WormBase ParaSite HomeVersion: WBPS15 (WS276)

Comparative Genomics

For full details of The protein tree pipeline and the subsequent prediction of homologues, see the Ensembl Compara documentation.

This page provides a summary of the Ensembl phylogenetic analysis of protein families. The following views are available:

Overall Summary

Legend
Internal nodes (ancestral taxa) Node types Speciations Duplications Dubious nodes
Leaves (extant species) Gene tree coverage Genes in multi-species trees Genes in single-species trees Orphaned genes
Gene QC Validated genes Short genes Long genes Split genes
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-
Nematostella vectensis strain CH2 x CH6
-------
Trichoplax adhaerens strain Grell-BS-1999
-------------------------------------------------------------------------------------------
-
Crassostrea gigas
----------
Capitella teleta
----------
-
Trichinella spiralis strain ISS 195 (PRJNA12603)
------------------
----
Trichinella spiralis strain ISS3 (PRJNA257433)
-----------------
Trichinella nelsoni strain ISS37 (PRJNA257433)
-------------
-
Trichinella nativa T_nativa_rf_gd (PRJNA179527)
----------
----
----
Trichinella nativa strain ISS10 (PRJNA257433)
----------------
--------
Trichinella sp. T6 strain ISS34 (PRJNA257433)
----------------------
-
Trichinella murrelli strain ISS417 (PRJNA257433)
-------------
----
----
Trichinella sp. T9 strain ISS409 (PRJNA257433)
----------
-------
-
Trichinella britovi strain ISS120 (PRJNA257433)
-------------------
Trichinella sp. T8 strain ISS272 (PRJNA257433)
----------------------------
Trichinella patagoniensis strain ISS2496 (PRJNA257433)
----------------
-
Trichinella papuae strain ISS1980 (PRJNA257433)
----------
----------------
----
Trichinella zimbabwensis strain ISS1029 (PRJNA257433)
--------------------
Trichinella pseudospiralis strain ISS13 (PRJNA257433)
----------------
-
Trichuris suis strain DCEP-RM93F (PRJNA208416)
----------
-------
----
Trichuris suis strain DCEP-RM93M (PRJNA208415)
-------------------
--------
Trichuris suis T_suis_1.0.allpaths (PRJNA179528)
--------------------------------------------------
---------------
------------
Trichuris trichiura strain Republic of Ecuador (PRJEB535)
-------------------------------
Trichuris muris (PRJEB126)
--------------------------------------------
Soboliphyme baturini strain Alaska/Dall Island (PRJEB516)
---------------------------------------------
Romanomermis culicivorax (PRJEB1358)
-----------------------------------------------------
-
Enterobius vermicularis strain Spain/Canary Islands (PRJEB503)
----------------
Syphacia muris strain Spain/Valencia (PRJEB524)
----------------
-
Onchocerca ochengi strain Ngaoundere (PRJEB1204)
----------------
----
Onchocerca ochengi nOo.2.0 (PRJEB1465)
----------------
--------
Onchocerca volvulus strain O. volvulus Cameroon isolate (PRJEB513)
--------------------
------------
Onchocerca flexuosa strain Red Deer (PRJNA230512)
-------------------------------
Dirofilaria immitis (PRJEB1797)
-----------------------
-
Wuchereria bancrofti W_bancrofti_Jakarta_v2_0_4 (PRJEB536)
----------------
----
----
Wuchereria bancrofti strain pt0022 (PRJNA275548)
----------------------------
-
Brugia malayi strain FR3 (PRJNA10729)
---------------------------------
----------
----
----
Brugia timori strain Flores island/ Indonesia (PRJEB4663)
-----------------------------------
Brugia pahangi strain Scotland/Glasgow (PRJEB497)
-------------------
----
------------
-
Loa loa strain L. loa Cameroon isolate (PRJNA37757)
----------------------------
Loa loa strain CAT (PRJNA246086)
----------------------------
-
Acanthocheilonema viteae (PRJEB1697)
-------------------
---------------
----
Litomosoides sigmodontis strain Bain lab strain (PRJEB3075)
--------------------------------
Elaeophora elaphi (PRJEB502)
-------------------
-------------------------------
Thelazia callipaeda strain Switzerland/Ticino (PRJEB1205)
-------------------
-----------------------------------
Gongylonema pulchrum strain Japan/Hokkaido (PRJEB505)
---------------------------------------------------------
Dracunculus medinensis (PRJEB500)
----------------------------------------------------------
Setaria digitata strain RSCHEM2018 (PRJNA479729)
----------------
----
-
Ascaris suum strain AG01 (PRJNA62057)
-------------------
----
Ascaris suum strain A. suum Australian isolate (PRJNA80881)
-------------------
--------
Ascaris lumbricoides strain Republic of Ecuador (PRJEB4950)
