WormBase ParaSite HomeVersion: WBPS17 (WS282)-  Archive: WBPS16

Comparative Genomics

For full details of The protein tree pipeline and the subsequent prediction of homologues, see the Ensembl Compara documentation.

This page provides a summary of the Ensembl phylogenetic analysis of protein families. The following views are available:

Overall Summary

Legend
Internal nodes (ancestral taxa) Node types Speciations Duplications Dubious nodes
Leaves (extant species) Gene tree coverage Genes in multi-species trees Genes in single-species trees Orphaned genes
Gene QC Validated genes Short genes Long genes Split genes
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Ixodes scapularis strain Wikel
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Drosophila melanogaster
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-
Taenia asiatica strain TASYD01 (PRJNA299871)
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Taenia saginata strain TSAYD01 (PRJNA71493)
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Taenia multiceps strain Gns01 (PRJNA307624)
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Taenia solium strain Mexico (PRJNA170813)
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Hydatigera taeniaeformis strain Spain/Canary Islands (PRJEB534)
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-
Echinococcus granulosus strain G1 (PRJNA182977)
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Echinococcus granulosus strain G1 (PRJEB121)
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Echinococcus multilocularis strain Java (PRJEB122)
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Echinococcus canadensis (PRJEB8992)
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Echinococcus oligarthrus strain DaMi1 (PRJEB31222)
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-
Hymenolepis microstoma (PRJEB124)
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Rodentolepis nana strain Japan (PRJEB508)
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Hymenolepis diminuta strain laboratory inbred isolate (PRJEB30942)
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Mesocestoides corti strain Specht & Voge 1965 (PRJEB510)
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-
Schistocephalus solidus strain NST_G2 (PRJEB527)
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Spirometra erinaceieuropaei (PRJEB1202)
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Dibothriocephalus latus (PRJEB1206)
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-
Gyrodactylus bullatarudis strain Rox2016 (PRJNA532341)
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----------------------------
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Gyrodactylus salaris strain Lier (PRJNA244375)
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Protopolystoma xenopodis (PRJEB1201)
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-
Schistosoma mansoni (PRJEA36577)
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Schistosoma rodhaini strain Republic of Burundi (PRJEB526)
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-
Schistosoma bovis (PRJNA451066)
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Schistosoma curassoni strain Senegal/Dakar (PRJEB519)
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----
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Schistosoma haematobium (PRJNA78265)
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Schistosoma mattheei strain Zambia/Denwood (PRJEB523)
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Schistosoma margrebowiei strain Zambia (PRJEB522)
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Schistosoma japonicum strain HuSjv2 (PRJNA520774)
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----------------------------------
Trichobilharzia regenti (PRJEB4662)
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-
Opisthorchis felineus strain AK-0245 (PRJNA413383)
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Opisthorchis viverrini (PRJNA222628)
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Clonorchis sinensis strain Cs-k2 (PRJNA386618)
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Paragonimus westermani (PRJNA454344)
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Atriophallophorus winterbourni strain NZ2018 (PRJNA636673)
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Fasciola hepatica Fasciola_10x_pilon (PRJEB25283)
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Fasciola hepatica F_hepatica_1.0.allpaths.pg (PRJNA179522)
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Fasciola gigantica strain Uganda_cow_1 (PRJNA230515)
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Fasciolopsis buski strain HT (PRJNA284521)
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Echinostoma caproni strain Egypt (PRJEB1207)
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Schmidtea mediterranea (PRJNA379262)
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Macrostomum lignano strain DV1 (PRJNA371498)
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Ascaris lumbricoides strain Republic of Ecuador (PRJEB4950)
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Ascaris suum strain AG01 (PRJNA62057)
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Parascaris univalens strain PG01 (PRJNA386823)
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Parascaris equorum (PRJEB514)
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Toxocara canis strain PN_DK_2014 (PRJNA248777)
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Anisakis simplex (PRJEB496)
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Onchocerca ochengi strain Ngaoundere (PRJEB1204)
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Onchocerca volvulus strain O. volvulus Cameroon isolate (PRJEB513)
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Onchocerca flexuosa strain Red Deer (PRJNA230512)
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Dirofilaria immitis (PRJEB1797)
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-
Cercopithifilaria johnstoni (PRJEB47283)
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----
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Acanthocheilonema viteae (PRJEB1697)
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Litomosoides sigmodontis strain Bain lab strain (PRJEB3075)
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Elaeophora elaphi (PRJEB502)
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-
