WormBase ParaSite HomeVersion: WBPS19 (WS291)-  Archive: WBPS18
e.g. O. volvulus, PRJNA60051, WBGene00262434, Bma-eat-4, eat-4 or metallopeptidase

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Gene: JU1783_LOCUS8634

Location

Scaffold auanemascaffold5: 110,578-116,088 forward strand.

INSDC Sequence ID

CALQYR020007457.1

About this gene

This gene has 2 transcripts (splice variants), 197 orthologues and 9 paralogues.

Gene Type

Protein coding

Annotation Method

Gene models produced by UNIVERSITY OF WARWICK

Transcripts

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Show/hide columns (3 hidden)
  • Name
  • Transcript ID
  • bp
  • Protein
  • Translation ID
  • Biotype
  • UniProt
  • Flags
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Transcript IDbpProteinBiotypeUniProt
JU1783_LOCUS8634.11335444aa
 
Protein coding
A0A9P1HWG1
JU1783_LOCUS8634.21095364aa
 
Protein coding
A0A9P1HXU2

Marked-up sequence

Download sequenceBLAST this sequence
Exons
  • JU1783_LOCUS8634 exons
  • All exons in this region
Variants
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>scaffold:JU1783_megahit_v1_1:auanemascaffold5:109978:116688:1
GATGGTTCAAACAGTCAGAGCGTGTTGTGAAACAATGTTTTACAGATGAATCCTGCGGGT
TTGGAGGCTGATCCCTCAAACTTGACAATAATTCTTTACGAAGAAGATCACACTATAGGA
AATTCTTTGAAGCATGTTCTTTGTGAGATGTGAGTCTTTGTCACGAAGTTCTCCTCCATG
TTATTGTTTGAGGCCTGAAGTTGAGTTCTGTGGTTACAACGTACCCCATCCTTTAGAGGA
TAAAATCCTATTCCGTCTTCAAACGAAAAAAGGAATCGAGGCTGCTCCTATATTGCTGAA
AGGATTTGATGATTTAGAAGAAGTAGACTCCTATATCATATATGGCACATCATGTTCTGT
TTGCAGATTTTTGCCAAGATTCGGACAAAGTTTGAGAAAGCATATAAGAAGAAAACCGGA
AGTTTATGAGCAAATTATGATCTCTTTGTAATTTCCTTGTTGATTTTCTAATTGTTGATT
TATTCCTTCGGAACTGAGTATTAAAAGATATCTTTTGTTTATGTTGAGTTTCTTTCTGGG
TTGATCTTCTCTCGACATACCTTCTCTAAATGTCATCCGGTTTATAAAACATAAAACAGA
ATGCCGTGCCAAATGCTAAGTATCCATGTGGGCCAATGTGGAAATCAGTTAGGCCAAAGT
TTTTGGAAGAAAATGTGTGAGGAGCACGGAATTAATAGGTTTCATTAAGTTATAATTAGT
CAATATTACTTCGCAATAGCTACGGACGAAAGACTTGCGAGGATTTGACTGATGACAAAG
AAGTCTTCTTTTACCAAGTGAGGAATACATATATTTTTTTTCTATATAAGGGTTTAGGCC
GATGACAGTCATTACATCCCAAGAGCAGTCCTGATTGATTTGGAACCTCGTGTCATTAAT
GGAATCACACAAAACCCAGACTTCCATCATCTCTTCAACACTGACAACATCTTCATGTCT
