WormBase ParaSite HomeVersion: WBPS15 (WS276)

Comparative Genomics

For full details of The protein tree pipeline and the subsequent prediction of homologues, see the Ensembl Compara documentation.

This page provides a summary of the Ensembl phylogenetic analysis of protein families. The following views are available:

Overall Summary

Legend
Internal nodes (ancestral taxa) Node types Speciations Duplications Dubious nodes
Leaves (extant species) Gene tree coverage Genes in multi-species trees Genes in single-species trees Orphaned genes
Gene QC Validated genes Short genes Long genes Split genes
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Mus musculus strain reference (CL57BL6)
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Rattus norvegicus
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Homo sapiens
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Danio rerio
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Ciona intestinalis
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-
Crassostrea gigas
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Capitella teleta
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-
Macrostomum lignano strain DV1 (PRJNA371498)
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Schmidtea mediterranea (PRJNA379262)
-----------------------------------------
-
Protopolystoma xenopodis (PRJEB1201)
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Gyrodactylus salaris strain Lier (PRJNA244375)
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-
Opisthorchis felineus strain AK-0245 (PRJNA413383)
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Opisthorchis viverrini (PRJNA222628)
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Clonorchis sinensis strain Cs-k2 (PRJNA386618)
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Clonorchis sinensis strain Henan (PRJDA72781)
-------------------------------
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Paragonimus westermani (PRJNA454344)
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Fasciola hepatica F_hepatica_1.0.allpaths.pg (PRJNA179522)
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Fasciola hepatica Fasciola_10x_pilon (PRJEB25283)
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Fasciola gigantica strain Uganda_cow_1 (PRJNA230515)
---------------------------------
Echinostoma caproni strain Egypt (PRJEB1207)
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-
Schistosoma mansoni (PRJEA36577)
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Schistosoma rodhaini strain Republic of Burundi (PRJEB526)
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Schistosoma bovis (PRJNA451066)
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Schistosoma curassoni strain Senegal/Dakar (PRJEB519)
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Schistosoma haematobium (PRJNA78265)
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Schistosoma mattheei strain Zambia/Denwood (PRJEB523)
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Schistosoma margrebowiei strain Zambia (PRJEB522)
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Schistosoma japonicum strain China/Anhui (PRJEA34885)
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Schistosoma japonicum strain HuSjv2 (PRJNA520774)
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Trichobilharzia regenti (PRJEB4662)
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-
Echinococcus granulosus strain G1 (PRJNA182977)
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Echinococcus granulosus strain G1 (PRJEB121)
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Echinococcus multilocularis strain Java (PRJEB122)
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Echinococcus canadensis (PRJEB8992)
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Echinococcus oligarthrus strain DaMi1 (PRJEB31222)
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Taenia asiatica strain TASYD01 (PRJNA299871)
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Taenia saginata strain TSAYD01 (PRJNA71493)
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Taenia multiceps strain Gns01 (PRJNA307624)
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Taenia solium strain Mexico (PRJNA170813)
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Hydatigera taeniaeformis strain Spain/Canary Islands (PRJEB534)
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Hymenolepis diminuta strain laboratory inbred isolate (PRJEB30942)
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Hymenolepis diminuta strain Denmark (PRJEB507)
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Hymenolepis microstoma (PRJEB124)
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Rodentolepis nana strain Japan (PRJEB508)
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Mesocestoides corti strain Specht & Voge 1965 (PRJEB510)
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Spirometra erinaceieuropaei (PRJEB1202)
------------------------------------
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Schistocephalus solidus strain NST_G2 (PRJEB527)
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Dibothriocephalus latus (PRJEB1206)
--------------------------------------------------------
-
Syphacia muris strain Spain/Valencia (PRJEB524)