-------------------
--------
-
Parascaris univalens strain PG01 (PRJNA386823)
------------------------------------
-------
Parascaris equorum (PRJEB514)
-------------------------------
Toxocara canis strain PN_DK_2014 (PRJNA248777)
--------------------------------
Anisakis simplex (PRJEB496)
----------------
-
Pristionchus pacificus strain PS312 (PRJNA12644)
----------------
----
Pristionchus exspectatus (PRJEB24288)
----------------
--------
Pristionchus arcanus (PRJEB27334)
----------------
------------
Pristionchus maxplancki (PRJEB27334)
----------------
----------------
Pristionchus japonicus (PRJEB27334)
----------------
--------------------
Pristionchus mayeri (PRJEB27334)
----------------
------------------------
Pristionchus entomophagus (PRJEB27334)
----------------
----------------------------
Pristionchus fissidentatus (PRJEB27334)
----------------------------------------
--------------------------------
Parapristionchus giblindavisi (PRJEB27334)
---------------------------------------------------
Micoletzkya japonica (PRJEB27334)
-------------------
-
Cylicostephanus goldi strain England/Cheshire (PRJEB498)
-------------------
----
Strongylus vulgaris strain USA/Kentucky (PRJEB531)
----------
----------
--------
Oesophagostomum dentatum strain OD-Hann (PRJNA72579)
----------------------
------------
Necator americanus strain N. amaericanus Hunan isolate (PRJNA72135)
----------------------------
-
Ancylostoma ceylanicum strain HY135 (PRJNA231479)
----
--------------------------
----
Ancylostoma ceylanicum A_ceylanicum1.3.ec.cg.pg (PRJNA72583)
-------------------------
----
-
Ancylostoma duodenale strain Baltimore (PRJNA72581)
-------------------
-------------
Ancylostoma caninum strain Baltimore (PRJNA72585)
----------------------------------
-
Haemonchus contortus (PRJEB506)
----------------------------------
----
Haemonchus placei strain MHpl1 (PRJEB509)
----------------------------
--------
--------
Teladorsagia circumcincta (PRJNA72569)
--------------------------------------
-
Nippostrongylus brasiliensis (PRJEB511)
----------------------------------
Heligmosomoides polygyrus (PRJEB15396)
-------------------------
--------------
-
Dictyocaulus viviparus nDv.1.0 (PRJEB5116)
-----------------------------------------------------------
------------
----
Dictyocaulus viviparus D_viviparus_9.2.1.ec.pg (PRJNA72587)
----------
-------------------------------
-
Angiostrongylus cantonensis strain Guangzhou (PRJNA350391)
----------------------------------------
----
Angiostrongylus cantonensis strain Republic of China (PRJEB493)
--------------------------------------------
Angiostrongylus costaricensis strain Costa Rica (PRJEB494)
-------------------------------------------------------------
Heterorhabditis bacteriophora strain M31e (PRJNA13977)
-------------------------------------
-
Caenorhabditis sp. 39 LS-2015 strain NIC564 (PRJEB12602)
-------------------------------------
----
Caenorhabditis panamensis (PRJEB28259)
-------------------------------------
--------
Caenorhabditis becei strain QG2083 (PRJEB28243)
---------------------------------------------
------------
Caenorhabditis sp. 32 LS-2015 strain JU2788 (PRJEB12601)
----------------------------------------------------
Caenorhabditis japonica (PRJNA12591)
----------------------------------------
-
Caenorhabditis sp. 40 LS-2015 strain JU2818 (PRJEB12608)
----------------------------------------
----
Caenorhabditis sp. 26 LS-2015 strain JU2190 (PRJEB12596)
----------------------------------------
--------
Caenorhabditis sinica (PRJNA194557)
-------------------------------------
-----------
-
Caenorhabditis nigoni strain JU1422 (PRJNA384657)
-------------------------------
----------
----
Caenorhabditis briggsae (PRJNA10731)
----------------------------------------------
-
Caenorhabditis remanei CaeRem1.0 (PRJNA248911)
----------------------------------------
-------
----
Caenorhabditis remanei ASM164373v2 (PRJNA248909)
----------------------------------------------
--------
Caenorhabditis remanei C_remanei-15.0.1 (PRJNA53967)
----------------------------------
----
---------------
Caenorhabditis latens (PRJNA248912)
-------------------------------------------------------
-
Caenorhabditis brenneri (PRJNA20035)
-------------------------------------------
Caenorhabditis tropicalis (PRJNA53597)
----------------------------------
-----------------------
-
Caenorhabditis inopinata (PRJDB5687)
-------------------------------------------