CAGCACGGAGGAGGTGCTGGAAATAATTGGGCCAGTGGATATGTGCAAGGAAAGTAAGCA
AGAAATCACAATTAGCCTCATTAGGGAGTCGTTTTTTTAGCGAAGTTAATGAGAGAATAT
TGGACATCATTGAGCGCGAAGTGGAAAACAGTGATCGTATGGATGGATTCCTTTTCACTC
ACTCCGTTTCCGGAGGTACTGGTTCTGGTTTAGGTTCTCATATCCTAGAGAACGTGCGTG
ATAGGTGAGTCTAGGTACAGCCTACTCTGATGTGCTAGGAATTTTATTTAGATTCCCGAA
AAAGGTCATCCAAACTTATTCGGTGTTTGCAAGTCAACAGCAAGATGAATCCGCTGGTGA
TGTTGTTGTTGCTCCATACAACTGCGTCCTATCAATGGAACGACTTATTGAACATGCAGG
TATGTTTGTTGGCGAGGGACCATTATATTGCTTACTACTCATAAGATGAGGTAATCGTAT
TGGACAATTCCGCACTCAACAGATTGGCTGCTGGAAAGTTTCAGACTCAGAAACCTACCT
TTGATCACATCAATTCTTTGGTGAGAACTCACTCGGAAATATTAATCTGATTTTGAACCA
TAGGTTACTCGAATCATGTCAACATCCACGGCTCCCTTCAGATTCCAATCTCCAATTCTT
TCTGACATTCACTCTCTTCATATTAATCCTTTCCCTCCTCTCAAATTCATTCAAGCAGGT
GATTATTTTGCTGTCTCGAAGACAACGCGTTCCCTTGAAGATTCGTATATAATTTGAAAG
TTAAGGCTTCTCCCCTGTTGTCGATCCTGACCAAAAATTCACTCGCAAGACTTCGGTCAA
TGATATTATTCGTTATCTCCTGAAACCCACATCTATGATGGTATGGTTCAGAGAATCTTT
GAATGATCTTAGATTCTTTTAAGGTTTCCACTGCTCATCATTCTAAATCTTCACATTGTA
TGTTAGCTGGATTGATGCTTCTTCAAGGAAATATAGAAGGAGAAGCTCTTCATTCCACGT
TCTATACTGAGCGAGTATGTAAACTGTTCTACTTCCTTATCTAAACAAACAAATTAAGTC
TGTTGTTCACAACATCAATCGCGCTCCTTGGGATGATTTGAATCCTTTGAAAATCATGTA
CTCACCATCATCTCCATATGTGAAATCCCAGTTCAAGGTTTGATCTGCTTGTGAGTTCTT
TGATTTTCGGAATTTGTTTGTTTAGGTTTCCGGATTGTTGCTCAATAATAGCACAAGTAT
CGCACCGATGTTCAGTAAAATCCTGGCTCAGTTCAAGAAATTGAGAAGCAAGAACGCTTT
CATCGATAGATTCACGAGAGAGGTTCGAAGCCAACCTTCCACCTTTCTTATAAAATTTCA
ATTTAGGAAGGATTTACAGCTGATATGATGGATCATAGCGCTGAGCAAGTATCTGAGCTC
ATCGAGCTCTATCATGACATTGAACAAGAGAACTTCTTCTCCTAAACATATCTGAACTTA
TTTATTATGCATATTAACTGTTTCATGGTGTTTCATTCACTTACGAGATCTCTGATGTTT
TAAAAAGAAAATAAACATATCAAAAATGAACGACGTATATTCATTTTTCGAATTCTCTAT
TCCCTTCTACTCACCTACACACATCATCAGAAGATTACACTTTACATCAATCTCTTTGTT
CCTTTTCCGTATGTAATTTTACAAAATGATCGTTTGAACTAAACATTCTGACTCTCTCTA
TCTGACTTTCAGTTCTAAATTACCCACAGCAGGTCCGACAACGATAAGCAGGCTGTTTCC
TTAGAAACGTCCTAAGACTGATGTCATAACAAGCTCAGATATTTCGATCAATACCCTTTT
ACCTTCTTCTTTCTAGCTCGATGATGCTTATTTTCTTTATGTTCAATATTCATTCGTTCC
AAATAAGAATTTTAGAATACCTCATAAACTTTCAGACTTATATTTCCGTCCGTGAAAATA
CGTTTAGCTATTTTTGTAATTATCTCTTACCTCTCTTGCTAATGCGTACTATCTCACACA
GTCCACGTTTTCTGTCCTTCTTCATTCCATTTAACAAAATAAATCGTTTTTATCGTAAAT
