WormBase ParaSite HomeVersion: WBPS19 (WS291)-  Archive: WBPS18
e.g. O. volvulus, PRJNA60051, WBGene00262434, Bma-eat-4, eat-4 or metallopeptidase

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Gene: SMTH1_31430

Description

Malate dehydrogenase [Source:UniProtKB/TrEMBL;Acc:A0A183PHG9]

Location

Scaffold CHR_1: 22,036,162-22,037,700 forward strand.

About this gene

This gene has 2 transcripts (splice variants), 324 orthologues and 1 paralogue.

Gene Type

Protein coding

Annotation Method

Gene models produced by Wellcome Sanger Institute

Transcripts

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Show/hide columns (3 hidden)
  • Name
  • Transcript ID
  • bp
  • Protein
  • Translation ID
  • Biotype
  • UniProt
  • Flags
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Transcript IDbpProteinBiotypeUniProt
SMTH1_31430.11410329aa
 
Protein coding
A0A183PHG9
SMTH1_31430.21443307aa
 
Protein coding
-

Marked-up sequence

Download sequenceBLAST this sequence
Exons
  • SMTH1_31430 exons
  • All exons in this region
Variants
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▼▲
>scaffold:tdSchMatt1.1:CHR_1:22035562:22038300:1
CTAGAATATAATGTGATATAATCCGGGTAATCCGTGTTATCACTGATGGAATCACTGTTG
CTCTATTTTAAAATTCTGGACCCGTAAAACTAATTATCACAAAACGATCTTGAAACCAAG
ACGACATAGGTACAAAGATGTCACAGATATTCAGGATTTGACAACGCTCTTGTCCGTAAC
ACTTTTATGATCGGAGGATATCAGGCCAGTCGAATAATAAGTCATGAATGAAGGAGTTCA
AATTTATATATTAGAAAGTTGCCGATATGTTGTGAAACGTTTGTTCTAAACTGGTTAGCA
ATTGCAGTGGATGTGTAGCATAGCATATCCAGTTGTGACCTGGTTTATATGTGTGACCAA
GTGCCTTCAGCTAAGGAGTGTCCAGTAAAAGCCAGGATCACTGTCTGAGAGCTGGAGATT
TATTTCATACGAAAGACACGTTTCAATGCTTTGTGAGCCTTTATTCAAGGAATCCAAAAC
AAATTGTGCCATGGAACCCATTGAGAAGAGAATGGACTTTCGTGCAAATAGTTAAAGTGG
AGATTGGCAAACTTTAAATTATTGTTTAATCTTTACTTTAACTTACACCTAAGAGAATAT
CCATTTTGGATAAGATAGGAAAGAAACAAGTGGTAACTTTGGTCTCGCTAAACCAAAACA
GGAATATACACCTTATCATATCAAGGAAGCTCATTAAAGTGGACTGTATGAACAAATTAT
ATCGTCGAGTCGCTAAAGTCTGTTATGAAGAACGATGTATATTGTACAGCTGTCTTAATT
TGTTTTATCCTGTCAACGTTTCGAGTACATGTTGACCGTGCGTATTTCAATAGTAATTTA
TCCAACAACAATAAGAGATGTCAGAGGTTAGTTGATATTTAGTACTATTACCTTTCAAGC
CAATAAGAGTTTTGTTGACAGGTGCAGCTGGGCAAATAGGATATTCACTCGCCGGGATGG
TTGCTCGTGGTGATATGTTCGGACCTGATCAAGTTAGAGATGTTCTTTTCTAACAACTGC
AGGAAGTTATCTTACATCTGTTCGATCTTGAACAAATGGTAGAGTCTCTTAAAGGACTTG