Caenorhabditis elegans strain N2 (PRJNA13758)
----------------------------------
-----------------------------------
Caenorhabditis sp. 31 LS-2015 strain JU2585 (PRJEB12600)
--------------------------------------------------------------------
-
Caenorhabditis sp. 38 MB-2015 strain JU2809 (PRJEB11354)
----------------------------------
-------
Caenorhabditis angaria (PRJNA51225)
----------------------------------
-------------------------------------------
Caenorhabditis bovis (PRJEB34497)
--------------------------------------------------------------------------------
Caenorhabditis sp. 21 LS-2015 (PRJEB12595)
----------------------------------
--------------------------------------------
-
Diploscapter coronatus strain PDL0010 (PRJDB3143)
-------------------------
----
-------
Diploscapter pachys strain PF1309 (PRJNA280107)
-------------------------------------------------------------------------------
Oscheius tipulae (PRJEB15512)
--------------------------------------------------------------------------------
Mesorhabditis belari (PRJEB30104)
-------------------
-------
-
Panagrolaimus sp. PS1159 (PRJEB32708)
-------------------------
----
Panagrolaimus davidi (PRJEB32708)
-------------------------
----
-
Panagrolaimus sp. ES5 (PRJEB32708)
-------------------------------
Panagrolaimus superbus (PRJEB32708)
-------------------------
--------
-
Panagrellus redivivus (PRJNA186477)
---------------------------------------------
-------
Halicephalobus sp. WB-2010a (PRJNA528747)
-------------------------------------------
Panagrolaimus sp. JU765 (PRJEB32708)
--------------------------------------------
Acrobeloides nanus (PRJEB26554)
----------------------------
-
Meloidogyne arenaria ASM90000398v1 (PRJEB8714)
----------------------------
----
Meloidogyne arenaria strain HarA (PRJNA340324)
----------------------------
--------
Meloidogyne arenaria strain A2-O Okinawa_01 (PRJNA438575)
-----------------------------------
-
Meloidogyne javanica strain VW4 (PRJNA340324)
----------------
-------------
----
Meloidogyne javanica ASM90000394v1 (PRJEB8714)
-------------------------------------
-
Meloidogyne incognita Meloidogyne_incognita_V3 (PRJEB8714)
----------------------------
----
--------
----
Meloidogyne incognita strain W1 (PRJNA340324)
----------------------------------------
-
Meloidogyne floridensis nMf_1_1 (PRJEB6016)
----------------------------------
-------
Meloidogyne floridensis strain SJF1 (PRJNA340324)
----------------------------------
-----------------------
Meloidogyne enterolobii strain L30 (PRJNA340324)
------------------------------------------------------------
Meloidogyne hapla strain VW9 (PRJNA29083)
----------------------------------
----------------------------
Meloidogyne graminicola (PRJNA411966)
----------------------------------------
-
Globodera pallida strain Lindley (PRJEB123)
----------------------------
-------
------------------------
----
Globodera rostochiensis strain Ro1 (PRJEB13504)
-----------------------------------------------
Heterodera glycines strain TN10 (PRJNA381081)
----
-------------------------------
--------------------------------
-
Ditylenchus dipsaci strain pooled J2 (PRJNA498219)
----------------------------------------
Ditylenchus destructor strain Dd01 (PRJNA312427)
-------------------------------------------------------------------------
Bursaphelenchus xylophilus (PRJEA64437)
-------------------------------------
-
Strongyloides ratti (PRJEB125)
----------
-------------------------
----
Strongyloides stercoralis strain PV0001 (PRJEB528)
-------------------------------------
-------
----
-
Strongyloides papillosus strain LIN (PRJEB525)
--------------------------------------------------------
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Strongyloides venezuelensis (PRJEB530)
---------------------------------------
Parastrongyloides trichosuri strain KNP (PRJEB515)
----------------------------------------
Rhabditophanes sp. KR3021 strain kr 3021 (PRJEB1297)
----------------------------
-
Steinernema feltiae S_felt_v1_submitted (PRJNA204661)
----------------------------
----
Steinernema feltiae strain NW (PRJNA353610)
----------------------------
--------
Steinernema monticolum (PRJNA205067)
----------------------------------
-
Steinernema carpocapsae S_carpo_v1_submitted (PRJNA202318)
---------------------------------------------------------
----
----
Steinernema carpocapsae ASM75764v3 (PRJNA202318)
--------------------------------