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Enterobius vermicularis strain Spain/Canary Islands (PRJEB503)
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Ascaris suum strain AG01 (PRJNA62057)
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Ascaris suum strain A. suum Australian isolate (PRJNA80881)
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Ascaris lumbricoides strain Republic of Ecuador (PRJEB4950)
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Parascaris univalens strain PG01 (PRJNA386823)
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Parascaris equorum (PRJEB514)
------------------------------------
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Toxocara canis strain PN_DK_2014 (PRJNA248777)
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Anisakis simplex (PRJEB496)
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Acanthocheilonema viteae (PRJEB1697)
---------------------------------
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Litomosoides sigmodontis strain Bain lab strain (PRJEB3075)
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Elaeophora elaphi (PRJEB502)
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Brugia timori strain Flores island/ Indonesia (PRJEB4663)
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Brugia malayi strain FR3 (PRJNA10729)
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Brugia pahangi strain Scotland/Glasgow (PRJEB497)
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--------
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Wuchereria bancrofti strain pt0022 (PRJNA275548)
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Wuchereria bancrofti W_bancrofti_Jakarta_v2_0_4 (PRJEB536)
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Loa loa strain CAT (PRJNA246086)
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Loa loa strain L. loa Cameroon isolate (PRJNA37757)
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Onchocerca ochengi strain Ngaoundere (PRJEB1204)
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Onchocerca ochengi nOo.2.0 (PRJEB1465)
-------------------------------
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Onchocerca volvulus strain O. volvulus Cameroon isolate (PRJEB513)
----------------------
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Onchocerca flexuosa strain Red Deer (PRJNA230512)
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Dirofilaria immitis (PRJEB1797)
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Thelazia callipaeda strain Switzerland/Ticino (PRJEB1205)
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-----------------------------------
Gongylonema pulchrum strain Japan/Hokkaido (PRJEB505)
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Dracunculus medinensis (PRJEB500)
----------------------------------------------------
Setaria digitata strain RSCHEM2018 (PRJNA479729)
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-
Pristionchus exspectatus (PRJEB24288)
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Pristionchus pacificus strain PS312 (PRJNA12644)
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Pristionchus arcanus (PRJEB27334)
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Pristionchus maxplancki (PRJEB27334)
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Pristionchus japonicus (PRJEB27334)
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Pristionchus mayeri (PRJEB27334)
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Pristionchus entomophagus (PRJEB27334)
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Pristionchus fissidentatus (PRJEB27334)
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--------------------------------
Parapristionchus giblindavisi (PRJEB27334)
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Micoletzkya japonica (PRJEB27334)
-----------------------
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Dictyocaulus viviparus nDv.1.0 (PRJEB5116)
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Dictyocaulus viviparus D_viviparus_9.2.1.ec.pg (PRJNA72587)
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----------------
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Angiostrongylus cantonensis strain Guangzhou (PRJNA350391)
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Angiostrongylus cantonensis strain Republic of China (PRJEB493)
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Angiostrongylus costaricensis strain Costa Rica (PRJEB494)
----------------------------
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Strongylus vulgaris strain USA/Kentucky (PRJEB531)
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Cylicostephanus goldi strain England/Cheshire (PRJEB498)
-------------------------------
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Oesophagostomum dentatum strain OD-Hann (PRJNA72579)
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Necator americanus strain N. amaericanus Hunan isolate (PRJNA72135)
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Ancylostoma caninum strain Baltimore (PRJNA72585)
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Ancylostoma duodenale strain Baltimore (PRJNA72581)
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Ancylostoma ceylanicum A_ceylanicum1.3.ec.cg.pg (PRJNA72583)
----------------------