AAATGGAACTTCAGGACTGTGGATTTCGACTTTTAAAGAGTGTGGTTGTGACACATAAAC
CAGAAGTAGCATTCAATCAAATTGATGCTGCACTTATGGTTGGGGCTATGCCTAGAAGAG
AAGGGATGGAGCGTAAAGATTTGCTTAATGCTAATGTGAAAATTTTCAAGGAGCAAGGGC
AGGCTCTGGACAAGTATGCCAAAAAGACTGTCAAGGTGGTTGTTGTGGGTAATCCTGCTA
ACACAAATGCACTCGCACTGATGAAGAACGCTCCTTCCATTCCTAAAGAAAACTTTAGTG
CGCTCACAAGACTTGACCACAATCGTGCCCAGTCATTTGTTAGTCTAGGTTCCTCTTAAT
TTTTTCCATAGATAGCCAAACGTTTGGGAGTTTCGTGCGATTCTGTAAAAAATTGTATTA
TATGGGGCAACCACAGCAATACGCAGTTTGTCGATGTTAGTCATGCTGTTGTAAAGCAAG
ATGGGAAGGAGATTCCTGTCGCTACCGCAATTAATGATGATAACTGGATAAAAAACGAGT
TCCTAAGCGCTATCCAGAAGCGCGGGGCTGCTGTTATAGCAGCCAGGAAACTAAGTAGTG
CACTGTCTGCTGCTAAGTCTGTCTCAGACCATATGCACGACTGGTGGCTTGGAACGAAGG
AGGTATGTTTCCAGTTAAACTTATTCTGTTTTAAGGGCGAGTGGGTATCGATGTCTGTAA
TCAGTGATGGTTCTTATGATGCTCCAAAAGATGTTATATTTAGTTTTCCTGTCCAAATCA
AGAATGGCAAATGGACCATCGTCCAGGGTTTAAAACTTGATGAGTGGGCTAAAGGCAAGT
TCGCCATAACAGCAGAAGAGCTCAAGGAGGAACGCATCGCGGCAGGGCTTGATTAATGAC
TTCCTTACTGTTGTTACTGCCAGTATTCTCACCACTGTAGTAGCTACTTTTTGTAGTTCT
TGTTATTGATCTTAATTTTGCTAAAATTATGATAATTTTTTGCATTTCGTCGGTCGTTTT
TAAAAACAGTTCATAGGTAGATCACTACCAAGCTCTTTGTAGAATCATTGCTTCGACTTA
CTTAGGTGTACCGTAAACTGAAAATAACTAATCTCAGTATTTATACTCCCAACCATTCCA
CACACTGTTATATATCTTTAGGATGAAGAATACGGTTTTGTATTCGCTGCTAATGTGACT
TATTAGTTCATAAATGATCTAAGTGAATAGGAAAATATGCTATTCCAATTTTTTCCGTTA
GTTGAATAGATTAGGCGATTTTGTTCAGGCGAGTTTTAAAGGAGGGTAGTGATTTTCGTA
CTGTGAACTCTTCTTGCTATGTATTTATTACAGCAAAACTATAGTTGAAAAACTCTAACG
GGAATTGTTTTGCACCAAGTTCAGATCTTCATACTTTTAGATGGTTTGGCTATAATTTTT
GTTCTTGAAATCTGTTAGGGTTCTAGGTATATTTCTGTCGTTTTTTTCTGACGGTTTGTC
AGATTTCAGATTTTGTTTTCAGAATAGTAGACACGTTGAATCCGCTACTTTTTTCTTTCT
AAGTTTAATCGACCGTACTCATTGATGCTGTCAATCTATCTGTTTCCCTGTGTAATAGTT
GTGATGTGTAAAGACGCAACCGTTCAACGTCTGCTGCGT

Sequence markup

WormBase ParaSite has a number of sequence markup pages on the site. You can view the exon/intron structure of individual transcripts by selecting the transcript name in the table above, then clicking Exons in the left hand menu. Alternatively you can see the sequence of the transcript along with its protein translation and variation features by selecting the transcript followed by Sequence > cDNA.

This view and the transcript based sequence views are configurable by clicking on the "Configure this page" link in the left hand menu

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