Steinernema scapterisci (PRJNA204942)
-------------------------------------
Steinernema glaseri (PRJNA204943)
----------------------------------------------------------------------------------------------
Plectus sambesii strain ES601 (PRJNA390260)
--------------------------------------------------
-
Gyrodactylus salaris strain Lier (PRJNA244375)
-------------------------
Protopolystoma xenopodis (PRJEB1201)
-------------------------
-
Opisthorchis felineus strain AK-0245 (PRJNA413383)
-------------------------
----
Opisthorchis viverrini (PRJNA222628)
-------------------------
----
-
Clonorchis sinensis strain Henan (PRJDA72781)
----------------------
----------
Clonorchis sinensis strain Cs-k2 (PRJNA386618)
-------------
-------------------------
------------
Paragonimus westermani (PRJNA454344)
-------------------------------
-
Fasciola hepatica F_hepatica_1.0.allpaths.pg (PRJNA179522)
-------------------------------
----
Fasciola hepatica Fasciola_10x_pilon (PRJEB25283)
----------------------------
--------
Fasciola gigantica strain Uganda_cow_1 (PRJNA230515)
------------------------------------
Echinostoma caproni strain Egypt (PRJEB1207)
----------------------
--------------------
-
Schistosoma japonicum strain China/Anhui (PRJEA34885)
----------------------------
Schistosoma japonicum strain HuSjv2 (PRJNA520774)
-------------------------
----------------
-
Schistosoma rodhaini strain Republic of Burundi (PRJEB526)
----------------------------------
Schistosoma mansoni (PRJEA36577)
----------------------------
----
-
Schistosoma curassoni strain Senegal/Dakar (PRJEB519)
-
-------------------
-------
----
Schistosoma bovis (PRJNA451066)
----------------------------
--------
Schistosoma haematobium (PRJNA78265)
-------------------------
------------
Schistosoma mattheei strain Zambia/Denwood (PRJEB523)
-------------------
-------------------
Schistosoma margrebowiei strain Zambia (PRJEB522)
-------------------------------------------------
Trichobilharzia regenti (PRJEB4662)
-------------------------
-
Hymenolepis diminuta strain Denmark (PRJEB507)
-------------------------------------
----
Hymenolepis diminuta strain laboratory inbred isolate (PRJEB30942)
----------------------------
-
Hymenolepis microstoma (PRJEB124)
----------------------------
Rodentolepis nana strain Japan (PRJEB508)
----------------------------
-
Taenia asiatica strain TASYD01 (PRJNA299871)
-------------------------
----
----
Taenia saginata strain TSAYD01 (PRJNA71493)
-------------------------------
--------
Taenia multiceps strain Gns01 (PRJNA307624)
-------------------------------
------------
Taenia solium strain Mexico (PRJNA170813)
----------------------------------------------------
----------------------------
Hydatigera taeniaeformis strain Spain/Canary Islands (PRJEB534)
----------------------
----
----
-
Echinococcus granulosus strain G1 (PRJNA182977)
-------------------------------
----
Echinococcus granulosus strain G1 (PRJEB121)
-------------------------------
--------
Echinococcus multilocularis strain Java (PRJEB122)
-----------------------
-------
------------
Echinococcus canadensis (PRJEB8992)
-------------------------------------
Echinococcus oligarthrus strain DaMi1 (PRJEB31222)
----------------------------------------------
Mesocestoides corti strain Specht & Voge 1965 (PRJEB510)
----------------------
-
Spirometra erinaceieuropaei (PRJEB1202)
---------------------------------------
----
Schistocephalus solidus strain NST_G2 (PRJEB527)
-----------------------
Dibothriocephalus latus (PRJEB1206)
----------------------------------------------------
-
Schmidtea mediterranea (PRJNA379262)
----------------
Macrostomum lignano strain DV1 (PRJNA371498)
---------------------------------------------------------------------------------------------
-
Drosophila melanogaster
-------------
Ixodes scapularis strain Wikel
-------------
-
Mus musculus strain reference (CL57BL6)
-------------
----
Rattus norvegicus
-------------
--------
Homo sapiens
--------------------------------------------------------------------------------------
------------
Danio rerio
----------------------
Ciona intestinalis
-----------------------------------------------------------------------------------------------------------
Amphimedon queenslandica
--------------------------------------------------------------------------------------------------------
-
Schizosaccharomyces pombe 972h-
----
Saccharomyces cerevisiae strain S288C