WormBase ParaSite HomeVersion: WBPS19 (WS291)-  Archive: WBPS18
e.g. O. volvulus, PRJNA60051, WBGene00262434, Bma-eat-4, eat-4 or metallopeptidase

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Gene: Hetgly06899

Description

Alanine--glyoxylate aminotransferase [Source:UniProtKB/TrEMBL;Acc:Q9BJ55]

Location

Chromosome_1: 11,562,264-11,564,564 forward strand.

INSDC Sequence ID

CP049709.1

About this gene

This gene has 1 transcript (splice variant) and 162 orthologues.

Gene Type

Protein coding

Annotation Method

Gene models produced by SCNBase at the University of Iowa

Transcripts

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Show/hide columns (3 hidden)
  • Name
  • Transcript ID
  • bp
  • Protein
  • Translation ID
  • Biotype
  • UniProt
  • Flags
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Transcript IDbpProteinBiotypeUniProt
Hetgly06899.t11505437aa
 
Protein coding
Q9BJ55

Marked-up sequence

Download sequenceBLAST this sequence
Exons
  • Hetgly06899 exons
  • All exons in this region
Variants
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>chromosome:ASM414822v2:Chromosome_1:11561664:11565164:1
AGAGCATATACGGTAATCAATCAAACGTTATTCGCATTTTCCTAACCACTCGTTCAACCA
AACTCACAGATCAATCGTTCTTAAAAAGTAAACACTTGAACTCTCCTATTTATCTAATTA
ATTTTGATGGGGTGATGCAACTGAACAGGGAACAAGAATAATTTATGTACAGGAAGGAGA
GGGGAATGGGGAGGGGAGGGGCGGGTAATCGTTGTGTCGTCGTGGGAATGTCCTCCTCCA
CCCCTCCCTCTGCTACTCCATTCCTTTCATCCATTTCATCATCCCTTCCCTTCCAACTCA
TCCATTATAAATAAGTTCCAGTCATATTCTCAGTGTCAGCTCACAATGTTCTAGTCATTT
TCTCAGCCACCAGTCGCATTTATTTAATTTTTGCTAGCTGTGTTATTTACTTATTTGTAC
ATATGCACAGAAAGAGAGGACCAGGCCATTTTGCTGCTATTCATTCATTGCATTATTCAT
TCATTCGTCTTTCCCCTTTTCCACACAACAAATAAATTCCCATTAATATTTATTTACGCA
ATTTCTCATTCGAATGTACAATATTTGTTTCTAAATCGAATTTTGTGGATGTTATGTATT
TTTGCAGGTTAATTATTTTGTCCGTCCTTTTTGTCCCACTCAAAAATGCTCAGTCGAATG
TTGTCCTCGGCTGTTGCCGTCCCTCGGATGTGTGAATCAAACAAAAAATTGTTGAGGAAA
GGCGCGACTTTCGTTGGTCTTCTCCGTGGGGTCAGTCACTCGCCAATTCGGCGTCCCTTT
TTAATTGATTCTCCTAACTCATTTCTTATCAGTGTTTTATAATCTCTAGTATATATTGTA
TTTCATTACATTTCCTTTATCACAGTTAATACCTTTTATGTATTATAATTCAAATTCAAT
CCCAAACTACTTGCGCCGATTTAATTCAAATTAGCAAATAATAAATAACGTAATTAATTA
TTTATTTATTCAAATAAATTTATATTTGCTTCGAAATACAATTTATCTTTTTTTGATTTC
ACGTTTTGTTAATTACCAGATTTTCCCCTTTTAGCGAATGGCCAACTCAACTTTCACTGC
CACAGTTACCCCTCCTCATCGGCTCTTACGTCCGTTGCATATCAACGAAAAAAAATTGTT
CGGACCTGGTCCCAGTAACATGCCACCACTCGTCCAGGAGGGACTCGTTCAACCGTTGCT
CGGACATATGCATCCCGAGTTCTTCGAAGTGACTCATTTGATTTATTTCTTACAATCAAT
CGCTTTTCTTTCAGATTATGGATGATGTGAAAGCCGGCATCAAATACATTTTCCAAACTG
AGAATGCGCTGACCTTCGCTGTTTCGGGCACTGGCCATGCCGGGATGGAATGTGCCATTT
TGAATCTGCTGGAGCCTGGCCAGACCATTTTGGTGGTGCAAAACGGAGTGTGGGGCTTGC
GGGCAGCGAATTTGGCGGAGAGACTTGGCATTAAAGTGCATCGATTGGTCGTACCGGAGG