--------------------------------
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Ancylostoma ceylanicum strain HY135 (PRJNA231479)
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Nippostrongylus brasiliensis (PRJEB511)
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Heligmosomoides polygyrus (PRJEB15396)
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Haemonchus placei strain MHpl1 (PRJEB509)
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Haemonchus contortus (PRJEB506)
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Teladorsagia circumcincta (PRJNA72569)
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Heterorhabditis bacteriophora strain M31e (PRJNA13977)
-----------------------------------------------------------------------
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Diploscapter pachys strain PF1309 (PRJNA280107)
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Diploscapter coronatus strain PDL0010 (PRJDB3143)
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Caenorhabditis inopinata (PRJDB5687)
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Caenorhabditis elegans strain N2 (PRJNA13758)
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Caenorhabditis sp. 40 LS-2015 strain JU2818 (PRJEB12608)
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Caenorhabditis sp. 26 LS-2015 strain JU2190 (PRJEB12596)
----------------------------------
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Caenorhabditis sinica (PRJNA194557)
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Caenorhabditis nigoni strain JU1422 (PRJNA384657)
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Caenorhabditis briggsae (PRJNA10731)
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Caenorhabditis remanei CaeRem1.0 (PRJNA248911)
----------------------------------
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Caenorhabditis remanei ASM164373v2 (PRJNA248909)
----
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Caenorhabditis remanei C_remanei-15.0.1 (PRJNA53967)
-------------------------------------
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Caenorhabditis latens (PRJNA248912)
-------------------------------------------------------
-
Caenorhabditis tropicalis (PRJNA53597)
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Caenorhabditis brenneri (PRJNA20035)
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Caenorhabditis panamensis (PRJEB28259)
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Caenorhabditis sp. 39 LS-2015 strain NIC564 (PRJEB12602)
----------------------------------------------
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Caenorhabditis becei strain QG2083 (PRJEB28243)
-------------------------------
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Caenorhabditis sp. 32 LS-2015 strain JU2788 (PRJEB12601)
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Caenorhabditis japonica (PRJNA12591)
----------------------------------------
-----------------------------------
Caenorhabditis sp. 31 LS-2015 strain JU2585 (PRJEB12600)
----------------------
--------------------------------------------------
-
Caenorhabditis sp. 38 MB-2015 strain JU2809 (PRJEB11354)
-------------------------
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Caenorhabditis angaria (PRJNA51225)
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Caenorhabditis bovis (PRJEB34497)
-----------------------------------------------------------------------
Caenorhabditis sp. 21 LS-2015 (PRJEB12595)
-------------------
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Oscheius tipulae (PRJEB15512)
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Mesorhabditis belari (PRJEB30104)
----------------------------
-
Strongyloides ratti (PRJEB125)
----------------------------
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Strongyloides stercoralis strain PV0001 (PRJEB528)
----------------------------
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-
Strongyloides venezuelensis (PRJEB530)
--------------------------------------------------------
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Strongyloides papillosus strain LIN (PRJEB525)
------------------------------------------
Parastrongyloides trichosuri strain KNP (PRJEB515)
-------------------------------------------
Rhabditophanes sp. KR3021 strain kr 3021 (PRJEB1297)
-----------------------------------
-
Panagrellus redivivus (PRJNA186477)
-------------------------------
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Halicephalobus sp. WB-2010a (PRJNA528747)
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-------------------------
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Panagrolaimus davidi (PRJEB32708)
----------------------------
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Panagrolaimus sp. PS1159 (PRJEB32708)
----------------------------------
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Panagrolaimus sp. ES5 (PRJEB32708)
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Panagrolaimus superbus (PRJEB32708)
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Panagrolaimus sp. JU765 (PRJEB32708)
--------------------------------------------------
Acrobeloides nanus (PRJEB26554)
----------------------------------
