Comparative Genomics

For full details of The protein tree pipeline and the subsequent prediction of homologues, see the Ensembl Compara documentation.

• Overview
• Gene tree coverage and Gene QC for each species
• Size of gene trees (split by their root taxon)
• Gene tree nodes, and the inference of speciation / duplication events

Overall Summary

Legend
Internal nodes (ancestral taxa)	Node types	Speciations	Duplications	Dubious nodes
Leaves (extant species)	Gene tree coverage	Genes in multi-species trees	Genes in single-species trees	Orphaned genes
	Gene QC	Validated genes	Short genes	Long genes	Split genes

Trichoplax adhaerens strain Grell-BS-1999

Nematostella vectensis strain CH2 x CH6

Mus musculus reference (CL57BL6) strain

Rattus norvegicus strain BN/NHsdMcwi

Homo sapiens

Danio rerio

Ciona intestinalis

Crassostrea gigas

Capitella teleta

Trichobilharzia regenti strain tdTriRege1.1 (PRJEB44434)

Trichobilharzia szidati strain tdTriSzid1.1 (PRJEB44434)

Heterobilharzia americana strain tdHetHame1.1 (PRJEB44434)

Schistosoma curassoni strain tdSchCurr1.1 (PRJEB44434)

Schistosoma bovis strain tdSchBovi1.1 (PRJEB44434)

Schistosoma guineensis strain tdSchGuin1.1 (PRJEB44434)

Schistosoma haematobium (PRJNA78265)

Schistosoma intercalatum strain tdSchInte1.1 (PRJEB44434)

Schistosoma mattheei strain tdSchMatt1.1 (PRJEB44434)

Schistosoma spindale strain tdSchSpin1.1 (PRJEB44434)

Schistosoma margrebowiei strain tdSchMarg1.1 (PRJEB44434)

Schistosoma rodhaini strain tdSchRodh1.1 (PRJEB44434)

Schistosoma mansoni (PRJEA36577)

Schistosoma turkestanicum strain tdSchTurk1.1 (PRJEB44434)

Schistosoma japonicum strain F4M4 (PRJNA724792)

Fasciola hepatica strain S (PRJEB58756)

Fasciola hepatica F_hepatica_1.0.allpaths.pg (PRJNA179522)

Fasciola gigantica strain Uganda_cow_1 (PRJNA230515)

Echinostoma caproni strain Egypt (PRJEB1207)

Fasciolopsis buski strain HT (PRJNA284521)

Dicrocoelium dendriticum strain tdDicDend1.1 (PRJEB44434)

Opisthorchis viverrini (PRJNA222628)

Opisthorchis felineus strain AK-0245 (PRJNA413383)

Clonorchis sinensis strain Cs-k2 (PRJNA386618)

Paragonimus heterotremus strain HASH(0x251c900) (PRJNA284523)

Paragonimus skrjabini miyazakii strain HASH(0x3fae100) (PRJNA245325)

Paragonimus kellicotti strain Missouri (PRJNA179523)

Paragonimus westermani (PRJNA454344)

Atriophallophorus winterbourni strain NZ2018 (PRJNA636673)

Gyrodactylus salaris strain Lier (PRJNA244375)

Gyrodactylus bullatarudis strain Rox2016 (PRJNA532341)

Protopolystoma xenopodis (PRJEB1201)

Echinococcus granulosus strain EgG1s_protoscolex (PRJNA754835)

Echinococcus granulosus strain G1 (PRJEB121)

Echinococcus multilocularis strain Java (PRJEB122)

Echinococcus canadensis (PRJEB8992)

Echinococcus oligarthrus strain DaMi1 (PRJEB31222)

Taenia saginata strain TSAYD01 (PRJNA71493)

Taenia asiatica strain TASYD01 (PRJNA299871)

Taenia multiceps strain Gns01 (PRJNA307624)

Taenia solium strain Mexico (PRJNA170813)

Hydatigera taeniaeformis strain Spain/Canary Islands (PRJEB534)

