WormBase ParaSite HomeVersion: WBPS15 (WS276)

Comparative Genomics

For full details of The protein tree pipeline and the subsequent prediction of homologues, see the Ensembl Compara documentation.

This page provides a summary of the Ensembl phylogenetic analysis of protein families. The following views are available:

Overall Summary

Legend
Internal nodes (ancestral taxa) Node types Speciations Duplications Dubious nodes
Leaves (extant species) Gene tree coverage Genes in multi-species trees Genes in single-species trees Orphaned genes
Gene QC Validated genes Short genes Long genes Split genes
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-
Trichoplax adhaerens strain Grell-BS-1999
-------
Nematostella vectensis strain CH2 x CH6
-------------------------------------------------------------------------------------------
-
Capitella teleta
----------
Crassostrea gigas
----------
-
Ascaris suum strain AG01 (PRJNA62057)
----------
----
Ascaris suum strain A. suum Australian isolate (PRJNA80881)
----------
--------
Ascaris lumbricoides strain Republic of Ecuador (PRJEB4950)
----------
--------
-
Parascaris univalens strain PG01 (PRJNA386823)
------------------------------
-------
Parascaris equorum (PRJEB514)
----------------------------
Toxocara canis strain PN_DK_2014 (PRJNA248777)
-----------------------------
Anisakis simplex (PRJEB496)
-------------
-
Acanthocheilonema viteae (PRJEB1697)
---------------------
----
Litomosoides sigmodontis strain Bain lab strain (PRJEB3075)
--------------------
Elaeophora elaphi (PRJEB502)
-------------
----
-
Brugia malayi strain FR3 (PRJNA10729)
-------------------
----
Brugia timori strain Flores island/ Indonesia (PRJEB4663)
-------------------
--------
Brugia pahangi strain Scotland/Glasgow (PRJEB497)
----------
-------
--------
-
Wuchereria bancrofti strain pt0022 (PRJNA275548)
----------------------
Wuchereria bancrofti W_bancrofti_Jakarta_v2_0_4 (PRJEB536)
----------------
------------
-
Loa loa strain CAT (PRJNA246086)
----------------------
Loa loa strain L. loa Cameroon isolate (PRJNA37757)
----------------------
-
Onchocerca ochengi nOo.2.0 (PRJEB1465)
----------------
-------
----
Onchocerca ochengi strain Ngaoundere (PRJEB1204)
------------------------------
----------------
--------
Onchocerca volvulus strain O. volvulus Cameroon isolate (PRJEB513)
-------------------
-----------
------------
Onchocerca flexuosa strain Red Deer (PRJNA230512)
----------------------------------------
Dirofilaria immitis (PRJEB1797)
-------------------
-------------------------------
Thelazia callipaeda strain Switzerland/Ticino (PRJEB1205)
----------------
-----------------------------------
Gongylonema pulchrum strain Japan/Hokkaido (PRJEB505)
---------------------------------------------------
Dracunculus medinensis (PRJEB500)
----------------------------------------------------
Setaria digitata strain RSCHEM2018 (PRJNA479729)
-----------------------------------------------------
-
Enterobius vermicularis strain Spain/Canary Islands (PRJEB503)
-------------
Syphacia muris strain Spain/Valencia (PRJEB524)
-------------
-
Steinernema carpocapsae ASM75764v3 (PRJNA202318)
-------------
----
Steinernema carpocapsae S_carpo_v1_submitted (PRJNA202318)
-------------
--------
Steinernema scapterisci (PRJNA204942)
-------------------
-
Steinernema feltiae strain NW (PRJNA353610)
---------------------------------------------
----
----
Steinernema feltiae S_felt_v1_submitted (PRJNA204661)
-----------------------
Steinernema monticolum (PRJNA205067)
----------------------------
Steinernema glaseri (PRJNA204943)
----------------
-
Strongyloides ratti (PRJEB125)
----------------
----
Strongyloides stercoralis strain PV0001 (PRJEB528)
----------------
----
-
Strongyloides papillosus strain LIN (PRJEB525)
--------------------------------------------
-------
Strongyloides venezuelensis (PRJEB530)
-------------------------
------------------
Parastrongyloides trichosuri strain KNP (PRJEB515)
----------------------------------
Rhabditophanes sp. KR3021 strain kr 3021 (PRJEB1297)
----------
-------------
-
Panagrolaimus sp. PS1159 (PRJEB32708)
-------------------------
----
Panagrolaimus davidi (PRJEB32708)
-------------------------
----
-
Panagrolaimus superbus (PRJEB32708)
-------------------------------
Panagrolaimus sp. ES5 (PRJEB32708)
-------------------------
--------
-
Panagrellus redivivus (PRJNA186477)
