WormBase ParaSite HomeVersion: WBPS15 (WS276)

Comparative Genomics

For full details of The protein tree pipeline and the subsequent prediction of homologues, see the Ensembl Compara documentation.

This page provides a summary of the Ensembl phylogenetic analysis of protein families. The following views are available:

Overall Summary

Legend
Internal nodes (ancestral taxa) Node types Speciations Duplications Dubious nodes
Leaves (extant species) Gene tree coverage Genes in multi-species trees Genes in single-species trees Orphaned genes
Gene QC Validated genes Short genes Long genes Split genes
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Nematostella vectensis strain CH2 x CH6
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Trichoplax adhaerens strain Grell-BS-1999
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-
Ixodes scapularis strain Wikel
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Drosophila melanogaster
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-
Opisthorchis viverrini (PRJNA222628)
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Opisthorchis felineus strain AK-0245 (PRJNA413383)
----------
----
-
Clonorchis sinensis strain Cs-k2 (PRJNA386618)
----------------
Clonorchis sinensis strain Henan (PRJDA72781)
----------------------
------------
Paragonimus westermani (PRJNA454344)
----------------
-
Fasciola hepatica F_hepatica_1.0.allpaths.pg (PRJNA179522)
----------------
----
Fasciola hepatica Fasciola_10x_pilon (PRJEB25283)
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Fasciola gigantica strain Uganda_cow_1 (PRJNA230515)
---------------------
Echinostoma caproni strain Egypt (PRJEB1207)
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-
Schistosoma bovis (PRJNA451066)
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----
----
Schistosoma curassoni strain Senegal/Dakar (PRJEB519)
----------------
--------
Schistosoma haematobium (PRJNA78265)
----------------
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Schistosoma mattheei strain Zambia/Denwood (PRJEB523)
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Schistosoma margrebowiei strain Zambia (PRJEB522)
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-
Schistosoma rodhaini strain Republic of Burundi (PRJEB526)
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Schistosoma mansoni (PRJEA36577)
----------------
--------------------
-
Schistosoma japonicum strain HuSjv2 (PRJNA520774)
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Schistosoma japonicum strain China/Anhui (PRJEA34885)
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Trichobilharzia regenti (PRJEB4662)
-----------------------------------------
-
Gyrodactylus salaris strain Lier (PRJNA244375)
----------
----
Protopolystoma xenopodis (PRJEB1201)
----------------
-
Spirometra erinaceieuropaei (PRJEB1202)
------------------------------------
----
Schistocephalus solidus strain NST_G2 (PRJEB527)
-----------------------
Dibothriocephalus latus (PRJEB1206)
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-
Hymenolepis microstoma (PRJEB124)
-------------------------------
----
Rodentolepis nana strain Japan (PRJEB508)
----------------------
-
Hymenolepis diminuta strain Denmark (PRJEB507)
-----------------
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Hymenolepis diminuta strain laboratory inbred isolate (PRJEB30942)
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-
Echinococcus granulosus strain G1 (PRJNA182977)
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----
----
Echinococcus granulosus strain G1 (PRJEB121)
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Echinococcus multilocularis strain Java (PRJEB122)
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Echinococcus canadensis (PRJEB8992)
-------------------------------------------
Echinococcus oligarthrus strain DaMi1 (PRJEB31222)
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----
----
-
Taenia saginata strain TSAYD01 (PRJNA71493)
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----
Taenia asiatica strain TASYD01 (PRJNA299871)
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Taenia multiceps strain Gns01 (PRJNA307624)
----------------------
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Taenia solium strain Mexico (PRJNA170813)
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Hydatigera taeniaeformis strain Spain/Canary Islands (PRJEB534)
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Mesocestoides corti strain Specht & Voge 1965 (PRJEB510)
----------------------------------------------------
-
Macrostomum lignano strain DV1 (PRJNA371498)
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Schmidtea mediterranea (PRJNA379262)
----------------
-
Trichinella zimbabwensis strain ISS1029 (PRJNA257433)
----------------------------
----
Trichinella papuae strain ISS1980 (PRJNA257433)
-----------------------
Trichinella pseudospiralis strain ISS13 (PRJNA257433)