Hymenolepis microstoma (PRJEB124)

Rodentolepis nana strain Japan (PRJEB508)

Hymenolepis diminuta strain laboratory inbred isolate (PRJEB30942)

Mesocestoides corti strain Specht & Voge 1965 (PRJEB510)

Spirometra erinaceieuropaei (PRJEB1202)

Schistocephalus solidus strain NST_G2 (PRJEB527)

Dibothriocephalus latus (PRJEB1206)

Schmidtea mediterranea strain S2F19 (PRJNA885486)

Macrostomum lignano strain DV1 (PRJNA371498)

Trichinella spiralis strain ISS 195 (PRJNA12603)

Trichinella nelsoni strain ISS37 (PRJNA257433)

Trichinella nativa strain ISS10 (PRJNA257433)

Trichinella sp. T6 strain ISS34 (PRJNA257433)

Trichinella sp. T9 strain ISS409 (PRJNA257433)

Trichinella murrelli strain ISS417 (PRJNA257433)

Trichinella britovi strain ISS120 (PRJNA257433)

Trichinella sp. T8 strain ISS272 (PRJNA257433)

Trichinella patagoniensis strain ISS2496 (PRJNA257433)

Trichinella papuae strain ISS1980 (PRJNA257433)

Trichinella zimbabwensis strain ISS1029 (PRJNA257433)

Trichinella pseudospiralis strain ISS13 (PRJNA257433)

Trichuris trichiura strain Republic of Ecuador (PRJEB535)

Trichuris suis (PRJNA179528)

Trichuris muris (PRJEB126)

Soboliphyme baturini strain Alaska/Dall Island (PRJEB516)

Mesodorylaimus sp. YZB2_4 strain HASH(0x248fae0) (PRJNA953805)

Romanomermis culicivorax (PRJEB1358)

Enterobius vermicularis strain Spain/Canary Islands (PRJEB503)

Syphacia muris strain Spain/Valencia (PRJEB524)

Parascaris equorum (PRJEB514)

Parascaris univalens strain PG01 (PRJNA386823)

Ascaris suum strain AG01 (PRJNA62057)

Ascaris lumbricoides strain Republic of Ecuador (PRJEB4950)

Toxocara canis strain PN_DK_2014 (PRJNA248777)

Anisakis simplex (PRJEB496)

Onchocerca ochengi strain Ngaoundere (PRJEB1204)

Onchocerca volvulus strain O. volvulus Cameroon isolate (PRJEB513)

Onchocerca flexuosa strain Red Deer (PRJNA230512)

Dirofilaria immitis (PRJEB1797)

Acanthocheilonema viteae (PRJEB1697)

Cercopithifilaria johnstoni (PRJEB47283)

Litomosoides sigmodontis strain Bain lab strain (PRJEB3075)

Elaeophora elaphi (PRJEB502)

Brugia timori strain Flores island/ Indonesia (PRJEB4663)

Brugia malayi strain FR3 (PRJNA10729)

Brugia pahangi strain Scotland/Glasgow (PRJEB497)

Wuchereria bancrofti strain 17-3 (PRJNA275548)

Loa loa strain CAT (PRJNA246086)

Thelazia callipaeda strain Switzerland/Ticino (PRJEB1205)

Gongylonema pulchrum strain Japan/Hokkaido (PRJEB505)

Dracunculus medinensis (PRJEB500)

Setaria digitata strain RSCHEM2018 (PRJNA479729)

Trissonchulus latispiculum strain HASH(0x3ac59f0) (PRJNA953805)

Trissonchulus sp. WLG1_4 strain HASH(0x3ccc910) (PRJNA953805)

Enoplolaimus lenunculus strain HASH(0x26313f8) (PRJNA953805)

Trileptium ribeirensis strain HASH(0x26e2a80) (PRJNA953805)

Steinernema monticolum (PRJNA205067)

Steinernema feltiae strain NW (PRJNA353610)

Steinernema carpocapsae (PRJNA202318)