-------------------
------------------------
-------
Halicephalobus sp. WB-2010a (PRJNA528747)
----------------------------------------
Panagrolaimus sp. JU765 (PRJEB32708)
-----------------------------------------
Acrobeloides nanus (PRJEB26554)
-----------------------------
-
Meloidogyne javanica strain VW4 (PRJNA340324)
-------------------------
----
Meloidogyne javanica ASM90000394v1 (PRJEB8714)
-------------------------------
-
Meloidogyne arenaria strain HarA (PRJNA340324)
-------------------------
----
----
Meloidogyne arenaria ASM90000398v1 (PRJEB8714)
-----------------------------------
Meloidogyne arenaria strain A2-O Okinawa_01 (PRJNA438575)
-------------------------------
-
Meloidogyne floridensis nMf_1_1 (PRJEB6016)
-------------------
----
--------
----
Meloidogyne floridensis strain SJF1 (PRJNA340324)
----------------------------
-
Meloidogyne incognita strain W1 (PRJNA340324)
----------------------
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Meloidogyne incognita Meloidogyne_incognita_V3 (PRJEB8714)
----------------------
-----------------------
Meloidogyne enterolobii strain L30 (PRJNA340324)
------------------------------------------------
Meloidogyne hapla strain VW9 (PRJNA29083)
----------------------
----------------------------
Meloidogyne graminicola (PRJNA411966)
----------------------------
-
Globodera rostochiensis strain Ro1 (PRJEB13504)
----------------------
------------------------
----
Globodera pallida strain Lindley (PRJEB123)
--------------------------------
Heterodera glycines strain TN10 (PRJNA381081)
-------------
----
--------------------------------
-
Ditylenchus dipsaci strain pooled J2 (PRJNA498219)
----
----------------
Ditylenchus destructor strain Dd01 (PRJNA312427)
-------------------------------------------------------
Bursaphelenchus xylophilus (PRJEA64437)
-------------------
-
Pristionchus exspectatus (PRJEB24288)
-------------------
----
Pristionchus pacificus strain PS312 (PRJNA12644)
-------------------
--------
Pristionchus arcanus (PRJEB27334)
-------------------
------------
Pristionchus maxplancki (PRJEB27334)
-------------------
----------------
Pristionchus japonicus (PRJEB27334)
-------------------
--------------------
Pristionchus mayeri (PRJEB27334)
-------------------
------------------------
Pristionchus entomophagus (PRJEB27334)
-------------------
----------------------------
Pristionchus fissidentatus (PRJEB27334)
-------------------------------------------
--------------------------------
Parapristionchus giblindavisi (PRJEB27334)
------------------------------------------------------
Micoletzkya japonica (PRJEB27334)
----------------------
-
Angiostrongylus cantonensis strain Republic of China (PRJEB493)
----------------------
----
Angiostrongylus cantonensis strain Guangzhou (PRJNA350391)
----------
---------------------
--------
Angiostrongylus costaricensis strain Costa Rica (PRJEB494)
--------------------------------
-
Dictyocaulus viviparus nDv.1.0 (PRJEB5116)
----------------------------
Dictyocaulus viviparus D_viviparus_9.2.1.ec.pg (PRJNA72587)
----------------
-------------
-
Cylicostephanus goldi strain England/Cheshire (PRJEB498)
----------------------------
----
----
Strongylus vulgaris strain USA/Kentucky (PRJEB531)
----------------------------------
--------
Oesophagostomum dentatum strain OD-Hann (PRJNA72579)
----------------------------------
------------
Necator americanus strain N. amaericanus Hunan isolate (PRJNA72135)
----------------------------------------
-
Ancylostoma caninum strain Baltimore (PRJNA72585)
-----------------------------------------
----
Ancylostoma duodenale strain Baltimore (PRJNA72581)
-------------------------------
----
-
Ancylostoma ceylanicum A_ceylanicum1.3.ec.cg.pg (PRJNA72583)
----------------------
--------------------------------
-------
Ancylostoma ceylanicum strain HY135 (PRJNA231479)
----------------------------------
-
Haemonchus placei strain MHpl1 (PRJEB509)
----------------------------------
----
Haemonchus contortus (PRJEB506)
-----------------------------------
--------
Teladorsagia circumcincta (PRJNA72569)
-----------------------------------
-
Nippostrongylus brasiliensis (PRJEB511)
-------------------------------
Heligmosomoides polygyrus (PRJEB15396)
----------------------------------------------------
Heterorhabditis bacteriophora strain M31e (PRJNA13977)
--------------------------------------------------------------------