CAAAATAATAACAAGATAGTTCCTTTTTTACCATTACCAACCCGTCGTTCTCGCGAAAGC
ATACCTCAAAGAGGTCCTTTTGAAGTGTTTCGGTTTGCTCAAATCGACGCGCTTAAGCTT
ATTTATAACTTGTCAACTTATACAGAGCTTTTCATTTTCAGGATGATCGTTTGAGCTTCA
CTCCTTCGTGGACTCCATTATTATTTTATTTCTGTAAGCATCATCTGCATCGCAATAACA
GCAAAACTCTATGTAAGTGATTGTGGTTTCAGCAAAACTTCTGATATTGCTATCCAGATT
TTATTTTTGTCACACAATGTCTGATACCGGCAACGTCGTTTCGGCTTCTTTTTGGTAGGT
TTTTGTATTTTGTTAGTCGTGCAGATTCGTAAAGTTTGACCATAAAAGACCATGTTCAAC
GTGTTTGATGAGGAAGGTATGAGTACTTACATCCATTATGATTCATAAATAGCAAACTCA
TGTTTATCAAGTTTACCCTCATTGCCTTCATATACATTCAACCGATATTGATTTTTATTA
TGTTGAAAGCCTCTTTTATGGGTTTCGATTTGATTGTAAATTGCCATATCATATGAATTG
CTCATGTACGGTTGAAGAAAGAAACCTTCTCGTTCAAACGAAAATGAACTGTTCGGTCTT
CACTTGAATGGAGTTCAGCTTCGATTCCATTTCTGCCTTAATTATCACTTCTTTTTTTTT
TTTGGTTTTCTATAATTATCACAAATCACCATGGCAGCAGTACATGGTAATTGTGCGTTC
ACTCTCCTTCCTTCCCTCCTCCTCTCCACTACTTCTCTTTCTCTGTCTGTTTTTCGGAGA
ACACTTTTTTGTATTTTTTTTTGCGCAAAACAGTTTTTCTAATCTCGATGCCGATCTTTT
ATCAATTGTTTCATTAGTGTAGTTGATTATTCATCGATTAGAGCACAAAGTTCTGTAAAT
TTTATCATGGGCGAAGAGATTTCGTGTTTTTTTAGGTTTGTTAATGAATCGGCTTATCTA
ATCACTCCCATGACACGGGCTCTCCAAACCGAGATCCTCCTATGATTCAGTACCATCCCA
TCCTATGCGTCACACTTACTTTCCATATTTACTTATAATTCGTTCGAAAAGTTAATGAAA
ATGTGTTTACTATTTGTATTATAAATGCCTTGCTTCTTCTATTTACCGATGAATCAGCTT
CATTTCAGAGAATAATTTCTCTAAGACTCTGAACACCAATACACTTCAATCCTCTTTCAT
TCGCATTACCTGCCCTTTCCTTCTTCCTTATGCTTTGTATTTTTCTGTGAAACTTTGTTT
TTTTGTTTCAAAATTGTACGACACACACGAGACGAATCAGATGTTTTCATAATTTGTTCT
AAATTTTCCATCTGCCGTTTTAAATCATACATGAAGTTTCTACAATGCATTAAATCGACG
ATCGGCTTATCGCTAGTCGCTTGACTCGCTGCCTAAATTGTTATCTAGACCTCTCTTTGA
TTGTCGCATTGATTGCTTTTTTGAGTTCCAACTATTCATGGCATAAGACTGCTGTTCCAT
TACGGAAAACCTTCTTAAAGAACTTTGTTTTGCAGGATGAATGGGAGTTCTCCTGTAGAA
GTTGATACTTTGACTGAGGAAGACAAAAGCTTCTTCACCGATTTCTATATTGGACTCATC
TTAGCAGTTTCCTCCTCTATCTTTATCGGCACTTCCTTTATTATAAAGAAGAAAGCTTTG
CTCAAGGTTCGTCGTAAAGGTGCTTCGCTTAATCGCTCATTTTCTGTTATAGTTGGCCAA
TGGGGACATATCACAGAGAGCGAGTGAAGGAGGATTTGGATATTTGAAAGAATGGCTGTG
GTGGATGGGAGTAATAACTAGTTCGTTTAATTAATTTCAAATTGAAATGATGTATTGAAC
TAAATTAGTGGGTGTTGGAGAACTTTGTAATTTCGCTGCTTATGGATTCGCTCCGGCCAG
CTTAGTCACCCCTCTCGGAGCCTTATCCGTGATTGTAACGTATGTTTGAAGAAACCACTC
CTTCTAACGTATCACTGTTCAGCGCTGTTTTATCTTCTCGTTTACTTAAAGAACGTCTAA
ACTTGCTCGGGAAGATAGGATGTGCTGTTTGTCTTTTGGGATCAACCGTTATAGTTATTC
