Comparative Genomics

For full details of The protein tree pipeline and the subsequent prediction of homologues, see the Ensembl Compara documentation.

• Overview
• Gene tree coverage and Gene QC for each species
• Size of gene trees (split by their root taxon)
• Gene tree nodes, and the inference of speciation / duplication events

Overall Summary

Legend
Internal nodes (ancestral taxa)	Node types	Speciations	Duplications	Dubious nodes
Leaves (extant species)	Gene tree coverage	Genes in multi-species trees	Genes in single-species trees	Orphaned genes
	Gene QC	Validated genes	Short genes	Long genes	Split genes

Rattus norvegicus strain BN/NHsdMcwi

Mus musculus reference (CL57BL6) strain

Homo sapiens

Danio rerio

Ciona intestinalis

Ixodes scapularis strain Wikel

Drosophila melanogaster

Trichinella nelsoni strain ISS37 (PRJNA257433)

Trichinella spiralis strain ISS 195 (PRJNA12603)

Trichinella murrelli strain ISS417 (PRJNA257433)

Trichinella sp. T9 strain ISS409 (PRJNA257433)

Trichinella britovi strain ISS120 (PRJNA257433)

Trichinella sp. T8 strain ISS272 (PRJNA257433)

Trichinella nativa strain ISS10 (PRJNA257433)

Trichinella sp. T6 strain ISS34 (PRJNA257433)

Trichinella patagoniensis strain ISS2496 (PRJNA257433)

Trichinella papuae strain ISS1980 (PRJNA257433)

Trichinella zimbabwensis strain ISS1029 (PRJNA257433)

Trichinella pseudospiralis strain ISS13 (PRJNA257433)

Trichuris trichiura strain Republic of Ecuador (PRJEB535)

Trichuris suis (PRJNA179528)

Trichuris muris (PRJEB126)

Soboliphyme baturini strain Alaska/Dall Island (PRJEB516)

Mesodorylaimus sp. YZB2_4 strain HASH(0x248fae0) (PRJNA953805)

Romanomermis culicivorax (PRJEB1358)

Epsilonema sp. ZAB3_2 strain HASH(0x3d292b8) (PRJNA953805)

Microlaimidae sp. YZB2_3 strain HASH(0x2417920) (PRJNA953805)

Ptycholaimellus sp. GST1_10 strain HASH(0x3758970) (PRJNA953805)

Linhomoeus sp. GSCO2_2 strain HASH(0x3fdfb90) (PRJNA953805)

Paralinhomoeus sp. GSCO2_6 strain HASH(0x27cc970) (PRJNA953805)

Plectus sambesii strain ES601 (PRJNA390260)

Theristus sp. LFF4_11 strain HASH(0x3bf0af0) (PRJNA953805)

Rhynchonema sp. JSB1_4 strain HASH(0x2bf7b90) (PRJNA953805)

Sabatieria punctata strain HASH(0x2d80ae0) (PRJNA953805)

Enterobius vermicularis strain Spain/Canary Islands (PRJEB503)

Syphacia muris strain Spain/Valencia (PRJEB524)

Onchocerca volvulus strain O. volvulus Cameroon isolate (PRJEB513)

Onchocerca ochengi strain Ngaoundere (PRJEB1204)

Onchocerca flexuosa strain Red Deer (PRJNA230512)

Dirofilaria immitis (PRJEB1797)

Acanthocheilonema viteae (PRJEB1697)

Cercopithifilaria johnstoni (PRJEB47283)

Litomosoides sigmodontis strain Bain lab strain (PRJEB3075)

Elaeophora elaphi (PRJEB502)

Brugia malayi strain FR3 (PRJNA10729)

Brugia timori strain Flores island/ Indonesia (PRJEB4663)

Brugia pahangi strain Scotland/Glasgow (PRJEB497)

Wuchereria bancrofti strain 17-3 (PRJNA275548)

Loa loa strain CAT (PRJNA246086)

Thelazia callipaeda strain Switzerland/Ticino (PRJEB1205)