-
Diploscapter pachys strain PF1309 (PRJNA280107)
-------------------------------
Diploscapter coronatus strain PDL0010 (PRJDB3143)
-----------------------------------------------------------
-
Caenorhabditis sp. 38 MB-2015 strain JU2809 (PRJEB11354)
----------------------------------
Caenorhabditis angaria (PRJNA51225)
----------------------------------
-
Caenorhabditis panamensis (PRJEB28259)
----------------------------------
----
Caenorhabditis sp. 39 LS-2015 strain NIC564 (PRJEB12602)
----------------------------------
--------
Caenorhabditis becei strain QG2083 (PRJEB28243)
----------------------
------------------
------------
Caenorhabditis sp. 32 LS-2015 strain JU2788 (PRJEB12601)
----------------------------------------------
Caenorhabditis japonica (PRJNA12591)
----------------------------
-------
-
Caenorhabditis remanei CaeRem1.0 (PRJNA248911)
-------------------------
-------------
----
Caenorhabditis remanei ASM164373v2 (PRJNA248909)
----------------------------------------
--------
Caenorhabditis remanei C_remanei-15.0.1 (PRJNA53967)
-------------------------------------
----
------------
Caenorhabditis latens (PRJNA248912)
-----------------------------------------------------
-
Caenorhabditis briggsae (PRJNA10731)
----------------------------------------------
----
Caenorhabditis nigoni strain JU1422 (PRJNA384657)
----------------
----------------------------
-------
-
Caenorhabditis sp. 40 LS-2015 strain JU2818 (PRJEB12608)
----------------------------------
-------------------
----
Caenorhabditis sp. 26 LS-2015 strain JU2190 (PRJEB12596)
----------------------------
-------------
----
-----------
Caenorhabditis sinica (PRJNA194557)
-------------------------------------------------------------
-
Caenorhabditis brenneri (PRJNA20035)
-------------------------------------------------
Caenorhabditis tropicalis (PRJNA53597)
----------------------------------
--------------------------
-
Caenorhabditis elegans strain N2 (PRJNA13758)
-------------------------
----------------
Caenorhabditis inopinata (PRJDB5687)
-----------------------------------------------------------------
Caenorhabditis sp. 31 LS-2015 strain JU2585 (PRJEB12600)
----------------------------------------------------------------------
Caenorhabditis bovis (PRJEB34497)
-----------------------------------------------------------------------
Caenorhabditis sp. 21 LS-2015 (PRJEB12595)
----------------------------------------------------------------------------
Oscheius tipulae (PRJEB15512)
-----------------------------------------------------------------------------
Mesorhabditis belari (PRJEB30104)
----------------------------------------------------------------------------------------------
Plectus sambesii strain ES601 (PRJNA390260)
----------------------
-
Trichuris suis strain DCEP-RM93F (PRJNA208416)
----------------------
----
Trichuris suis strain DCEP-RM93M (PRJNA208415)
----------------------
--------
Trichuris suis T_suis_1.0.allpaths (PRJNA179528)
------------------------------
------------
Trichuris trichiura strain Republic of Ecuador (PRJEB535)
-------------------------------------
Trichuris muris (PRJEB126)
----
----------------------
-
Trichinella sp. T8 strain ISS272 (PRJNA257433)
----------------------------
----
Trichinella britovi strain ISS120 (PRJNA257433)
-------------------------------
-
Trichinella murrelli strain ISS417 (PRJNA257433)
-------------------------
----
----
Trichinella sp. T9 strain ISS409 (PRJNA257433)
-------------------------------------
-
Trichinella nativa strain ISS10 (PRJNA257433)
-------------------
-------------
----
----
Trichinella nativa T_nativa_rf_gd (PRJNA179527)
----------
--------------------------------
Trichinella sp. T6 strain ISS34 (PRJNA257433)
-------------------------------
----------------
Trichinella patagoniensis strain ISS2496 (PRJNA257433)
-------------------------
-------------
-
Trichinella spiralis strain ISS 195 (PRJNA12603)
-------------------------------
------------
----
Trichinella spiralis strain ISS3 (PRJNA257433)
--------------------------------------
Trichinella nelsoni strain ISS37 (PRJNA257433)
--------------------------------------------------------------
----------
-
Trichinella papuae strain ISS1980 (PRJNA257433)
----------------------------------------
----
Trichinella zimbabwensis strain ISS1029 (PRJNA257433)
--------------------------------