ATTCACCCAAAGAAGAAGAAGTAGCGTCCATGAAAGATTTGGCAGATAAAATGAAAGATG
CCAGTGAGTTCCAAATGTCTTAGACAGTTCTCATGACTATGTTCCAGTGTTCATCCTCTA
TGTAATAATGGTCATTTTTGTGACTTTGGTGCTTGTGCTCTATGTAGCGCCTCGGTATGG
TCATTCTAACATCGTCGTTTATATAACAGTTTGTTCGTTGATTGGATCCTTGTCAATTCT
TTCAGTGAAAGTAAGTGTTTTAATTTCTCATTACTTCACTTACTCCATGTCTTATAGGGC
TTAACGTTGGCTATAAAAGAAACTTTCTCGGGTAATCAACAGTTTACGAACATCCTCACT
TACTTCTGGATAGCGAGTGTAGCGATATGCGTTTCAGTGCAATTGGTAAATCAGAATTTG
TTTCTTCATTATTTTCTCTTCTTTCCAGATCTATTTGAATAAAGCGCTTGATATTTTCAA
CACATCCATGGTAACTCCTATTTACTACGTCTTCTTTACCACGTTTGTCATCATGGCTTC
ATCAATTTTGTACAAAGTGAGTCGTCTATCCATAGACAATCAAACGTCTTTCTTATTTCA
GGAATGGTCTTGTTTGGGAGCCTCTGATATTCTTGGAAATATTGTTGGATTTTTAACCAC
CATCATCGGCATCTTCCAGGTTCTTGGTTGTTATCTTCCTCCTTTTTTACTTTCTCTCTA
CAGATGCAACTATTCCGAGACGTCAACATCACATGGCGTCAAATACGCTTCTTCCTCAAT
AGGCCGTCGTCTTCTGTATTATCATTAGACTTATCTAATTCTTCAACGAATCTCGTGGAT
GATTTTTGCGTTCAAGAGTCTCAACACAGTCGAAGAACCATCTACACCTAAACTATGAGA
TCTTCTAAGATAATCTTTCAACTCCAGTTCAGTTTTTTCGTGCTTGCTCAGCAGTTTTGC
CATTTTCTTCCGCAATAGTCTCGTGAATATCATCCCTCAAAGTTTTTGGATCTTCAACGG
CAGAACAGAACGCATTTACTATCAGTCAAAAGCCTAGGGGACTTTCTCCATGTCAGAATT
TCCATTCGAGCTAGATTAGTCCCTCATTAGAGATATGCTTCTCATTCTCTAGCAGGGTTG
AATGTTTCATCTCTTCTAAGTTGTATTTATCCTCTAGCTTTACGCTCCCCTTTCTTGCCT
AGCGAATTCTCTTTTTCCGATATAACGTTACTTCAAACACTTTCCTCTATTCATATCGAT
TCTCATAGTCGACCAGTCTGTATTTGTAGGCTCCCGATGCTTTCTCCTTGATTATCACTA
GTTTTTCTTGTGAGAAGAGGATTCCGTAGGATATCATGGAGATTTTCTGCATTATATGGA
CCAACCGGTGTCCGCTTTATTTTCTTTTTGTTTTCGCAACCAAACTAACACTGGTGATTC
GATTTTTGGGTAAAGTTCCTACGTTTTTATTACAGACAAAGACTTGTTCCT

Sequence markup

WormBase ParaSite has a number of sequence markup pages on the site. You can view the exon/intron structure of individual transcripts by selecting the transcript name in the table above, then clicking Exons in the left hand menu. Alternatively you can see the sequence of the transcript along with its protein translation and variation features by selecting the transcript followed by Sequence > cDNA.

This view and the transcript based sequence views are configurable by clicking on the "Configure this page" link in the left hand menu

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