WormBase ParaSite HomeVersion: WBPS19 (WS291)-  Archive: WBPS18
e.g. O. volvulus, PRJNA60051, WBGene00262434, Bma-eat-4, eat-4 or metallopeptidase

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Gene: Csp11.Scaffold0.g1

Description

BLOC-1-related complex subunit 7 [Source:UniProtKB/TrEMBL;Acc:A0A1I7SXC1]

Location

Scaffold0: 37-444 reverse strand.

INSDC Sequence ID

GL636977.1

About this gene

This gene has 1 transcript (splice variant) and 1 paralogue.

Gene Type

Protein coding

Annotation Method

Protein-coding model imported from WormBase

Transcripts

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Show/hide columns (3 hidden)
  • Name
  • Transcript ID
  • bp
  • Protein
  • Translation ID
  • Biotype
  • UniProt
  • Flags
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Transcript IDbpProteinBiotypeUniProt
Csp11.Scaffold0.g1.t1408135aa
 
Protein coding
A0A1I7SXC1

Marked-up sequence

Download sequenceBLAST this sequence
Exons
  • Csp11.Scaffold0.g1 exons
  • All exons in this region
Variants
  • loading
▼▲
>scaffold:Caenorhabditis_sp11_JU1373-3.0.1:Scaffold0:-318:799:-1
ACGTGGAGCAGGCGGGTAGCTAGATCTCATTAAAAAATCATTTCCCAAAAATTACCCCCA
CTGACCACTAAAACTATGGCTAGTTATCTGCGTGTTTCAACACTATACTAACGGTGTCCA
CTAGGTCCAGGGAAGTTGAATGCACACAGTTTCTGTAGCTACGTGGGCACAGTGACATGG
CACTAGGAAATAGGCAAAAGTATCTATCACTCAATAGGCCTACTGTGTGTTGAAAATCTA
CCTGGCGAGTCACAGCCGGCCCCACAGAGGCCCGCGTTGTCCGTGTTAAAACCGATACAT
AACCCAATCCGGAGGGCGTATCGGGGCAGCATTTTGTGCCTTTGTGATTCTGGAGATGTC
TGGTCGCAGTCCCGACAATTCACCACCTCCACCAGGAGGCACCCCCCAACGCTCGCGTTC
GACGTCTAGAAGCAACTTCTCGAGAGAGACTACTCCGAAGGTTCGCTCTAGAAGCCGTTC
GCATTCCACTCTTCGACAAAGTGTTGTCGGCCCCACGAAGACTTTCGTCACCAAGACGGT
CAACAAGGTGATCACCCGTTTGACCGAAGGAAGAAGATGTTTGGAATTCATGTCCAAAGC
GAAACGCTCGGATATGACCATCGACGAAGACCTGGCCGCTGCACGCACCCTTCTACACGA
GATGAAGCAGTCTCAACAACGTCTCGATACGCTCGAGGCTGTCGTCATCAACAAGCTCAA
CACTCCGGAGATGAATCGTTTTGCCGAGAAGCCGATTTCGTGAAGGAAGTGATGAGCACC
TTCGATGATAACAACGTGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN

Sequence markup

WormBase ParaSite has a number of sequence markup pages on the site. You can view the exon/intron structure of individual transcripts by selecting the transcript name in the table above, then clicking Exons in the left hand menu. Alternatively you can see the sequence of the transcript along with its protein translation and variation features by selecting the transcript followed by Sequence > cDNA.

This view and the transcript based sequence views are configurable by clicking on the "Configure this page" link in the left hand menu

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