WormBase ParaSite HomeVersion: WBPS13 (WS269)

Comparative Genomics

For full details of The protein tree pipeline and the subsequent prediction of homologues, see the Ensembl Compara documentation.

This page provides a summary of the Ensembl phylogenetic analysis of protein families. The following views are available:

Overall Summary

Legend
Internal nodes (ancestral taxa) Node types Speciations Duplications Dubious nodes
Leaves (extant species) Gene tree coverage Genes in multi-species trees Genes in single-species trees Orphaned genes
Gene QC Validated genes Short genes Long genes Split genes
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-
Crassostrea gigas
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Capitella teleta
-----------------------------------------------------------------------
-
Drosophila melanogaster
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Ixodes scapularis strain Wikel
----------
-
Globodera rostochiensis strain Ro1 (PRJEB13504)
------------------------------
----
Globodera pallida strain Lindley (PRJEB123)
-----------------
Heterodera glycines (PRJNA381081)
-------------
-
Meloidogyne arenaria ASM369356v1 (PRJNA340324)
-------------
----
Meloidogyne arenaria ASM90000398v1 (PRJEB8714)
-------------
--------
Meloidogyne arenaria ASM313380v1 (PRJNA438575)
----------
-----------
-
Meloidogyne javanica ASM369362v1 (PRJNA340324)
----------------
----
Meloidogyne javanica ASM90000394v1 (PRJEB8714)
----------------------
-
Meloidogyne floridensis nMf_1_1 (PRJEB6016)
----------------
--------
----
Meloidogyne floridensis ASM369360v1 (PRJNA340324)
----------
-------------
-
Meloidogyne incognita Meloidogyne_incognita_V3 (PRJEB8714)
-------------------
-------
Meloidogyne incognita ASM369364v1 (PRJNA340324)
----------------
-----------------------
Meloidogyne enterolobii (PRJNA340324)
----------
------------------------------
Meloidogyne hapla strain VW9 (PRJNA29083)
-------------------------------------------
Meloidogyne graminicola (PRJNA411966)
------------------------------------------------
Ditylenchus destructor strain Dd01 (PRJNA312427)
----------
----------------------------------------
Bursaphelenchus xylophilus (PRJEA64437)
----------------
-
Steinernema feltiae (PRJNA204661)
----------------
----
Steinernema monticolum (PRJNA205067)
----------------
----
-
Steinernema scapterisci (PRJNA204942)
-------------------------------------
-------
Steinernema carpocapsae (PRJNA202318)
----------
---------------
Steinernema glaseri (PRJNA204943)
------------------------
-
Acrobeloides nanus (PRJEB26554)
----------------
Panagrellus redivivus (PRJNA186477)
----------------
-
Strongyloides ratti (PRJEB125)
----------------
----
Strongyloides stercoralis strain PV0001 (PRJEB528)
----------------
----
-
Strongyloides venezuelensis (PRJEB530)
-----------------------------------------
-------
Strongyloides papillosus strain LIN (PRJEB525)
------------------------
Parastrongyloides trichosuri strain KNP (PRJEB515)
----
----------------------
Rhabditophanes sp. KR3021 strain kr 3021 (PRJEB1297)
----------------
-
Pristionchus pacificus strain PS312 (PRJNA12644)
----------------
----
Pristionchus exspectatus (PRJEB24288)
----------------
--------
Pristionchus arcanus (PRJEB27334)
----------------
------------
Pristionchus maxplancki (PRJEB27334)
----------------
----------------
Pristionchus japonicus (PRJEB27334)
-------------
----
--------------------
Pristionchus mayeri (PRJEB27334)
-------------------
------------------------
Pristionchus entomophagus (PRJEB27334)
-------------------
----------------------------
Pristionchus fissidentatus (PRJEB27334)
---------------------------
--------------------------------
