WormBase ParaSite HomeVersion: WBPS19 (WS291)-  Archive: WBPS18
e.g. O. volvulus, PRJNA60051, WBGene00262434, Bma-eat-4, eat-4 or metallopeptidase

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Gene: CBN24592 WBGene00163317

Location

SuperContig Cbre_Contig38: 58,950-59,594 forward strand.

INSDC Sequence ID

GL379824.1

About this gene

This gene has 1 transcript (splice variant) and 11 orthologues.

Gene Type

Protein coding

Annotation Method

Protein-coding model imported from WormBase

Transcripts

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  • Name
  • Transcript ID
  • bp
  • Protein
  • Translation ID
  • Biotype
  • UniProt
  • Flags
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Transcript IDbpProteinBiotypeUniProt
CBN24592.1480159aa
 
Protein coding
G0N041

Marked-up sequence

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Exons
  • CBN24592 exons
  • All exons in this region
Variants
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>supercontig:C_brenneri-6.0.1b:Cbre_Contig38:58350:60194:1
GCGCCGCAGTCAATATTGCGACCATCAGTAAGACAGAGCCCGCGAATGAAACCGTTTGAA
AACACGTACAAAAAAATTTACCGTGTCAAGACCTTCAAAATGAGTATAATCATGCCTAGG
TTTGCTGAAAGCTGGGTCCCAACACGGAGAGCTACAGTATCCCAAACCTTAAAGGCGCAG
GCACTTTTGAGAAATTCAAATTGATCCGAAATAGGTCATGATCATACTTTTCTGAAAGCA
CTCGACGAGCTGAATCTGACTGTCATGATTTCGAAGAGCTAGGAGTGAAACCTACAGTAA
CCAAAACCTTAAAGGCGCATACAGTTCTAGAAAAAGTGAAGAATCCAAAGTAGGTCATGA
TATTATTTTCCCAAGAAATCTCGGCGAGCTGAGTTCTGGAAAAATGAAAACTTTGGTGTT
TACTGTAGTTTATAAATTCACTTTCCCAAAAAAAACCTCAAATTTTTACACGTCAAAAAA
TATCCATATCCACGTGGTCACTGATGCCATTTTTCTTGTTTTTGATATTATCGATTTTTA
GAATTTACTTATAAATTCTTTCCGGCAATCATTCCCATTTTTGTGATCATCATTCGAAAT
ATGATCGTAATTCTTGGCCACTTAATAAGCAGGTAAGTTTTTTTGTTGAATATCTGGACA
TCCCGGCAACCCGAAAAACATTGCTCAGAATAACGCCAGTACTAATTCTCCTTCTATGCA
CCACCACCATTTTCATTCAATGTATTGTCAAGAAAAAGCAGAAGAAAGGCGGAAAACTGG
CCCCATCGCCACCGGATGGAAAAGGTCCGCCGGCTTTACCCTCTCCTGGAACCACATCGA
AAAAACCACCGACTCAACAGAACACTTCGTATCAAATAATGAAAGGACGACAGAAGCCGA
TGGTGGTTTTTGAGGATGAGGTCACGAAAAGTGTGAGTCTGTGCTTTTAGGGTTGGAACT
ACTGTAGCTTTTCGTGGTGGGACACATCTTAAGACAAACTTGCACTCTAAGCTTTTTTCA
CCCTGAATCCAGAAATTCCAGATGCCAAAAACGCCAAAAACGAAAAGTGTCGAAGAAACC
TCCATGAGAGTAAACCGAAACGCGTCCAATTCCTCGAAATTCGACTCATCCGCATCGGTT
CATGAGAAGGAGTTGCCTCAAACATCAAACAAGATTGTGACTCCGGCGAAAAAGAACGAT
AGTGTGGAGGAGAATATTGAGAGTGTGGAGTCGGATGAGCAGTGAACTTTTTTGAATTGA
GAATAAAAATTTGAAAAAAAAGAAGACTTATTGTTACACGTAATAGTATATGGCACGGAA
AGTACAAATCTGCAAACTTTCAAAAAAAATTCAAAACTCAAATCTTCTCATAAACGTGAC
TATTCACAGAATTCTTTGACTATCTAAAGAATCCTCCGATCACCTGCAGTATCCCATGAC
AACCAGTACACCATTACAATCTAAGGTACCCAATGGTCACCTACAGTACCATGTGAACAA
CTACAGTACCCTATGAACACCTACAGTACCCCGTGATGGTCTTGAGTACCTCGTGAACAA
CAAGCTTAGGTTCCGAACATTTTTTTTCCATTTTTTGATCTACTTTTGCTATTTTCTGTG
ATAAAATCGAATCAATAAAAAATTTTCATTTTTCATTTCAAATAAAACGAATCCATTTTC
TTTTATTGCAGTGCCTGTTACTTCTTGGTGCTCTTCACTTCTCGTGGGGCTAACCGTCCA
ACTTGTATCCTGGCTTCGCCTTACGGCACAGGACAATGGTATTGTCGGCACACGCCTTGG
CAGACGCAGAGTGCTCCTTTCCTTGGTAACCGTATCCATACTTCT

Sequence markup

WormBase ParaSite has a number of sequence markup pages on the site. You can view the exon/intron structure of individual transcripts by selecting the transcript name in the table above, then clicking Exons in the left hand menu. Alternatively you can see the sequence of the transcript along with its protein translation and variation features by selecting the transcript followed by Sequence > cDNA.

This view and the transcript based sequence views are configurable by clicking on the "Configure this page" link in the left hand menu

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