Gongylonema pulchrum strain Japan/Hokkaido (PRJEB505)

Dracunculus medinensis (PRJEB500)

Setaria digitata strain RSCHEM2018 (PRJNA479729)

Parascaris univalens strain PG01 (PRJNA386823)

Parascaris equorum (PRJEB514)

Ascaris suum strain AG01 (PRJNA62057)

Ascaris lumbricoides strain Republic of Ecuador (PRJEB4950)

Toxocara canis strain PN_DK_2014 (PRJNA248777)

Anisakis simplex (PRJEB496)

Enoplolaimus lenunculus strain HASH(0x26313f8) (PRJNA953805)

Trileptium ribeirensis strain HASH(0x26e2a80) (PRJNA953805)

Trissonchulus sp. WLG1_4 strain HASH(0x3ccc910) (PRJNA953805)

Trissonchulus latispiculum strain HASH(0x3ac59f0) (PRJNA953805)

Ditylenchus destructor strain Dd01 (PRJNA312427)

Ditylenchus dipsaci strain pooled J2 (PRJNA498219)

Meloidogyne javanica strain VW4 (PRJNA340324)

Meloidogyne arenaria strain A2-O Okinawa_01 (PRJNA438575)

Meloidogyne incognita (PRJEB8714)

Meloidogyne floridensis strain SJF1 (PRJNA340324)

Meloidogyne enterolobii strain Swiss

Meloidogyne hapla strain VW9 (PRJNA29083)

Meloidogyne graminicola (PRJNA411966)

Meloidogyne chitwoodi strain Race1 (PRJNA666745)

Heterodera schachtii strain Bonn (PRJNA522950)

Heterodera glycines strain TN10 (PRJNA381081)

Globodera pallida strain D383 (PRJNA764088)

Globodera pallida strain Lindley (PRJEB123)

Globodera rostochiensis strain Ro1 (PRJEB13504)

Bradynema listronoti strain AAFC-BrLi-01_J3_LR_R9 (PRJNA842945)

Bursaphelenchus xylophilus ASM23113v1_submitted (PRJEA64437)

Bursaphelenchus xylophilus strain Ka4C1 (PRJEB40022)

Bursaphelenchus okinawaensis strain SH1 (PRJEB40023)

Aphelenchoides fujianensis strain Dali (PRJNA834627)

Aphelenchoides besseyi strain APVT (PRJNA834627)

Aphelenchoides bicaudatus strain Fsh (PRJNA834627)

Panagrolaimus superbus (PRJEB32708)

Panagrolaimus sp. ES5 (PRJEB32708)

Panagrolaimus davidi (PRJEB32708)

Panagrolaimus sp. PS1159 (PRJEB32708)

Panagrolaimus sp. JU765 (PRJEB32708)

Halicephalobus sp. NKZ332 (PRJNA555616)

Halicephalobus mephisto strain m2B (PRJNA528747)

Panagrellus redivivus (PRJNA186477)

Acrobeloides nanus (PRJEB26554)

Strongyloides ratti (PRJEB125)

Strongyloides stercoralis strain PV001 (PRJNA930454)

Strongyloides venezuelensis (PRJEB530)

Strongyloides papillosus strain LIN (PRJEB525)

Parastrongyloides trichosuri strain KNP (PRJEB515)

Rhabditophanes sp. KR3021 strain kr 3021 (PRJEB1297)

Steinernema carpocapsae (PRJNA202318)

Steinernema scapterisci (PRJNA204942)

Steinernema feltiae strain NW (PRJNA353610)

Steinernema monticolum (PRJNA205067)

Steinernema glaseri (PRJNA204943)

Steinernema hermaphroditum strain PS9179 (PRJNA982879)

Ancylostoma duodenale strain Baltimore (PRJNA72581)

Ancylostoma caninum strain Baltimore (PRJNA72585)

Ancylostoma ceylanicum strain HASH(0x3172748) (PRJNA231479)