Brugia malayi strain FR3 (PRJNA10729)
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Brugia timori strain Flores island/ Indonesia (PRJEB4663)
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Brugia pahangi strain Scotland/Glasgow (PRJEB497)
---------------------------------
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Wuchereria bancrofti strain pt0022 (PRJNA275548)
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Loa loa strain CAT (PRJNA246086)
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Thelazia callipaeda strain Switzerland/Ticino (PRJEB1205)
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Gongylonema pulchrum strain Japan/Hokkaido (PRJEB505)
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Dracunculus medinensis (PRJEB500)
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Setaria digitata strain RSCHEM2018 (PRJNA479729)
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-
Enterobius vermicularis strain Spain/Canary Islands (PRJEB503)
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Syphacia muris strain Spain/Valencia (PRJEB524)
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-
Steinernema carpocapsae (PRJNA202318)
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Steinernema scapterisci (PRJNA204942)
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Steinernema feltiae strain NW (PRJNA353610)
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Steinernema monticolum (PRJNA205067)
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Steinernema glaseri (PRJNA204943)
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-
Panagrolaimus sp. PS1159 (PRJEB32708)
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Panagrolaimus davidi (PRJEB32708)
----------------------
-
Panagrolaimus sp. ES5 (PRJEB32708)
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Panagrolaimus superbus (PRJEB32708)
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Halicephalobus sp. NKZ332 (PRJNA555616)
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-
Panagrellus redivivus (PRJNA186477)
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Halicephalobus sp. WB-2010a (PRJNA528747)
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Panagrolaimus sp. JU765 (PRJEB32708)
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Acrobeloides nanus (PRJEB26554)
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-
Meloidogyne floridensis strain SJF1 (PRJNA340324)
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Meloidogyne incognita (PRJEB8714)
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Meloidogyne javanica strain VW4 (PRJNA340324)
----------------------------
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Meloidogyne arenaria strain A2-O Okinawa_01 (PRJNA438575)
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Meloidogyne enterolobii strain L30 (PRJNA340324)
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Meloidogyne hapla strain VW9 (PRJNA29083)
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Meloidogyne graminicola (PRJNA411966)
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-
Globodera pallida strain Lindley (PRJEB123)
----------------------------
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Globodera rostochiensis strain Ro1 (PRJEB13504)
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Heterodera glycines strain TN10 (PRJNA381081)
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Heterodera schachtii strain Bonn (PRJNA722882)
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Ditylenchus dipsaci strain pooled J2 (PRJNA498219)
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Ditylenchus destructor strain Dd01 (PRJNA312427)
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Bursaphelenchus xylophilus strain Ka4C1 (PRJEB40022)
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Bursaphelenchus xylophilus ASM23113v1_submitted (PRJEA64437)
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Bursaphelenchus okinawaensis strain SH1 (PRJEB40023)
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Strongyloides venezuelensis (PRJEB530)
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Strongyloides papillosus strain LIN (PRJEB525)
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-
Strongyloides ratti (PRJEB125)
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Strongyloides stercoralis strain PV0001 (PRJEB528)
------------------------------
Parastrongyloides trichosuri strain KNP (PRJEB515)
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Rhabditophanes sp. KR3021 strain kr 3021 (PRJEB1297)
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-
Pristionchus exspectatus (PRJEB24288)
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Pristionchus pacificus strain PS312 (PRJNA12644)
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Pristionchus arcanus (PRJEB27334)
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Pristionchus maxplancki (PRJEB27334)
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Pristionchus japonicus (PRJEB27334)
----
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Pristionchus mayeri (PRJEB27334)
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Pristionchus entomophagus (PRJEB27334)
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----------------------------
Pristionchus fissidentatus (PRJEB27334)
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--------------------------------
Parapristionchus giblindavisi (PRJEB27334)
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Micoletzkya japonica (PRJEB27334)
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Oscheius tipulae Oscheius_tipulae_assembly_v2 (PRJEB15512)
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Oscheius tipulae strain CEW1 (PRJNA644888)
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Diploscapter coronatus strain PDL0010 (PRJDB3143)
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Diploscapter pachys strain PF1309 (PRJNA280107)
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Caenorhabditis angaria (PRJNA51225)
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Caenorhabditis sp. 38 MB-2015 strain JU2809 (PRJEB11354)
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Caenorhabditis inopinata (PRJDB5687)
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Caenorhabditis elegans strain N2 (PRJNA13758)
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-
Caenorhabditis nigoni strain JU1422 (PRJNA384657)
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Caenorhabditis briggsae (PRJNA10731)
