNA205067)3600536005262809725448021800
66540
Steinernema scapterisci (PRJNA204942)3137631376238857491234521540
49250
Strongyloides papillosus strain LIN (PRJEB525)184561845617359109771916640
30070
Strongyloides ratti (PRJEB125)12464124641210436027111833
6650
Strongyloides stercoralis strain PV0001 (PRJEB528)12926129261241351340212011
10170
Strongyloides venezuelensis (PRJEB530)169041690415631127365914972
20860
Strongylus vulgaris strain USA/Kentucky (PRJEB531)210712107117572349974116831
22370
Syphacia muris strain Spain/Valencia (PRJEB524)1111711117938317341419242
2550
Teladorsagia circumcincta (PRJNA72569)255722557223270230291822352
62220
Thelazia callipaeda strain Switzerland/Ticino (PRJEB1205)1091210912982210901779645
2560
Toxocara canis strain PN_DK_2014 (PRJNA248777)185961859615493310350514988
13680
Trichinella britovi strain ISS120 (PRJNA257433)16058160581523282632114911
20060
Trichinella murrelli strain ISS417 (PRJNA257433)14852148521411274014513967
11240
Trichinella nativa strain ISS10 (PRJNA257433)13545135451242111248012341
7890
Trichinella nelsoni strain ISS37 (PRJNA257433)132291322911694153522811466
8970
Trichinella papuae strain ISS1980 (PRJNA257433)118371183710434140327810156
10140
Trichinella patagoniensis strain ISS2496 (PRJNA257433)153191531914006131334313663
16460
Trichinella pseudospiralis strain ISS13 (PRJNA257433)126591265910536212316108926
21340
Trichinella sp. T6 strain ISS34 (PRJNA257433)15241152411436487724914115
17380
Trichinella sp. T8 strain ISS272 (PRJNA257433)14919149191412879110014028
9580
Trichinella sp. T9 strain ISS409 (PRJNA257433)13111131111237373815712216
9140
Trichinella spiralis strain ISS 195 (PRJNA12603)163801638013875250550013375
28870
Trichinella zimbabwensis strain ISS1029 (PRJNA257433)1476414764127452019129511450
26290
Trichuris muris (PRJEB126)1499514995132011794164111560
44980
Trichuris suis (PRJNA179528)9831983183081523968212
4700
Trichuris trichiura strain Republic of Ecuador (PRJEB535)9650965088258252038622
6810
Wuchereria bancrofti strain pt0022 (PRJNA275548)1106811068106144542210592
8260

Platyhelminthes

Species# Genes# Sequences# Genes in a tree# Orphaned genes# Genes in a single-species tree# Genes in a multi-species treeCoverage# species-specific duplications# Gene splits
Atriophallophorus winterbourni strain NZ2018 (PRJNA636673)11499114991098451513269658
38230
Clonorchis sinensis strain Cs-k2 (PRJNA386618)134891348911851163840211449
11030
Dibothriocephalus latus (PRJEB1206)199661996616119384764615473
21040
Echinococcus canadensis (PRJEB8992)11432114321084858410810740
7390
Echinococcus granulosus strain G1 (PRJEB121)10245102459970275249946
1550
Echinococcus granulosus strain G1 (PRJNA182977)11319113191019911209210107
2330
Echinococcus multilocularis strain Java (PRJEB122)1066310663103872769210295
5880
Echinococcus oligarthrus strain DaMi1 (PRJEB31222)57735773484492904844
90
Echinostoma caproni strain Egypt (PRJEB1207)1860718607155193088196513554
25560
Fasciola gigantica strain Uganda_cow_1 (PRJNA230515)126691266911498117113511363
4610
Fasciola hepatica Fasciola_10x_pilon (PRJEB25283)973297329014718408974
1750
Fasciola hepatica F_hepatica_1.0.allpaths.pg (PRJNA179522)15739157391361021298113529
7940
Gyrodactylus salaris strain Lier (PRJNA244375)1543615436764177957476894
8180
Hydatigera taeniaeformis strain Spain/Canary Islands (PRJEB534)116491164910260138921710043
4990
Hymenolepis diminuta strain laboratory inbred isolate (PRJEB30942)1516515165131771988316410013
32620
Hymenolepis microstoma (PRJEB124)101391013996784613869292
10510
Rodentolepis nana strain Japan (PRJEB508)137771377712187159080111386
16100
Macrostomum lignano strain DV1 (PRJNA371498)49013490134753714761452433013
341230
Mesocestoides corti strain Specht & Voge 1965 (PRJEB510)147041470411878282622829596
26480
Opisthorchis felineus strain AK-0245 (PRJNA413383)11427114271039410336710327
3210
Opisthorchis viverrini (PRJNA222628)163791637912380399976111619
18070
Paragonimus westermani (PRJNA454344)12783127831178799639011397
16040
Protopolystoma xenopodis (PRJEB1201)3790637906123132559327759538
26110
Schistocephalus solidus strain NST_G2 (PRJEB527)2022820228176352593241515220
50890
Schistosoma bovis (PRJNA451066)1157611576112872896611221
9980
Schistosoma curassoni strain Senegal/Dakar (PRJEB519)235462354620667287924720420
17000
Schistosoma haematobium (PRJNA78265)931293129155157469109
4210
Schistosoma japonicum strain HuSjv2 (PRJNA520774)100891008992348552888946
5860
Schistosoma mansoni (PRJEA36577)101441014497473971189629
6570
Schistosoma margrebowiei strain Zambia (PRJEB522)2618926189239232266145222471
54480
Schistosoma mattheei strain Zambia/Denwood (PRJEB523)229972299720057294022519832
11040
Schistosoma rodhaini strain Republic of Burundi (PRJEB526)2408924089203323757177818554
34710
Schmidtea mediterranea (PRJNA379262)2209022090183503740556912781
81110
Spirometra erinaceieuropaei (PRJEB1202)3955739557327506807614826602
144820
Taenia asiatica strain TASYD01 (PRJNA299871)13322133221306026214212918
15580
Taenia multiceps strain Gns01 (PRJNA307624)128901289011790110093010860
30590
Taenia saginata strain TSAYD01 (PRJNA71493)1316113161129042579012814
13930
Taenia solium strain Mexico (PRJNA170813)12467124671131211558711225
4650
Trichobilharzia regenti (PRJEB4662)221852218516905528076016145
15740