Parapristionchus giblindavisi (PRJEB27334)
------------------------------------------------------
Micoletzkya japonica (PRJEB27334)
----------------------
-
Angiostrongylus cantonensis strain Republic of China (PRJEB493)
----------------------------------
----
Angiostrongylus costaricensis strain Costa Rica (PRJEB494)
-------------------------
-
Dictyocaulus viviparus nDv.1.0 (PRJEB5116)
-------------------------
Dictyocaulus viviparus D_viviparus_9.2.1.ec.pg (PRJNA72587)
-------------------------
-
Heligmosomoides polygyrus nHp_v2.0 (PRJEB15396)
----------------------
--------
----
Heligmosomoides polygyrus strain Scotland/Edinburgh (PRJEB1203)
-----------------------------------
Nippostrongylus brasiliensis (PRJEB511)
----------------------------
----
-
Haemonchus contortus strain H. contortus Australian isolate (PRJNA205202)
----------------------------------
----
Haemonchus contortus HCON_V4 (PRJEB506)
-------------------------------
--------
Haemonchus placei strain MHpl1 (PRJEB509)
----------------
-------
------------
Teladorsagia circumcincta (PRJNA72569)
-------------------------
-
Cylicostephanus goldi strain England/Cheshire (PRJEB498)
-------------------------------
-------
----
Strongylus vulgaris strain USA/Kentucky (PRJEB531)
----------------------------
--------
Oesophagostomum dentatum strain OD-Hann (PRJNA72579)
-------------------------
------------
Necator americanus strain N. amaericanus Hunan isolate (PRJNA72135)
----------------------------
-
Ancylostoma caninum strain Baltimore (PRJNA72585)
-----------------------------
----
Ancylostoma duodenale strain Baltimore (PRJNA72581)
-------------------------
-
Ancylostoma ceylanicum strain HY135 (PRJNA231479)
-------------------------
Ancylostoma ceylanicum A_ceylanicum1.3.ec.cg.pg (PRJNA72583)
----------------------------------------------
Heterorhabditis bacteriophora strain M31e (PRJNA13977)
--------------------------------------
-
Caenorhabditis elegans strain N2 (PRJNA13758)
-------------------------
Caenorhabditis sp. 34 TK-2017 (PRJDB5687)
-------
-------
-------
-
Caenorhabditis briggsae (PRJNA10731)
----------------
--------
----
Caenorhabditis nigoni strain JU1422 (PRJNA384657)
-----------------------------
Caenorhabditis sinica (PRJNA194557)
----------
-------------
----
-
Caenorhabditis remanei CaeRem1.0 (PRJNA248911)
-------------------------------
----
Caenorhabditis remanei ASM164373v2 (PRJNA248909)
-------------------
----
----
--------
Caenorhabditis remanei C_remanei-15.0.1 (PRJNA53967)
------------------------------------
Caenorhabditis latens (PRJNA248912)
-------------------
-------------------
-
Caenorhabditis tropicalis (PRJNA53597)
----------------------------
Caenorhabditis brenneri (PRJNA20035)
-------------------
-------------------------------
Caenorhabditis japonica (PRJNA12591)
-----------------------------------------------------
Caenorhabditis angaria (PRJNA51225)
----------------
--------------------------------
-
Diploscapter coronatus strain PDL0010 (PRJDB3143)
-------------------
Diploscapter pachys strain PF1309 (PRJNA280107)
----------------------------------------------------
Oscheius tipulae (PRJEB15512)
------------------------
-
Toxocara canis strain PN_DK_2014 (PRJNA248777)
----------------
----
Toxocara canis strain Brazil/Equador (PRJEB533)
--------------------------
-
Parascaris univalens (PRJNA386823)
-------------------
----
Parascaris equorum (PRJEB514)
--------------------------------
-------
-
Ascaris suum ASM18702v3 (PRJNA62057)
----------------------
----
Ascaris suum strain A. suum Australian isolate (PRJNA80881)
--------------------------
Ascaris lumbricoides strain Republic of Ecuador (PRJEB4950)