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-
Trichinella spiralis strain ISS3 (PRJNA257433)
----------------
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----
Trichinella spiralis strain ISS 195 (PRJNA12603)
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Trichinella nelsoni strain ISS37 (PRJNA257433)
-------------------------
-
Trichinella britovi strain ISS120 (PRJNA257433)
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----
----
Trichinella sp. T8 strain ISS272 (PRJNA257433)
-------------------------
-
Trichinella murrelli strain ISS417 (PRJNA257433)
----------------------
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Trichinella sp. T9 strain ISS409 (PRJNA257433)
----------------
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-
Trichinella nativa T_nativa_rf_gd (PRJNA179527)
----------------------
----
----
Trichinella nativa strain ISS10 (PRJNA257433)
-----------------------------
Trichinella sp. T6 strain ISS34 (PRJNA257433)
----------------------------------
Trichinella patagoniensis strain ISS2496 (PRJNA257433)
----------------
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-
Trichuris suis strain DCEP-RM93M (PRJNA208415)
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Trichuris suis strain DCEP-RM93F (PRJNA208416)
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Trichuris suis T_suis_1.0.allpaths (PRJNA179528)
--------------------------------------------------------
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Trichuris trichiura strain Republic of Ecuador (PRJEB535)
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Trichuris muris (PRJEB126)
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Soboliphyme baturini strain Alaska/Dall Island (PRJEB516)
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Romanomermis culicivorax (PRJEB1358)
-----------------------------------------------------------
-
Enterobius vermicularis strain Spain/Canary Islands (PRJEB503)
----------------------
Syphacia muris strain Spain/Valencia (PRJEB524)
--------------------------
-
Parascaris equorum (PRJEB514)
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----------
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Parascaris univalens strain PG01 (PRJNA386823)
-------------------------
-
Ascaris suum strain A. suum Australian isolate (PRJNA80881)
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----
----
Ascaris suum strain AG01 (PRJNA62057)
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Ascaris lumbricoides strain Republic of Ecuador (PRJEB4950)
------------------------------------
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Toxocara canis strain PN_DK_2014 (PRJNA248777)
-----------------------------------------
Anisakis simplex (PRJEB496)
-------------------------
-
Brugia malayi strain FR3 (PRJNA10729)
----
----------------------
----
Brugia timori strain Flores island/ Indonesia (PRJEB4663)
----------------------------
--------
Brugia pahangi strain Scotland/Glasgow (PRJEB497)
----------------------------
--------
-
Wuchereria bancrofti W_bancrofti_Jakarta_v2_0_4 (PRJEB536)
----------------------------------
Wuchereria bancrofti strain pt0022 (PRJNA275548)
----------------------------
------------
-
Loa loa strain L. loa Cameroon isolate (PRJNA37757)
----------------------
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Loa loa strain CAT (PRJNA246086)
-------------------------------
-
Acanthocheilonema viteae (PRJEB1697)
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Litomosoides sigmodontis strain Bain lab strain (PRJEB3075)
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Elaeophora elaphi (PRJEB502)
-------------------------------
-
Onchocerca ochengi strain Ngaoundere (PRJEB1204)
-------------------------------
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Onchocerca ochengi nOo.2.0 (PRJEB1465)
-------------------------
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--------
Onchocerca volvulus strain O. volvulus Cameroon isolate (PRJEB513)
-----------------------------------
------------
Onchocerca flexuosa strain Red Deer (PRJNA230512)
-------------------------
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Dirofilaria immitis (PRJEB1797)
-------------------------
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Thelazia callipaeda strain Switzerland/Ticino (PRJEB1205)
----------------------
-----------------------------------
Gongylonema pulchrum strain Japan/Hokkaido (PRJEB505)
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Dracunculus medinensis (PRJEB500)
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Setaria digitata strain RSCHEM2018 (PRJNA479729)
--------------------------
-
Heligmosomoides polygyrus (PRJEB15396)
--------------------------
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Nippostrongylus brasiliensis (PRJEB511)
----------------------------
-
Haemonchus contortus (PRJEB506)
-------------------------
----
Haemonchus placei strain MHpl1 (PRJEB509)