Cylicocyclus nassatus strain Nouzilly (PRJEB63274)

Cylicostephanus goldi strain England/Cheshire (PRJEB498)

Strongylus vulgaris strain USA/Kentucky (PRJEB531)

Oesophagostomum dentatum strain OD-Hann (PRJNA72579)

Parelaphostrongylus tenuis strain MNPRO001-30 (PRJNA729714)

Necator americanus strain HASH(0x2e55d98) (PRJNA1007425)

Heligmosomoides polygyrus (PRJEB15396)

Nippostrongylus brasiliensis strain HASH(0x26b8b58) (PRJNA994163)

Haemonchus placei strain MHpl1 (PRJEB509)

Haemonchus contortus (PRJEB506)

Teladorsagia circumcincta (PRJNA72569)

Angiostrongylus vasorum strain ZH-2019-22 (PRJNA663250)

Angiostrongylus costaricensis strain Costa Rica (PRJEB494)

Angiostrongylus cantonensis strain Guangzhou (PRJNA350391)

Dictyocaulus viviparus (PRJNA72587)

Heterorhabditis bacteriophora strain M31e (PRJNA13977)

Diploscapter pachys strain PF1309 (PRJNA280107)

Diploscapter coronatus strain PDL0010 (PRJDB3143)

Caenorhabditis quiockensis strain JU2809 (PRJEB11354)

Caenorhabditis angaria (PRJNA51225)

Caenorhabditis waitukubuli strain NIC564 (PRJEB12602)

Caenorhabditis panamensis (PRJEB28259)

Caenorhabditis becei strain QG2083 (PRJEB28243)

Caenorhabditis sulstoni strain JU2788 (PRJEB12601)

Caenorhabditis japonica (PRJNA12591)

Caenorhabditis inopinata (PRJDB5687)

Caenorhabditis elegans strain N2 (PRJNA13758)

Caenorhabditis brenneri (PRJNA20035)

Caenorhabditis tropicalis (PRJNA53597)

Caenorhabditis tribulationis strain JU2818 (PRJEB12608)

Caenorhabditis zanzibari strain JU2190 (PRJEB12596)

Caenorhabditis sinica (PRJNA194557)

Caenorhabditis nigoni strain JU1422 (PRJNA384657)

Caenorhabditis briggsae (PRJNA10731)

Caenorhabditis remanei C_remanei-15.0.1 (PRJNA53967)

Caenorhabditis remanei strain PX506 (PRJNA577507)

Caenorhabditis latens (PRJNA248912)

Caenorhabditis uteleia strain JU2585 (PRJEB12600)

Caenorhabditis bovis (PRJEB34497)

Caenorhabditis auriculariae strain NKZ352 (PRJEB40642)

Caenorhabditis parvicauda (PRJEB12595)

Oscheius tipulae strain CEW1 (PRJNA644888)

Oscheius tipulae Oscheius_tipulae_assembly_v2 (PRJEB15512)

Auanema sp. JU1783 strain HASH(0x208d358) (PRJEB51845)

Mesorhabditis spiculigera strain AF72 (PRJEB59059)

Mesorhabditis belari strain JU2817 (PRJEB61636)

Allodiplogaster sudhausi strain HASH(0x2b14c20) (PRJEB48369)

Diplogasteroides magnus strain TMG144 (PRJNA655932)

Koerneria luziae strain NKZ323 (PRJNA655932)

Levipalatum texanum strain TMG5 (PRJNA655932)

Pristionchus exspectatus (PRJEB46690)

Pristionchus pacificus strain PS312 (PRJNA12644)

Pristionchus arcanus (PRJEB27334)

Pristionchus maxplancki (PRJEB27334)

Pristionchus japonicus (PRJEB27334)

Pristionchus mayeri (PRJEB27334)

Pristionchus entomophagus (PRJEB27334)

Pristionchus fissidentatus (PRJEB27334)

Parapristionchus giblindavisi (PRJEB53331)

Micoletzkya japonica (PRJEB27334)

