WormBase ParaSite HomeVersion: WBPS19 (WS291)-  Archive: WBPS18
e.g. O. volvulus, PRJNA60051, WBGene00262434, Bma-eat-4, eat-4 or metallopeptidase

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Gene: CJA33974 WBGene00209821

Location

SuperContig Cjap.Contig14330: 3,887-6,314 forward strand.

INSDC Sequence ID

GL471480.1

About this gene

This gene has 1 transcript (splice variant), 16 orthologues and 1 paralogue.

Gene Type

Protein coding

Annotation Method

Protein-coding model imported from WormBase

Transcripts

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Show/hide columns (3 hidden)
  • Name
  • Transcript ID
  • bp
  • Protein
  • Translation ID
  • Biotype
  • UniProt
  • Flags
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Transcript IDbpProteinBiotypeUniProt
CJA33974.1965322aa
 
Protein coding
A0A8R1EHZ6

Marked-up sequence

Download sequenceBLAST this sequence
Exons
  • CJA33974 exons
  • All exons in this region
Variants
  • loading
▼▲
>supercontig:C_japonica-7.0.1:Cjap.Contig14330:3287:6914:1
ATTGTGTGAAAATAGAAGTTAACGAAATTGAAATTTAAAAAATTAGAAACGTAACAAAAT
GGAAACGCGTGAAAACAGAAGCGTAGCGGAGCAGAAATGTGTCGAAAGCCATGGAGCGCG
TTTGCGAGAACTTTTCCAAGAAACGAGGAAAAACCCTGCAATTTTGTCCTAATTTTTTTA
GGTTTTTTCCTTGTTTCTTGGAATCTCGCAACCGCGCTCCATGGCGCCTTTACTTTAGTT
TCATTTCGACACATTACTGCTCTACTACGTTTCTGTTTTTACGTGCTTCCATTTTGTTAC
GTTTCTAATTTGTTAAATTTTGATTTTTTTGATTTCTATTTTCACACAATTTCCATACAG
TTTTATTTTGTCCAACTTGTATTTCGAAAGATCCCCAATTTTTGCGTTTCGGTTTTCTTT
TTGTAAAACGGCATTTAACGAGAAAGATTGATAAAATTTTACAAAATGGTATATAAATTT
TCATGCGAAATTGCGACAGTTTAGTTTTTTATACAACGGGTCTCTTTTATCTCCCAGCTG
CAACTCGTTTGTTTTGAGACGTTCCGCATCCTACGTTTTTTATTTGTTTTCTTCTTTCAG
AACTCTTGCTAAAATCGCCGCCGAATTCTTCCTTCGACTGTCTCCACTGCAAGTGAACTT
GAAATCGGTGGTGCAGGTGGCAAATGCGTGCAGAGTGGACACTGCCGAACTGCAGGCCTC
GTTGATTCCGAATTTGCTGAGCACCAGGAAGAGCCGACAGTTGACGAACAAGGAGCTCAC
ACAGATTTACGCCATCGCCAAGGCTATTAACGTTGGTTCATTTTATTTGGTATTTTATTG
GCAAAAAAGTCTGCGTTTCAGCTTTCCATGTCCGATCTACTCAAGGCGTTTGAGAATGAA
TCGATCGGTGAACAACTGCTTCCCGAGGTGACTTTTTTTTAAAATTTATTTATTTATCCG
AAAAACTTGCTTTAGGTGCTCAACACGATTCAATCGAACCCGGCAAAACACGCAAATTTG
ATGCAACACGTTGTTGAGATGTTTGTGAAGCGCGCCTTGTCGGCCGAAGGAAATGTGGAC
AAGATTCGAGACTGTGATGCAGAGTTAACGTGTGTTTTTACGAATATCACGTCCAAATGT
GGTTTAGAACTGGAACGGTGATTTTGCGTCAAATGGTGTACATTGCGGTCCGGTCTCGCC
ACGAACGGTGTTTGCAGACTTGTGGTTTTGAATTTTTTGTTGTTGTTATTTGAGCAGTTT
TTAATTTCAACATGCGATAAAAAATTTGCACCGGTAAAGAAAAATTAAAAACTGCAAATT