----------------------
--------
Teladorsagia circumcincta (PRJNA72569)
----------------------------
-
Cylicostephanus goldi strain England/Cheshire (PRJEB498)
----------------------------
----
Strongylus vulgaris strain USA/Kentucky (PRJEB531)
----------------------------
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Oesophagostomum dentatum strain OD-Hann (PRJNA72579)
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Necator americanus strain N. amaericanus Hunan isolate (PRJNA72135)
----------------------
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-
Ancylostoma duodenale strain Baltimore (PRJNA72581)
--------------------------------
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Ancylostoma caninum strain Baltimore (PRJNA72585)
----------------------------
-
Ancylostoma ceylanicum A_ceylanicum1.3.ec.cg.pg (PRJNA72583)
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Ancylostoma ceylanicum strain HY135 (PRJNA231479)
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Dictyocaulus viviparus nDv.1.0 (PRJEB5116)
---------------------------------
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Dictyocaulus viviparus D_viviparus_9.2.1.ec.pg (PRJNA72587)
----------------------------
-
Angiostrongylus cantonensis strain Guangzhou (PRJNA350391)
-------------------------
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Angiostrongylus cantonensis strain Republic of China (PRJEB493)
-----------------------------
Angiostrongylus costaricensis strain Costa Rica (PRJEB494)
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Heterorhabditis bacteriophora strain M31e (PRJNA13977)
-----------------------------------------------------------------
-
Diploscapter pachys strain PF1309 (PRJNA280107)
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Diploscapter coronatus strain PDL0010 (PRJDB3143)
-----------------------------------------------
-
Caenorhabditis inopinata (PRJDB5687)
----------------------------------
Caenorhabditis elegans strain N2 (PRJNA13758)
--------------------------------------
-
Caenorhabditis briggsae (PRJNA10731)
----------------------------------
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Caenorhabditis nigoni strain JU1422 (PRJNA384657)
-------------------------------
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-
Caenorhabditis sp. 40 LS-2015 strain JU2818 (PRJEB12608)
----------------------------------------
----
Caenorhabditis sp. 26 LS-2015 strain JU2190 (PRJEB12596)
-------------------------
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Caenorhabditis sinica (PRJNA194557)
----------------------------------------------
-
Caenorhabditis remanei CaeRem1.0 (PRJNA248911)
-------------------------------------
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Caenorhabditis remanei ASM164373v2 (PRJNA248909)
-------------------------------
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--------
Caenorhabditis remanei C_remanei-15.0.1 (PRJNA53967)
-------------------------------------
---------------
Caenorhabditis latens (PRJNA248912)
-------------------------------------------------------
-
Caenorhabditis tropicalis (PRJNA53597)
-------------------------------------------
Caenorhabditis brenneri (PRJNA20035)
-------------------------------------------
-
Caenorhabditis panamensis (PRJEB28259)
-------------------------------------
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----
Caenorhabditis sp. 39 LS-2015 strain NIC564 (PRJEB12602)
----------------------------------------------
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Caenorhabditis becei strain QG2083 (PRJEB28243)
-------------------------------
-------
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Caenorhabditis sp. 32 LS-2015 strain JU2788 (PRJEB12601)
-------------------------------------------------------------
Caenorhabditis japonica (PRJNA12591)
----------------------------------------
-----------------------------------
Caenorhabditis sp. 31 LS-2015 strain JU2585 (PRJEB12600)
-------------------------
--------------------------------------------------
-
Caenorhabditis angaria (PRJNA51225)
-------------------------------
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Caenorhabditis sp. 38 MB-2015 strain JU2809 (PRJEB11354)
----
-------------------------------------------------------------------------
Caenorhabditis bovis (PRJEB34497)
--------------------------------------------------------------------------------
Caenorhabditis sp. 21 LS-2015 (PRJEB12595)
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Oscheius tipulae (PRJEB15512)
--------------------------------------------------------------------------------------
Mesorhabditis belari (PRJEB30104)
----------------------------------
-
Pristionchus pacificus strain PS312 (PRJNA12644)
----------------------------------
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Pristionchus exspectatus (PRJEB24288)
----------------------------------
--------
