WormBase ParaSite HomeVersion: WBPS14 (WS271)

Comparative Genomics

For full details of The protein tree pipeline and the subsequent prediction of homologues, see the Ensembl Compara documentation.

This page provides a summary of the Ensembl phylogenetic analysis of protein families. The following views are available:

Overall Summary

Legend
Internal nodes (ancestral taxa) Node types Speciations Duplications Dubious nodes
Leaves (extant species) Gene tree coverage Genes in multi-species trees Genes in single-species trees Orphaned genes
Gene QC Validated genes Short genes Long genes Split genes
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Saccharomyces cerevisiae strain S288C
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Schizosaccharomyces pombe 972h-
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Ixodes scapularis strain Wikel
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Drosophila melanogaster
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Ancylostoma caninum strain Baltimore (PRJNA72585)
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Ancylostoma duodenale strain Baltimore (PRJNA72581)
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-
Ancylostoma ceylanicum A_ceylanicum1.3.ec.cg.pg (PRJNA72583)
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Ancylostoma ceylanicum strain HY135 (PRJNA231479)
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-
Strongylus vulgaris strain USA/Kentucky (PRJEB531)
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Cylicostephanus goldi strain England/Cheshire (PRJEB498)
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Oesophagostomum dentatum strain OD-Hann (PRJNA72579)
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Necator americanus strain N. amaericanus Hunan isolate (PRJNA72135)
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-
Haemonchus contortus (PRJEB506)
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Haemonchus placei strain MHpl1 (PRJEB509)
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Teladorsagia circumcincta (PRJNA72569)
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-
Nippostrongylus brasiliensis (PRJEB511)
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Heligmosomoides polygyrus (PRJEB15396)
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Dictyocaulus viviparus nDv.1.0 (PRJEB5116)
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Dictyocaulus viviparus D_viviparus_9.2.1.ec.pg (PRJNA72587)
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-
Angiostrongylus costaricensis strain Costa Rica (PRJEB494)
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Angiostrongylus cantonensis strain Republic of China (PRJEB493)
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Heterorhabditis bacteriophora strain M31e (PRJNA13977)
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-
Caenorhabditis sp. 34 TK-2017 (PRJDB5687)
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Caenorhabditis elegans strain N2 (PRJNA13758)
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Caenorhabditis nigoni strain JU1422 (PRJNA384657)
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Caenorhabditis briggsae (PRJNA10731)
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Caenorhabditis sinica (PRJNA194557)
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Caenorhabditis remanei CaeRem1.0 (PRJNA248911)
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Caenorhabditis remanei ASM164373v2 (PRJNA248909)
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----
----
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Caenorhabditis remanei C_remanei-15.0.1 (PRJNA53967)
---------------------------------
Caenorhabditis latens (PRJNA248912)
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Caenorhabditis brenneri (PRJNA20035)
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Caenorhabditis tropicalis (PRJNA53597)
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Caenorhabditis japonica (PRJNA12591)
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Caenorhabditis angaria (PRJNA51225)
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--------------------------------
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Diploscapter pachys strain PF1309 (PRJNA280107)
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Diploscapter coronatus strain PDL0010 (PRJDB3143)
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Oscheius tipulae (PRJEB15512)
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Mesorhabditis belari (PRJEB30104)
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Pristionchus pacificus strain PS312 (PRJNA12644)
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Pristionchus exspectatus (PRJEB24288)
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Pristionchus arcanus (PRJEB27334)
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Pristionchus maxplancki (PRJEB27334)
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Pristionchus japonicus (PRJEB27334)
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Pristionchus mayeri (PRJEB27334)
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Pristionchus entomophagus (PRJEB27334)
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Pristionchus fissidentatus (PRJEB27334)
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--------------------------------
Parapristionchus giblindavisi (PRJEB27334)
---------------------------------------------
Micoletzkya japonica (PRJEB27334)
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Globodera rostochiensis strain Ro1 (PRJEB13504)
---------------------------------
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Globodera pallida strain Lindley (PRJEB123)
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Heterodera glycines (PRJNA381081)
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Meloidogyne incognita ASM369364v1 (PRJNA340324)
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Meloidogyne incognita Meloidogyne_incognita_V3 (PRJEB8714)
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----------
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Meloidogyne floridensis ASM369360v1 (PRJNA340324)