Bunonema sp. RGD898 (PRJNA655932)

Echinococcus granulosus strain EgG1s_protoscolex (PRJNA754835)

Echinococcus granulosus strain G1 (PRJEB121)

Echinococcus multilocularis strain Java (PRJEB122)

Echinococcus canadensis (PRJEB8992)

Echinococcus oligarthrus strain DaMi1 (PRJEB31222)

Taenia asiatica strain TASYD01 (PRJNA299871)

Taenia saginata strain TSAYD01 (PRJNA71493)

Taenia multiceps strain Gns01 (PRJNA307624)

Taenia solium strain Mexico (PRJNA170813)

Hydatigera taeniaeformis strain Spain/Canary Islands (PRJEB534)

Hymenolepis microstoma (PRJEB124)

Rodentolepis nana strain Japan (PRJEB508)

Hymenolepis diminuta strain laboratory inbred isolate (PRJEB30942)

Mesocestoides corti strain Specht & Voge 1965 (PRJEB510)

Schistocephalus solidus strain NST_G2 (PRJEB527)

Spirometra erinaceieuropaei (PRJEB1202)

Dibothriocephalus latus (PRJEB1206)

Gyrodactylus salaris strain Lier (PRJNA244375)

Gyrodactylus bullatarudis strain Rox2016 (PRJNA532341)

Protopolystoma xenopodis (PRJEB1201)

Schistosoma rodhaini strain tdSchRodh1.1 (PRJEB44434)

Schistosoma mansoni (PRJEA36577)

Schistosoma spindale strain tdSchSpin1.1 (PRJEB44434)

Schistosoma margrebowiei strain tdSchMarg1.1 (PRJEB44434)

Schistosoma bovis strain tdSchBovi1.1 (PRJEB44434)

Schistosoma curassoni strain tdSchCurr1.1 (PRJEB44434)

Schistosoma guineensis strain tdSchGuin1.1 (PRJEB44434)

Schistosoma haematobium (PRJNA78265)

Schistosoma intercalatum strain tdSchInte1.1 (PRJEB44434)

Schistosoma mattheei strain tdSchMatt1.1 (PRJEB44434)

Schistosoma turkestanicum strain tdSchTurk1.1 (PRJEB44434)

Schistosoma japonicum strain F4M4 (PRJNA724792)

Trichobilharzia regenti strain tdTriRege1.1 (PRJEB44434)

Trichobilharzia szidati strain tdTriSzid1.1 (PRJEB44434)

Heterobilharzia americana strain tdHetHame1.1 (PRJEB44434)

Opisthorchis viverrini (PRJNA222628)

Opisthorchis felineus strain AK-0245 (PRJNA413383)

Clonorchis sinensis strain Cs-k2 (PRJNA386618)

Paragonimus skrjabini miyazakii strain HASH(0x3fae100) (PRJNA245325)

Paragonimus heterotremus strain HASH(0x251c900) (PRJNA284523)

Paragonimus kellicotti strain Missouri (PRJNA179523)

Paragonimus westermani (PRJNA454344)

Atriophallophorus winterbourni strain NZ2018 (PRJNA636673)

Fasciola hepatica F_hepatica_1.0.allpaths.pg (PRJNA179522)

Fasciola hepatica strain S (PRJEB58756)

Fasciola gigantica strain Uganda_cow_1 (PRJNA230515)

Fasciolopsis buski strain HT (PRJNA284521)

Echinostoma caproni strain Egypt (PRJEB1207)

Dicrocoelium dendriticum strain tdDicDend1.1 (PRJEB44434)

Schmidtea mediterranea strain S2F19 (PRJNA885486)

Macrostomum lignano strain DV1 (PRJNA371498)

Capitella teleta

Crassostrea gigas

Trichoplax adhaerens strain Grell-BS-1999

Nematostella vectensis strain CH2 x CH6

Amphimedon queenslandica

Saccharomyces cerevisiae S288C

Schizosaccharomyces pombe 972h-