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e.g. O. volvulus, PRJNA60051, WBGene00262434, Bma-eat-4, eat-4 or metallopeptidase

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Gene: DHX38 T4E_11109

Description

Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16 [Source:UniProtKB/TrEMBL;Acc:A0A0V0WI56]

Location

scaffold1000s: 2-369 reverse strand.

INSDC Sequence ID

JYDU01000990.1

About this gene

This gene has 1 transcript (splice variant).

Gene Type

Protein coding

Annotation Method

Gene models produced by the Gasser laboratory at the University of Melbourne, as described by Korhonen et al (2016)

Transcripts

Show transcript tableHide transcript table

Show/hide columns (3 hidden)
  • Name
  • Transcript ID
  • bp
  • Protein
  • Translation ID
  • Biotype
  • UniProt
  • Flags
Download what you seeDownload whole table
Transcript IDbpProteinBiotypeUniProt
T4E_11109.1368121aa
 
Protein coding
A0A0V0WI56

Marked-up sequence

Download sequenceBLAST this sequence
Exons
  • DHX38 exons
  • All exons in this region
Variants
  • loading
▼▲
>scaffold:T4_ISS141_r1.0:scaffold1000s:-121:492:-1
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNGACGAGATGGGCGTGGCGTTGGGCGAACAAGTCGGCTACGCGATTCGGTTCGAAGATT
GCACCTCGCCCACGACCGTGCTCAAGTACATGACCGACGGTATATTGTTGCGCGAGTGTT
TGCGCGACAAGGATCTCGACCACTACAGCGTGGTGATCATGGACGAAGCGCACGAGCGGT
CGTTGAACACCGACGTGCTGTTCGGCTTGTTGAAAGAGGTGCTGGCCAGACGTCGGGATT
TGAAATTGATCGTCACCTCGGCGACCATGGACGCGGCCAAGTTCGCCGACTTCTTCGGCA
ACGTGCCCGTGTTCAACATACCCGGACGCACGTTCCCGGTCCAAGTGACCCACAGCAAAC
TGGGGGTCGAAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNN

Sequence markup

WormBase ParaSite has a number of sequence markup pages on the site. You can view the exon/intron structure of individual transcripts by selecting the transcript name in the table above, then clicking Exons in the left hand menu. Alternatively you can see the sequence of the transcript along with its protein translation and variation features by selecting the transcript followed by Sequence > cDNA.

This view and the transcript based sequence views are configurable by clicking on the "Configure this page" link in the left hand menu

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