-----------------------------------
Anisakis simplex (PRJEB496)
-----------------------
-
Onchocerca flexuosa strain Spain/Cordoba (PRJEB512)
----------
----------
----
Onchocerca flexuosa O_flexuosa_1.0.allpaths.pg.lrna (PRJNA230512)
----------------------------
-
Onchocerca ochengi nOo.2.0 (PRJEB1465)
--------------------------
----
----
Onchocerca ochengi strain Ngaoundere (PRJEB1204)
--------------------------------
Onchocerca volvulus strain O. volvulus Cameroon isolate (PRJEB513)
-------------------------------------
Dirofilaria immitis (PRJEB1797)
-------------------
----
----
-
Litomosoides sigmodontis strain Bain lab strain (PRJEB3075)
---------------------------------------
----
Acanthocheilonema viteae (PRJEB1697)
--------------------------------------
Elaeophora elaphi (PRJEB502)
----------------------------
------------
-
Loa loa LLoa-hgap-1 (PRJNA246086)
----------------------------------
Loa loa strain L. loa Cameroon isolate (PRJNA37757)
-------------------------
----
----
-
Brugia malayi strain FR3 (PRJNA10729)
------------------------
----------------
----
Brugia timori strain Flores island/ Indonesia (PRJEB4663)
----
-------------------------
--------
Brugia pahangi strain Scotland/Glasgow (PRJEB497)
-------------------------
-----------
-
Wuchereria bancrofti W_bancrofti_Jakarta_v2_0_4 (PRJEB536)
----------------------------------
Wuchereria bancrofti strain pt0022 (PRJNA275548)
----------------------
-------------------------------
Thelazia callipaeda strain Switzerland/Ticino (PRJEB1205)
-----------------------------------------------------
Gongylonema pulchrum strain Japan/Hokkaido (PRJEB505)
------------------------------------------------------
Dracunculus medinensis (PRJEB500)
-------------
-------------------------------------------
-
Enterobius vermicularis strain Spain/Canary Islands (PRJEB503)
----------------------
Syphacia muris strain Spain/Valencia (PRJEB524)
---------------------------------------------------------------------------
Plectus sambesii (PRJNA390260)
-------------------
-
Trichuris suis strain DCEP-RM93F (PRJNA208416)
-------------------
----
Trichuris suis strain DCEP-RM93M (PRJNA208415)
-------------------
--------
Trichuris suis T_suis_1.0.allpaths (PRJNA179528)
---------------------------
------------
Trichuris trichiura strain Republic of Ecuador (PRJEB535)
----------------------------------
Trichuris muris (PRJEB126)
----------------------
-
Trichinella spiralis strain ISS 195 (PRJNA12603)
------------------------------
----
Trichinella spiralis strain ISS3 (PRJNA257433)
-----------------------------
Trichinella nelsoni strain ISS37 (PRJNA257433)
-------------------
-------
-
Trichinella sp. T8 strain ISS272 (PRJNA257433)
-------------------------
----
----
Trichinella britovi strain ISS120 (PRJNA257433)
----------------------------------
-
Trichinella sp. T9 strain ISS409 (PRJNA257433)
-------------------------------
----
Trichinella murrelli strain ISS417 (PRJNA257433)
-------------------------------------
-
Trichinella nativa strain ISS10 (PRJNA257433)
-------------------
----
----
----
----
Trichinella nativa T_nativa_rf_gd (PRJNA179527)
-----------------------------------
Trichinella sp. T6 strain ISS34 (PRJNA257433)
----------------------------------------
Trichinella patagoniensis strain ISS2496 (PRJNA257433)
----------------------------------------
----------
-
Trichinella zimbabwensis strain ISS1029 (PRJNA257433)
----------------------------------
----
Trichinella papuae strain ISS1980 (PRJNA257433)
--------------------------
Trichinella pseudospiralis strain ISS13 (PRJNA257433)
-----------------------------------------------
Soboliphyme baturini strain Alaska/Dall Island (PRJEB516)