Steinernema scapterisci (PRJNA204942)

Steinernema hermaphroditum strain PS9179 (PRJNA982879)

Steinernema glaseri (PRJNA204943)

Bursaphelenchus xylophilus ASM23113v1_submitted (PRJEA64437)

Bursaphelenchus xylophilus strain Ka4C1 (PRJEB40022)

Bursaphelenchus okinawaensis strain SH1 (PRJEB40023)

Aphelenchoides fujianensis strain Dali (PRJNA834627)

Aphelenchoides besseyi strain APVT (PRJNA834627)

Aphelenchoides bicaudatus strain Fsh (PRJNA834627)

Ditylenchus destructor strain Dd01 (PRJNA312427)

Ditylenchus dipsaci strain pooled J2 (PRJNA498219)

Meloidogyne floridensis strain SJF1 (PRJNA340324)

Meloidogyne incognita (PRJEB8714)

Meloidogyne arenaria strain A2-O Okinawa_01 (PRJNA438575)

Meloidogyne javanica strain VW4 (PRJNA340324)

Meloidogyne enterolobii strain Swiss

Meloidogyne hapla strain VW9 (PRJNA29083)

Meloidogyne graminicola (PRJNA411966)

Meloidogyne chitwoodi strain Race1 (PRJNA666745)

Globodera pallida strain D383 (PRJNA764088)

Globodera pallida strain Lindley (PRJEB123)

Globodera rostochiensis strain Ro1 (PRJEB13504)

Heterodera schachtii strain Bonn (PRJNA522950)

Heterodera glycines strain TN10 (PRJNA381081)

Bradynema listronoti strain AAFC-BrLi-01_J3_LR_R9 (PRJNA842945)

Panagrolaimus sp. PS1159 (PRJEB32708)

Panagrolaimus davidi (PRJEB32708)

Panagrolaimus sp. ES5 (PRJEB32708)

Panagrolaimus superbus (PRJEB32708)

Panagrolaimus sp. JU765 (PRJEB32708)

Halicephalobus mephisto strain m2B (PRJNA528747)

Panagrellus redivivus (PRJNA186477)

Halicephalobus sp. NKZ332 (PRJNA555616)

Acrobeloides nanus (PRJEB26554)

Strongyloides ratti (PRJEB125)

Strongyloides stercoralis strain PV001 (PRJNA930454)

Strongyloides papillosus strain LIN (PRJEB525)

Strongyloides venezuelensis (PRJEB530)

Parastrongyloides trichosuri strain KNP (PRJEB515)

Rhabditophanes sp. KR3021 strain kr 3021 (PRJEB1297)

Pristionchus pacificus strain PS312 (PRJNA12644)

Pristionchus exspectatus (PRJEB46690)

Pristionchus arcanus (PRJEB27334)

Pristionchus maxplancki (PRJEB27334)

Pristionchus japonicus (PRJEB27334)

Pristionchus mayeri (PRJEB27334)

Pristionchus entomophagus (PRJEB27334)

Pristionchus fissidentatus (PRJEB27334)

Parapristionchus giblindavisi (PRJEB53331)

Micoletzkya japonica (PRJEB27334)

Diplogasteroides magnus strain TMG144 (PRJNA655932)

Allodiplogaster sudhausi strain HASH(0x2b14c20) (PRJEB48369)

Koerneria luziae strain NKZ323 (PRJNA655932)

Levipalatum texanum strain TMG5 (PRJNA655932)

Mesorhabditis spiculigera strain AF72 (PRJEB59059)

Mesorhabditis belari strain JU2817 (PRJEB61636)

Diploscapter pachys strain PF1309 (PRJNA280107)

Diploscapter coronatus strain PDL0010 (PRJDB3143)

Caenorhabditis quiockensis strain JU2809 (PRJEB11354)

Caenorhabditis angaria (PRJNA51225)

Caenorhabditis inopinata (PRJDB5687)

Caenorhabditis elegans strain N2 (PRJNA13758)