Pristionchus arcanus (PRJEB27334)
----------------------------------
------------
Pristionchus maxplancki (PRJEB27334)
----------------------------------
----------------
Pristionchus japonicus (PRJEB27334)
----------------------------------
--------------------
Pristionchus mayeri (PRJEB27334)
----------------------------------
------------------------
Pristionchus entomophagus (PRJEB27334)
----------------------------------
----------------------------
Pristionchus fissidentatus (PRJEB27334)
-------------------------------------------------------
--------------------------------
Parapristionchus giblindavisi (PRJEB27334)
---------------------------------------------------------------
Micoletzkya japonica (PRJEB27334)
-------------------------------
-
Panagrolaimus sp. PS1159 (PRJEB32708)
-------------------
----------
----
Panagrolaimus davidi (PRJEB32708)
----------------------------
----
-
Panagrolaimus sp. ES5 (PRJEB32708)
----------
----------------------
Panagrolaimus superbus (PRJEB32708)
-------------------------
--------
-
Panagrellus redivivus (PRJNA186477)
---------------------------------------------
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Halicephalobus sp. WB-2010a (PRJNA528747)
-------------------
----------------------
Panagrolaimus sp. JU765 (PRJEB32708)
-----------------------------------------
Acrobeloides nanus (PRJEB26554)
-----------------------------------------------------
-
Ditylenchus destructor strain Dd01 (PRJNA312427)
----------------------------
Ditylenchus dipsaci strain pooled J2 (PRJNA498219)
----------------------------
-
Globodera rostochiensis strain Ro1 (PRJEB13504)
----------------------
---------------------------
----
Globodera pallida strain Lindley (PRJEB123)
----------------------------
-----------
Heterodera glycines strain TN10 (PRJNA381081)
-------------------------------------
-
Meloidogyne incognita Meloidogyne_incognita_V3 (PRJEB8714)
-----------------------------------------
----
Meloidogyne incognita strain W1 (PRJNA340324)
----------------------------------------
-
Meloidogyne floridensis strain SJF1 (PRJNA340324)
-------------------------------
----
----
Meloidogyne floridensis nMf_1_1 (PRJEB6016)
-
-------------------------------------
-
Meloidogyne arenaria strain HarA (PRJNA340324)
-------------------------
-------------
----
Meloidogyne arenaria ASM90000398v1 (PRJEB8714)
-------------------------------
----
--------
Meloidogyne arenaria strain A2-O Okinawa_01 (PRJNA438575)
----------------------
--------------------
-
Meloidogyne javanica strain VW4 (PRJNA340324)
----------------------------------
-------
Meloidogyne javanica ASM90000394v1 (PRJEB8714)
-------------------------------
-----------------------
Meloidogyne enterolobii strain L30 (PRJNA340324)
------------------------------------------------------
Meloidogyne hapla strain VW9 (PRJNA29083)
-------------------------------------------------------
Meloidogyne graminicola (PRJNA411966)
----------------------------------------------------------------
Bursaphelenchus xylophilus (PRJEA64437)
----------------------------
-
Strongyloides papillosus strain LIN (PRJEB525)
----------------------------
----
Strongyloides venezuelensis (PRJEB530)
-------------------------------
-------
----
-
Strongyloides ratti (PRJEB125)
--------------------------------------------------
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Strongyloides stercoralis strain PV0001 (PRJEB528)
---------------------------------
Parastrongyloides trichosuri strain KNP (PRJEB515)
----------------------------------
Rhabditophanes sp. KR3021 strain kr 3021 (PRJEB1297)
----------------------
-
Steinernema carpocapsae S_carpo_v1_submitted (PRJNA202318)
----------------------
----
Steinernema carpocapsae ASM75764v3 (PRJNA202318)
----------------------
--------
Steinernema scapterisci (PRJNA204942)
----------------------------
-
Steinernema feltiae strain NW (PRJNA353610)
---------------------------------------------------
----
----
Steinernema feltiae S_felt_v1_submitted (PRJNA204661)
--------------------------
Steinernema monticolum (PRJNA205067)
-------------------------------
Steinernema glaseri (PRJNA204943)
----------------------------------------------------------------------------------------
Plectus sambesii strain ES601 (PRJNA390260)
-------------------------------------------------------------------------------------------------
-
Crassostrea gigas
-------------
Capitella teleta
-------------
-
Mus musculus strain reference (CL57BL6)
-------------
----
Rattus norvegicus
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Homo sapiens
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Danio rerio
----------------------
Ciona intestinalis
-----------------------------------------------------------------------------------------------------------
Amphimedon queenslandica
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-
Saccharomyces cerevisiae strain S288C
----
Schizosaccharomyces pombe 972h-