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----
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Meloidogyne floridensis nMf_1_1 (PRJEB6016)
----------------------------
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Meloidogyne arenaria ASM369356v1 (PRJNA340324)
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Meloidogyne arenaria ASM90000398v1 (PRJEB8714)
----------------------
----
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Meloidogyne arenaria ASM313380v1 (PRJNA438575)
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Meloidogyne javanica ASM90000394v1 (PRJEB8714)
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Meloidogyne javanica ASM369362v1 (PRJNA340324)
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Meloidogyne enterolobii (PRJNA340324)
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Meloidogyne hapla strain VW9 (PRJNA29083)
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Meloidogyne graminicola (PRJNA411966)
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Ditylenchus destructor strain Dd01 (PRJNA312427)
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Ditylenchus dipsaci (PRJNA498219)
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----------------------------------------
Bursaphelenchus xylophilus (PRJEA64437)
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-
Steinernema monticolum (PRJNA205067)
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Steinernema feltiae (PRJNA204661)
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----
-
Steinernema scapterisci (PRJNA204942)
-------------------------------
Steinernema carpocapsae (PRJNA202318)
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Steinernema glaseri (PRJNA204943)
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Halicephalobus sp. WB-2010a (PRJNA528747)
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Panagrellus redivivus (PRJNA186477)
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Acrobeloides nanus (PRJEB26554)
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Strongyloides venezuelensis (PRJEB530)
----------------------
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Strongyloides papillosus strain LIN (PRJEB525)
----------------------
----
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Strongyloides ratti (PRJEB125)
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Strongyloides stercoralis strain PV0001 (PRJEB528)
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Parastrongyloides trichosuri strain KNP (PRJEB515)
-------------------------------
Rhabditophanes sp. KR3021 strain kr 3021 (PRJEB1297)
-------------------------------------------------------
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Syphacia muris strain Spain/Valencia (PRJEB524)
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Enterobius vermicularis strain Spain/Canary Islands (PRJEB503)
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-
Onchocerca ochengi strain Ngaoundere (PRJEB1204)
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Onchocerca ochengi nOo.2.0 (PRJEB1465)
----------------------
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Onchocerca volvulus strain O. volvulus Cameroon isolate (PRJEB513)
--------------------------
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Onchocerca flexuosa (PRJNA230512)
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Dirofilaria immitis (PRJEB1797)
----------------------
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Acanthocheilonema viteae (PRJEB1697)
------------------------------------
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Litomosoides sigmodontis strain Bain lab strain (PRJEB3075)
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Elaeophora elaphi (PRJEB502)
-------------------------------
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--------
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Wuchereria bancrofti strain pt0022 (PRJNA275548)
----------------------------
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Wuchereria bancrofti W_bancrofti_Jakarta_v2_0_4 (PRJEB536)
----------------------
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Brugia malayi strain FR3 (PRJNA10729)
----------------------------
----
----
Brugia timori strain Flores island/ Indonesia (PRJEB4663)
-----------------------------------
Brugia pahangi strain Scotland/Glasgow (PRJEB497)
----------------------
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Loa loa strain L. loa Cameroon isolate (PRJNA37757)
-------------------------------
Loa loa LLoa-hgap-1 (PRJNA246086)
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Thelazia callipaeda strain Switzerland/Ticino (PRJEB1205)
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Gongylonema pulchrum strain Japan/Hokkaido (PRJEB505)
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Dracunculus medinensis (PRJEB500)
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Ascaris suum ASM18702v3 (PRJNA62057)
----------------------
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Ascaris suum strain A. suum Australian isolate (PRJNA80881)
----------------------
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Ascaris lumbricoides strain Republic of Ecuador (PRJEB4950)
----------------------
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-
Parascaris equorum (PRJEB514)
-----------------------------------
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Parascaris univalens (PRJNA386823)
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Toxocara canis strain PN_DK_2014 (PRJNA248777)
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Anisakis simplex (PRJEB496)
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Plectus sambesii (PRJNA390260)
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Trichuris suis strain DCEP-RM93F (PRJNA208416)
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Trichuris suis strain DCEP-RM93M (PRJNA208415)
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Trichuris suis T_suis_1.0.allpaths (PRJNA179528)
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Trichuris trichiura strain Republic of Ecuador (PRJEB535)
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Trichuris muris (PRJEB126)