Trichinella pseudospiralis strain ISS13 (PRJNA257433)
-----------------------------------------------------
Soboliphyme baturini strain Alaska/Dall Island (PRJEB516)
------------------------------------------------------
Romanomermis culicivorax (PRJEB1358)
----------------------------------------------------------
-
Macrostomum lignano strain DV1 (PRJNA371498)
-------------------------
Schmidtea mediterranea (PRJNA379262)
-------------------------
-
Fasciola hepatica F_hepatica_1.0.allpaths.pg (PRJNA179522)
-------------------------
----
Fasciola hepatica Fasciola_10x_pilon (PRJEB25283)
-------------------------
--------
Fasciola gigantica strain Uganda_cow_1 (PRJNA230515)
------------------------------------
Echinostoma caproni strain Egypt (PRJEB1207)
-------------------------------------
----
-
Opisthorchis felineus strain AK-0245 (PRJNA413383)
-------------------------------
----
Opisthorchis viverrini (PRJNA222628)
----------------------------
----
-
Clonorchis sinensis strain Henan (PRJDA72781)
-------------------------------
Clonorchis sinensis strain Cs-k2 (PRJNA386618)
------------------------------------
Paragonimus westermani (PRJNA454344)
-------------------------
--------------------
-
Schistosoma japonicum strain China/Anhui (PRJEA34885)
-------------------------------------------------------
-------------
Schistosoma japonicum strain HuSjv2 (PRJNA520774)
-------------------------------
-
Schistosoma curassoni strain Senegal/Dakar (PRJEB519)
----------------------------
----
----
Schistosoma bovis (PRJNA451066)
-------------
-------------------
--------
Schistosoma haematobium (PRJNA78265)
-
----------------
-------------
------------
Schistosoma mattheei strain Zambia/Denwood (PRJEB523)
-------------------------
----
----------------
Schistosoma margrebowiei strain Zambia (PRJEB522)
----------------------------------------
-
Schistosoma mansoni (PRJEA36577)
----------------------------
Schistosoma rodhaini strain Republic of Burundi (PRJEB526)
-------------------------------------------------
Trichobilharzia regenti (PRJEB4662)
--------------------------------------------------
-
Gyrodactylus salaris strain Lier (PRJNA244375)
----------------------
Protopolystoma xenopodis (PRJEB1201)
----------------------
-
Hymenolepis diminuta strain Denmark (PRJEB507)
----------------------------------
----
Hymenolepis diminuta strain laboratory inbred isolate (PRJEB30942)
----------------
-------
-
Rodentolepis nana strain Japan (PRJEB508)
----------------------
Hymenolepis microstoma (PRJEB124)
----------------------
-
Taenia saginata strain TSAYD01 (PRJNA71493)
-------------------
----
----
Taenia asiatica strain TASYD01 (PRJNA299871)
-------------------------
--------
Taenia multiceps strain Gns01 (PRJNA307624)
-------------------------
------------
Taenia solium strain Mexico (PRJNA170813)
----------------------------------------
Hydatigera taeniaeformis strain Spain/Canary Islands (PRJEB534)
-------------------
----
----
-
Echinococcus granulosus strain G1 (PRJEB121)
----------------------------
----
Echinococcus granulosus strain G1 (PRJNA182977)
----------------------------
--------
Echinococcus multilocularis strain Java (PRJEB122)
--------------------
-------
------------
Echinococcus canadensis (PRJEB8992)
----------------------------------
Echinococcus oligarthrus strain DaMi1 (PRJEB31222)
-------------------------------------------
Mesocestoides corti strain Specht & Voge 1965 (PRJEB510)
-------------------
-
Spirometra erinaceieuropaei (PRJEB1202)
------------------------------------
----
Schistocephalus solidus strain NST_G2 (PRJEB527)
--------------------
Dibothriocephalus latus (PRJEB1206)
---------------------------------------------------------------------------------------------
-
Drosophila melanogaster
-------------
Ixodes scapularis strain Wikel
-------------
-
Mus musculus strain reference (CL57BL6)
-------------
----
Rattus norvegicus
-------------
--------
Homo sapiens
--------------------------------------------------------------------------------------
------------
Danio rerio
----------------------
Ciona intestinalis
-----------------------------------------------------------------------------------------------------------
Amphimedon queenslandica
--------------------------------------------------------------------------------------------------------
-
Schizosaccharomyces pombe 972h-
----
Saccharomyces cerevisiae strain S288C