Downloads page
This page displays the table of files available for download. The table can be filtered by species by typing in the filter box at the top left of the table. Columns can be hidden using the 'show/hide columns' button.
A number of gzipped downloads are available for each species:
| Genomic: | Raw FASTA genome file |
| Masked Genomic: | Genome FASTA with repeat regions hard-masked |
| Soft-masked Genomic: | Genome FASTA with repeat regions soft-masked |
| Annotations: | GFF3 file containing all annotations |
| Proteins: | FASTA protein file |
| Canonical Geneset: | GTF file containing the canonical geneset |
| mRNA Transcripts: | FASTA of the mRNA transcripts |
| CDS Transcripts: | FASTA of the spliced CDS-portion of the protein coding transcripts |
| Orthologs: | TSV file listing orthologs in other species |
| Paralogs: | TSV file listing paralogs in other species |
| Phenotypes: | GAF file listing all direct gene-phenotype associations |
| Orthology-inferred Phenotypes: | GAF file listing all gene-phenotype associations propagated via orthology |
| Repeat Families: | FASTA of annotated repeat-families |
The specification for GFF3 format can be found here.
The specification for FASTA format can be found here.
The specification for GAF 2.1 format can be found here.