----------------------
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Trichinella sp. T8 strain ISS272 (PRJNA257433)
----------------------
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Trichinella britovi strain ISS120 (PRJNA257433)
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Trichinella murrelli strain ISS417 (PRJNA257433)
----------------------
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Trichinella sp. T9 strain ISS409 (PRJNA257433)
----------------------------------
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Trichinella nativa strain ISS10 (PRJNA257433)
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Trichinella nativa T_nativa_rf_gd (PRJNA179527)
--------------------------------------
Trichinella sp. T6 strain ISS34 (PRJNA257433)
----------------------------
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Trichinella patagoniensis strain ISS2496 (PRJNA257433)
----------------------
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Trichinella spiralis strain ISS 195 (PRJNA12603)
----------------------------
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Trichinella spiralis strain ISS3 (PRJNA257433)
-----------------------------------
Trichinella nelsoni strain ISS37 (PRJNA257433)
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Trichinella zimbabwensis strain ISS1029 (PRJNA257433)
-------------------------------------
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Trichinella papuae strain ISS1980 (PRJNA257433)
-----------------------------
Trichinella pseudospiralis strain ISS13 (PRJNA257433)
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Soboliphyme baturini strain Alaska/Dall Island (PRJEB516)
---------------------------------------------------
Romanomermis culicivorax (PRJEB1358)
-------------------
-
Spirometra erinaceieuropaei (PRJEB1202)
-------------
------------------------
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Schistocephalus solidus strain NST_G2 (PRJEB527)
-----------------------
Dibothriocephalus latus (PRJEB1206)
-------------------
-
Echinococcus multilocularis strain Java (PRJEB122)
---------------------------
----
Echinococcus canadensis (PRJEB8992)
----------------------
-
Echinococcus granulosus strain G1 (PRJEB121)
--------------------
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Echinococcus granulosus strain G1 (PRJNA182977)
----------------------
----
-
Taenia saginata strain TSAYD01 (PRJNA71493)
----------------------------
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Taenia asiatica strain TASYD01 (PRJNA299871)
----------------------------
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Taenia multiceps (PRJNA307624)
----------------------
----
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Taenia solium strain Mexico (PRJNA170813)
----------------------------------------
Hydatigera taeniaeformis strain Spain/Canary Islands (PRJEB534)
-------------------
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Hymenolepis microstoma (PRJEB124)
-------
----------------------------
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Hymenolepis nana strain Japan (PRJEB508)
-----------------------------
Hymenolepis diminuta strain Denmark (PRJEB507)
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Mesocestoides corti strain Specht & Voge 1965 (PRJEB510)
----------------------
-
Clonorchis sinensis strain Henan (PRJDA72781)
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----
----
Clonorchis sinensis ASM360417v1 (PRJNA386618)
-------------------------
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Opisthorchis viverrini (PRJNA222628)
-------------------------------------
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Opisthorchis felineus (PRJNA413383)
-------------------------------
-
Fasciola hepatica Fasciola_10x_pilon (PRJEB25283)
--------------------------------
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Fasciola hepatica F_hepatica_1.0.allpaths.pg (PRJNA179522)
--------------------------------
Echinostoma caproni strain Egypt (PRJEB1207)
----------------------------------------
-
Schistosoma rodhaini strain Republic of Burundi (PRJEB526)
-------------------------
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Schistosoma mansoni (PRJEA36577)
----------------------------------------
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----
-
Schistosoma curassoni strain Senegal/Dakar (PRJEB519)
----------------------------------
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Schistosoma bovis (PRJNA451066)
----------------------------
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Schistosoma haematobium (PRJNA78265)
-------
-------------
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Schistosoma mattheei strain Zambia/Denwood (PRJEB523)
-------------------------
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Schistosoma margrebowiei strain Zambia (PRJEB522)
------------------------------------------------
Schistosoma japonicum strain China/Anhui (PRJEA34885)
-------------------------------------------------
Trichobilharzia regenti (PRJEB4662)
--------------------------------------------------
-
Gyrodactylus salaris strain Lier (PRJNA244375)
----------------------
Protopolystoma xenopodis (PRJEB1201)
-------------------------------------------------------
-
Macrostomum lignano (PRJNA371498)
-------------------
Schmidtea mediterranea (PRJNA379262)
----
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Capitella teleta
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Crassostrea gigas
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-
Rattus norvegicus
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Mus musculus strain reference (CL57BL6)
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Homo sapiens
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Danio rerio
----------------------
Ciona intestinalis
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Trichoplax adhaerens strain Grell-BS-1999
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Nematostella vectensis strain CH2 x CH6
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Amphimedon queenslandica