GAGAAGTGATTAATTTGGACGATTTTGCCGAGGTTCGTAGGAATTTAAAAATCTGCAGAT
GAATTATGCTGCCTTTCCCTTAGGCTGTGGATAACTACCGTCCCCAAGTGGCATTCGTTT
GTCATGGTGAAAGTTCGACCGGAGTCGTCCATCCCTTGGAGCGTTTTGGCGATATTTGCA
ATGCATAGTAAGTAATTTCATGTCAAACTATTAAATCTCTAAAACCATTTACGTGTAGTC
CACACTTTCTAATCTGTCCCCCTTAGTGACGTTCTTTTCCTCGTGGACACCGTCGCCTCC
ATTTGTGGTGCCCCTTTCCATGCCGATGCGCTGAAAGTTTCTCCCTTTTTTCGAATTTTC
TTGCATTTTTATATTTGAAAGGTTGATTGTGTGTATGCCGCAACTCAAAAAGTGTTAAAC
TGCCCGCCCGGGTTGGCTCCCATTTCATTCAGCGAAAAAGCACTGTAAAAATTAGTCATA
TTAAGGAAAAAAAGTTTAATTCAGGGAGAAAATAACGAAGCGGAAAACGCGAGTGCCCTC
ATTTTATTTCGACGCGTTAGAGTTGGGCAATTATTGGGGCTGTTTCGACGAGCCGAGGAG
GTTGCAATTTTTATTGCAAAATGCAAACAAAAAACGGAAAATTTGAGGACGTTTAATAAA
CCATTCAATTTATAGATACCATCACACGGCGCCCATTTCGTTGGTTTATGCGCTACGCGA
AGGTCTTTCAGCAGTTGCCCAGGAAGGAATTGGGCACATGGTAAACCGACACAAAATCAA
TGCAAAACTTTTGTATGACGCTTTTGACCAATTGGGACTGGAATTGTTTGTCCAAAAAGA
GGTAATTAAGACAGTTAATTGTTTTGCTATATATCCGAAAAAAATTGTCAAGAATAATCG
TTTGCCATGTCTCACCACCGTACGCGTTCCCGAAGGTGTCGACTGGAAGGCGGTGCAAGA
CAAACTGATGGTATATCCGATGGTTTACTATATTGCTTTATCAAAAAATTCAAACAGGCC
CAAGGATTTGAAATTGCCGGCGGATTGGGACCAACGGCGGGTAAAATATGGCGCATCGGA
ACATTCGGAATCAAGTGAAATTGCAAAATTTCTTTTTTTAGACGACTGTTCATTTGACTA
TTTTCTAAACAGTTCGAACCCGGAGGACATTGAGTCACTTAAACAAGCATTGAAAGGAGC
ACTTTACGAACAAGAGGAGGAGGGACAGTCGGACCATTTCAAGGCGGCCATCTGATGACA
GAGGGAAAAATGGCAAAATAAATTAAGACGGTTAATTAACAATGGGTAGATCATTAACAT
AATATATCTTTTGGTTATTTTGGCACATTTCACTATGAACATGTCAATTTTTAAAAAGGA
CGGACAATAAAGTTAAACAGCAACATTGAAAGCTTAAGGCGGACCTAATCATACGAACAA
ACGTTAGCAACTTGGTCGTGGAGTCCATAGCTAAATTTATATATCTTATTCTTGTGTTAA
TTGATTAATTAGTTATCTGAAAAATTATTAGGCTCTAACTTAGAGCAACCAATACTGCTG
GTTCTTATCCCCGCCTGATTCCAACCCCGGCGAATTGGGGTCGGTTATGACCCCGACTTT
TTGAATCGAAAATTGTCTTTTGTTTTTTTAAATGGCGAAATTGATGAATTTTATGGTTTT
TGAAAATTTATTGCTTATGTGAGTTTTAGAAGCGGAATCTCAATTTCCTTAACGAATTTA
AACATATTTTAAAATTCCCAGCCTCCGAATAATTAGCTACCAAAAAATAACAAAGAAACA
ATCACAATAGTCTCAATAGACGGTCCTGTCAGTTTCCCTTTTTGCCAAATGATATGTCCG
CGTGTGTCGGTAGACCCATTTCCTCTTTCATTCGCCTTGGCCAACTCTGTCTCTCGGAAT
CAGTCGCAATTCCGAGCCGTACTTCATGAAAATGTCCGATGCTTTCTGCGCAGGATTAAC
TCCAACGCCTAAAAATAATGA

Sequence markup

WormBase ParaSite has a number of sequence markup pages on the site. You can view the exon/intron structure of individual transcripts by selecting the transcript name in the table above, then clicking Exons in the left hand menu. Alternatively you can see the sequence of the transcript along with its protein translation and variation features by selecting the transcript followed by Sequence > cDNA.

This view and the transcript based sequence views are configurable by clicking on the "Configure this page" link in the left hand menu

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