Caenorhabditis brenneri (PRJNA20035)

Caenorhabditis tropicalis (PRJNA53597)

Caenorhabditis tribulationis strain JU2818 (PRJEB12608)

Caenorhabditis zanzibari strain JU2190 (PRJEB12596)

Caenorhabditis sinica (PRJNA194557)

Caenorhabditis briggsae (PRJNA10731)

Caenorhabditis nigoni strain JU1422 (PRJNA384657)

Caenorhabditis remanei strain PX506 (PRJNA577507)

Caenorhabditis remanei C_remanei-15.0.1 (PRJNA53967)

Caenorhabditis latens (PRJNA248912)

Caenorhabditis panamensis (PRJEB28259)

Caenorhabditis waitukubuli strain NIC564 (PRJEB12602)

Caenorhabditis becei strain QG2083 (PRJEB28243)

Caenorhabditis sulstoni strain JU2788 (PRJEB12601)

Caenorhabditis japonica (PRJNA12591)

Caenorhabditis uteleia strain JU2585 (PRJEB12600)

Caenorhabditis bovis (PRJEB34497)

Caenorhabditis auriculariae strain NKZ352 (PRJEB40642)

Caenorhabditis parvicauda (PRJEB12595)

Oscheius tipulae strain CEW1 (PRJNA644888)

Oscheius tipulae Oscheius_tipulae_assembly_v2 (PRJEB15512)

Auanema sp. JU1783 strain HASH(0x208d358) (PRJEB51845)

Angiostrongylus vasorum strain ZH-2019-22 (PRJNA663250)

Angiostrongylus costaricensis strain Costa Rica (PRJEB494)

Angiostrongylus cantonensis strain Guangzhou (PRJNA350391)

Dictyocaulus viviparus (PRJNA72587)

Cylicocyclus nassatus strain Nouzilly (PRJEB63274)

Cylicostephanus goldi strain England/Cheshire (PRJEB498)

Strongylus vulgaris strain USA/Kentucky (PRJEB531)

Oesophagostomum dentatum strain OD-Hann (PRJNA72579)

Parelaphostrongylus tenuis strain MNPRO001-30 (PRJNA729714)

Necator americanus strain HASH(0x2e55d98) (PRJNA1007425)

Ancylostoma caninum strain Baltimore (PRJNA72585)

Ancylostoma duodenale strain Baltimore (PRJNA72581)

Ancylostoma ceylanicum strain HASH(0x3172748) (PRJNA231479)

Heligmosomoides polygyrus (PRJEB15396)

Nippostrongylus brasiliensis strain HASH(0x26b8b58) (PRJNA994163)

Haemonchus contortus (PRJEB506)

Haemonchus placei strain MHpl1 (PRJEB509)

Teladorsagia circumcincta (PRJNA72569)

Heterorhabditis bacteriophora strain M31e (PRJNA13977)

Bunonema sp. RGD898 (PRJNA655932)

Rhynchonema sp. JSB1_4 strain HASH(0x2bf7b90) (PRJNA953805)

Theristus sp. LFF4_11 strain HASH(0x3bf0af0) (PRJNA953805)

Sabatieria punctata strain HASH(0x2d80ae0) (PRJNA953805)

Linhomoeus sp. GSCO2_2 strain HASH(0x3fdfb90) (PRJNA953805)

Paralinhomoeus sp. GSCO2_6 strain HASH(0x27cc970) (PRJNA953805)

Plectus sambesii strain ES601 (PRJNA390260)

Microlaimidae sp. YZB2_3 strain HASH(0x2417920) (PRJNA953805)

Epsilonema sp. ZAB3_2 strain HASH(0x3d292b8) (PRJNA953805)

Ptycholaimellus sp. GST1_10 strain HASH(0x3758970) (PRJNA953805)

Drosophila melanogaster

Ixodes scapularis strain Wikel

Amphimedon queenslandica

Saccharomyces cerevisiae S288C

Schizosaccharomyces pombe 972h-