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Caenorhabditis sp. 26 LS-2015 strain JU2190 (PRJEB12596)
----------------------------
----
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----
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Caenorhabditis sp. 40 LS-2015 strain JU2818 (PRJEB12608)
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--------------------------------
Caenorhabditis sinica (PRJNA194557)
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Caenorhabditis remanei strain PX506 (PRJNA577507)
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Caenorhabditis remanei C_remanei-15.0.1 (PRJNA53967)
----------------------
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Caenorhabditis latens (PRJNA248912)
-------------------------------------------------------
-
Caenorhabditis brenneri (PRJNA20035)
-------------------------------
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Caenorhabditis tropicalis (PRJNA53597)
----------------------------------------------
-
Caenorhabditis sp. 39 LS-2015 strain NIC564 (PRJEB12602)
-------------------------------------
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Caenorhabditis panamensis (PRJEB28259)
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Caenorhabditis becei strain QG2083 (PRJEB28243)
----------------------------
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Caenorhabditis sp. 32 LS-2015 strain JU2788 (PRJEB12601)
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Caenorhabditis japonica (PRJNA12591)
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Caenorhabditis sp. 31 LS-2015 strain JU2585 (PRJEB12600)
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Caenorhabditis bovis (PRJEB34497)
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Caenorhabditis sp. 21 LS-2015 (PRJEB12595)
-------------------
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Mesorhabditis belari (PRJEB30104)
----------------------
-
Angiostrongylus costaricensis strain Costa Rica (PRJEB494)
----------------------
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Angiostrongylus vasorum strain ZH-2019-22 (PRJNA663250)
------------------------------
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Angiostrongylus cantonensis strain Guangzhou (PRJNA350391)
---------------------------------
Dictyocaulus viviparus (PRJNA72587)
----
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-
Haemonchus contortus (PRJEB506)
----------------------
----
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Haemonchus placei strain MHpl1 (PRJEB509)
--------------------------------
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Teladorsagia circumcincta (PRJNA72569)
-----------------------------------
-
Nippostrongylus brasiliensis (PRJEB511)
-------------------------------
Heligmosomoides polygyrus (PRJEB15396)
-------------------------
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-
Cylicostephanus goldi strain England/Cheshire (PRJEB498)
-----------------------------------------------
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Strongylus vulgaris strain USA/Kentucky (PRJEB531)
-------------------------
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Oesophagostomum dentatum strain OD-Hann (PRJNA72579)
----------------------
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Necator americanus strain N. amaericanus Hunan isolate (PRJNA72135)
-------------------------
-
Ancylostoma caninum strain Baltimore (PRJNA72585)
--------------------------
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Ancylostoma duodenale strain Baltimore (PRJNA72581)
--------------------------
Ancylostoma ceylanicum strain HY135 (PRJNA231479)
-------------------------------------------
Heterorhabditis bacteriophora strain M31e (PRJNA13977)
----------------------------------------------------------------------------------------
Plectus sambesii strain ES601 (PRJNA390260)
----------------
-
Trichinella papuae strain ISS1980 (PRJNA257433)
----------------------------
----
Trichinella zimbabwensis strain ISS1029 (PRJNA257433)
-----------------------
Trichinella pseudospiralis strain ISS13 (PRJNA257433)
-------------------
-
Trichinella sp. T9 strain ISS409 (PRJNA257433)
----------------
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----
Trichinella murrelli strain ISS417 (PRJNA257433)
----
-------------------
----
-
Trichinella sp. T8 strain ISS272 (PRJNA257433)
-------------------------------
Trichinella britovi strain ISS120 (PRJNA257433)
-------------------------
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-
Trichinella nativa strain ISS10 (PRJNA257433)
-------------------
----
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Trichinella sp. T6 strain ISS34 (PRJNA257433)
----------------------------------------
Trichinella patagoniensis strain ISS2496 (PRJNA257433)
-------------------------------------
-
Trichinella nelsoni strain ISS37 (PRJNA257433)
-------------------
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Trichinella spiralis strain ISS 195 (PRJNA12603)
----------------------------
-
Trichuris trichiura strain Republic of Ecuador (PRJEB535)
--------------------------------------------------------
-----------------------
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Trichuris suis (PRJNA179528)
--------------------------
Trichuris muris (PRJEB126)
----
--------------------------------------------
Soboliphyme baturini strain Alaska/Dall Island (PRJEB516)
---------------------------------------------------
Romanomermis culicivorax (PRJEB1358)
----------------------------------------------------------------------------------------------------
-
Capitella teleta
----------------
Crassostrea gigas
----------------
-
Rattus norvegicus strain BN/NHsdMcwi
----------------
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Mus musculus reference (CL57BL6) strain
-
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Homo sapiens
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Danio rerio
-------------------------
Ciona intestinalis
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Nematostella vectensis strain CH2 x CH6
----------
Trichoplax adhaerens strain Grell-BS-1999
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Amphimedon queenslandica
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Schizosaccharomyces pombe 972h-
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Saccharomyces cerevisiae S288C