TTCGAAACGGAAAATGCAAATTTGCGCGTAAACCCACTAGTCTGCAAACACTGTCCGTAC
TATTGGACGCCATATCACCATTCTAGGAATACGAATACGAGGAATTAAAAACAATTTTCT
TGAGCCTTTCCTGTTTTTTTTTTTACAAAAGTTGCGGCATACTAGTACGCGTGTTTTTTG
GTGCCAATTGGCGAAAAAAAGCTACGCGAAAAAATGCGAAAAAAATTTTGAAACGTCCCA
GTTTCGAAAATTGAGGCGCAGGGGCATTTATTACGTATTCCCGAGTACGTGAGATGTCGT
AAAATGGGTCTTGACACGATCGGTGTTTGCACACTTGTGGATTTGAATTTTTTTTTTTTT
TTTTTTTTTGAATTTTTTCTTATTTTTTTCATGTTATTTTTCTGTTTTTTTACTTATATT
TTATACTTTGGGGGTCATTCATGTAAAAAATAAAACGATTTTTCCAATTCACACATGTCG
AAAAATGTAAACAATCCACGGGGTGTTGAGAGGTACATGAAAATGAAAATTTAAATTTCG
CGGGAAAGTTGCCACGTCACTCGAGAAAAAAACGCGCGAAATGGCCTGTTCAAAACGTCG
TTACTGCGGCCCCACAGAAATTTTTTTTTACTTTTTTTCTTGTGGGTTCATATATTTTGT
ATAATTCTAAATATTTAAGCAATATTTCCGCCAGCGCCTCGTTTTTGAAAATCCAAACTG
TTTCAACTCTGTAACAACCACGTTTCCTCAAATCTGTGTGAGCAGTGGGGCGTATTTTCA
CGATGTACTCTTCAACACGCCGTGACAATCTAGTATCCCAAGTACTGTAGATTGTTTACA
CGTATGCATACACCGATCGTGGCGAGACCCATTTTACGGCATCTCACGTACTCGGGAATA
TTGTGAAAACAAAAATATTGCAACGCGGTGTTTGCGTACTTTCGAAATTCAAACGGCAAT
GAGAGAAATAGCATGGGAAATAAAGAGATTTGTTCCCATTTTCATTTGAATTTTAAAAGT
ACGCAAACACCGCGTTGCAATTTTTTTGTTTTCACAATACGTAATAGTAACATTTAAAAT
TAAAAAAAGCTAAATATCACGATGCACCCACCAAGATTGCACCAATTTCACAGTGAAACC
ATCTTCATTTTCAGAAACTTTCTCGCTCGACACGAGCACCTCCACAAAGGAGCCGTCGAA
TGCGCTCGAGCCGGACTTTGGAAATGCACGCAAGTTTTAGTTCGTCGTGATGTGCACGAG
ACAAAGTCGAACGCGGTTTGCGTGGAAGTCCTCACCCACATCGTCAAAAACGGAATACAA
ATTTGGAAGACGTTGAATTCGACGGATCGCCTTCAACTCATGTCTCTGGTTTGCCACCTG
GATTGGACGAATCTTTGCGACGCAGACGGTGCTCGATTGTGTGCGCTGCTTTCCGCGTGG
CAACGTGACGTCAGTCTTCCGTCGTATCACGAAATGTGCCTCCGGGTCGCCCGTTCCAAC
CAGGATCTTTTCCTCCGACCGTGTCAGATCCTTTCGCTCGTCTCCTCTGTTCACATACTT
GCCGACAATAAATCGATCGATTTGACGTCGGGAAAGATTCCCGATTTCCGGCCGCTCGCC
GGTGGAACAAATTGTGGAGCGGCGATTATTGAAGACGATCGGATCATGATTTGGGGAAAT
TTCACGAATGCACAACAAAAGTTGGAGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNN

Sequence markup

WormBase ParaSite has a number of sequence markup pages on the site. You can view the exon/intron structure of individual transcripts by selecting the transcript name in the table above, then clicking Exons in the left hand menu. Alternatively you can see the sequence of the transcript along with its protein translation and variation features by selecting the transcript followed by Sequence > cDNA.

This view and the transcript based sequence views are configurable by clicking on the "Configure this page" link in the left hand menu

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