------------------------------------------------
Romanomermis culicivorax (PRJEB1358)
----------
----
-
Spirometra erinaceieuropaei (PRJEB1202)
-------------------------------------
----
Schistocephalus solidus strain NST_G2 (PRJEB527)
--------------------
Dibothriocephalus latus (PRJEB1206)
----------------
-
Taenia asiatica strain TASYD01 (PRJNA299871)
----------------
----
Taenia asiatica strain South Korea (PRJEB532)
----
-------------
--------
Taenia saginata strain TSAYD01 (PRJNA71493)
-------------------
------------
Taenia multiceps (PRJNA307624)
----------------
----
----------------
Taenia solium strain Mexico (PRJNA170813)
----------------------
--------------------
Hydatigera taeniaeformis strain Spain/Canary Islands (PRJEB534)
----------------------------
-
Echinococcus granulosus strain G1 (PRJNA182977)
-------------------------------------
----
Echinococcus granulosus strain G1 (PRJEB121)
----------------------
----
-
Echinococcus canadensis (PRJEB8992)
----------------------------
Echinococcus multilocularis strain Java (PRJEB122)
-------------------
-------
-
Hymenolepis nana strain Japan (PRJEB508)
--------------------------------------
----
Hymenolepis microstoma (PRJEB124)
--------------------------
Hymenolepis diminuta strain Denmark (PRJEB507)
-----------------------------------------------
Mesocestoides corti strain Specht & Voge 1965 (PRJEB510)
----------------
----
-
Schistosoma haematobium (PRJNA78265)
----------------------
----
Schistosoma curassoni strain Senegal/Dakar (PRJEB519)
----------------------
--------
Schistosoma mattheei strain Zambia/Denwood (PRJEB523)
----------------------
------------
Schistosoma margrebowiei strain Zambia (PRJEB522)
----------------------
------------
-
Schistosoma mansoni (PRJEA36577)
----------------------
-------
Schistosoma rodhaini strain Republic of Burundi (PRJEB526)
--------------------------------------------
Schistosoma japonicum strain China/Anhui (PRJEA34885)
----
-------------------
------------------------
Trichobilharzia regenti (PRJEB4662)
------------------------------------
-------------
-
Fasciola hepatica Fasciola_10x_pilon (PRJEB25283)
----------------------------
----
Fasciola hepatica F_hepatica_1.0.allpaths.pg (PRJNA179522)
-----------------------
----------------
--------
Echinostoma caproni strain Egypt (PRJEB1207)
-------------------------
-
Clonorchis sinensis ASM360417v1 (PRJNA386618)
----------------------
----
Clonorchis sinensis strain Henan (PRJDA72781)
--------------------------
Opisthorchis viverrini (PRJNA222628)
-------------------------------------------
-
Protopolystoma xenopodis (PRJEB1201)
-------------------
Gyrodactylus salaris strain Lier (PRJNA244375)
-------------------
-
Macrostomum lignano strain dv1 (PRJNA284736)
-
---------------------------------------------
----
Macrostomum lignano Mlig_3_7 (PRJNA371498)
--------------------
Schmidtea mediterranea strain S2F2 (PRJNA12585)
----------------
-
Rattus norvegicus
----------------
----
Mus musculus strain reference (CL57BL6)
----------------
--------
Homo sapiens
-------------------------------------------------------------------------
------------
Danio rerio
-------------------------
Ciona intestinalis
--------------------------------------------------------------------------------------
-
Nematostella vectensis strain CH2 x CH6
----------
Trichoplax adhaerens strain Grell-BS-1999
-------------------------------------------------------------------------------------------
Amphimedon queenslandica
----------------------------------------------------------------------------------------
-
Saccharomyces cerevisiae S288C
----
Schizosaccharomyces pombe 972h-