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Meloidogyne incognita Meloidogyne_incognita_V3 (PRJEB8714)
--------------------------------------
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Meloidogyne incognita strain W1 (PRJNA340324)
-------------------------------------
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Meloidogyne floridensis strain SJF1 (PRJNA340324)
----------------------------------
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Meloidogyne floridensis nMf_1_1 (PRJEB6016)
--------------------------------------------
-
Meloidogyne javanica ASM90000394v1 (PRJEB8714)
-------------------------------------
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Meloidogyne javanica strain VW4 (PRJNA340324)
----------------------------
----
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-
Meloidogyne arenaria strain HarA (PRJNA340324)
-------------------------------------
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Meloidogyne arenaria ASM90000398v1 (PRJEB8714)
-------------------------------
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Meloidogyne arenaria strain A2-O Okinawa_01 (PRJNA438575)
----------------------------------
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-----------------------
Meloidogyne enterolobii strain L30 (PRJNA340324)
----
---------------------------------------------------
Meloidogyne hapla strain VW9 (PRJNA29083)
-------------------------------
----------------------------
Meloidogyne graminicola (PRJNA411966)
-------------------------------------
-
Globodera rostochiensis strain Ro1 (PRJEB13504)
-------------------------------
------------------------
----
Globodera pallida strain Lindley (PRJEB123)
----------------
-----------------------
Heterodera glycines strain TN10 (PRJNA381081)
-------------------------
--------------------------------
-
Ditylenchus destructor strain Dd01 (PRJNA312427)
----------------------------
Ditylenchus dipsaci strain pooled J2 (PRJNA498219)
-------------------------------------------------------------
Bursaphelenchus xylophilus (PRJEA64437)
-------------------------
-
Steinernema feltiae strain NW (PRJNA353610)
-------------------------
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Steinernema feltiae S_felt_v1_submitted (PRJNA204661)
-------------------------
--------
Steinernema monticolum (PRJNA205067)
-------------------------------
-
Steinernema carpocapsae S_carpo_v1_submitted (PRJNA202318)
------------------------------------------------------
----
----
Steinernema carpocapsae ASM75764v3 (PRJNA202318)
-----------------------------
Steinernema scapterisci (PRJNA204942)
----------------------------------
Steinernema glaseri (PRJNA204943)
-------------------------------------------------------------------------------------------
Plectus sambesii strain ES601 (PRJNA390260)
-------------------
-
Trichinella sp. T9 strain ISS409 (PRJNA257433)
-------------------
----
Trichinella murrelli strain ISS417 (PRJNA257433)
----------------------
-
Trichinella britovi strain ISS120 (PRJNA257433)
-------------------
----
Trichinella sp. T8 strain ISS272 (PRJNA257433)
-------------------------
-
Trichinella nativa T_nativa_rf_gd (PRJNA179527)
-
----------------
----
----
Trichinella nativa strain ISS10 (PRJNA257433)
-----------------------------
Trichinella sp. T6 strain ISS34 (PRJNA257433)
-------------------
----------------
Trichinella patagoniensis strain ISS2496 (PRJNA257433)
-------------------------
-
Trichinella spiralis strain ISS3 (PRJNA257433)
-------------------
------------
----
Trichinella spiralis strain ISS 195 (PRJNA12603)
-----------------------------
Trichinella nelsoni strain ISS37 (PRJNA257433)
-------------------------
-
Trichinella papuae strain ISS1980 (PRJNA257433)
----------------------------------
----
Trichinella zimbabwensis strain ISS1029 (PRJNA257433)
-------------------
--------
Trichinella pseudospiralis strain ISS13 (PRJNA257433)
-------------------------
-
Trichuris suis strain DCEP-RM93F (PRJNA208416)
-------------------------
----
Trichuris suis strain DCEP-RM93M (PRJNA208415)
-------------------
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--------
Trichuris suis T_suis_1.0.allpaths (PRJNA179528)
---------------------------------
------------
Trichuris trichiura strain Republic of Ecuador (PRJEB535)
--------------------------------------------------------
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Trichuris muris (PRJEB126)
-----------------------------------------------
Soboliphyme baturini strain Alaska/Dall Island (PRJEB516)
------------------------------------------------
Romanomermis culicivorax (PRJEB1358)
---------------------------------------------------------------------------------------------
-
Ixodes scapularis strain Wikel
-------------
Drosophila melanogaster
------------------------------------------------------------------------------------------------------
-
Nematostella vectensis strain CH2 x CH6
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Trichoplax adhaerens strain Grell-BS-1999
-----------------------------------------------------------------------------------------------------------
Amphimedon queenslandica
--------------------------------------------------------------------------------------------------------
-
Saccharomyces cerevisiae strain S288C
----
Schizosaccharomyces pombe 972h-