WormBase ParaSite HomeVersion: WBPS19 (WS291)-  Archive: WBPS18
Description

Protocadherin Fat 1 [Source:UniProtKB/TrEMBL;Acc:A0A0V1JJF4]

Location

scaffold1s: 177-1,842 forward strand.

INSDC Sequence ID
About this gene

This gene has 1 transcript (splice variant).

Gene Type

Protein coding

Annotation Method

Gene models produced by the Gasser laboratory at the University of Melbourne, as described by Korhonen et al (2016)

Show/hide columns (3 hidden)
  • Name
  • Transcript ID
  • bp
  • Protein
  • Translation ID
  • Biotype
  • UniProt
  • Flags
Transcript IDbpProteinBiotypeUniProt
T4B_11820.1701229aa
 
Protein coding
A0A0V1JJF4
Exons
  • FAT1 exons
  • All exons in this region
Variants
  • loading
>scaffold:T4_ISS588_r1.0:scaffold1s:-423:2442:1
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNGCTCTTACATATGCAAATGTGTAGGCGGATATGCAGGAAAACGTTGTGAAAATTGT
ACGTAAAAAATATTCTGTTGTTTATTTAACAATAAGAAATGTCATTTTTAATGAAATTTT
ACTTTTGAAATAACTTCTCAGCAATACATTACTGATGTAAAAATTAATATTTCATTGCAG
ACATTGAACCTTGCTTGATGAATCCTTGCAAAAACGGTGCTACATGTATAGTATATGATT
ATGGATTATATGTGGATCATCATTGTCAGTGTCCTAATGGTTATATAGGAGAGTCATGTG
AAATAAGTAATAAAAGATTCTTGAATTAAAATTTTTATTTATTCATATTAAGCAGAAAAA
TTTAGAAATTAATAGCTGTAAAGAAATTATGTGTTTGCACGATGGTGAATGTCGTGTCCG
ATCAGACGGCGGATATATCTGCGATTGCCCTGATGGCTATATGGGCAAAAACTGTGAATG
TAAGATTTTTTTCTTAACATTTTAATCTTTTATTTGATTTGTTTTATAGAATATTTTAAA
ATTTTATTTTATAGAATATATTATTATATTCTATGAAATTTGTATTTTATAGAATTGTTC
AACTAATTCATGTTTGCTTAAACTTTTAGTAAACTTAAAATATTCCGTTTTTTAACTTTG
ATAATTCTAGTAATTTTTTATATGAGAAATTATTGTTTTTTTTTGCAGTTTTTCTTTCAA
TTTACTTTTCAAAAATACTTTTTATTTTTTGTTTTTTACGTTTCAGAGAGAGATTTTATT
GAATTTTATGTAAATTTACATTGTAAAGCATTTTACATTAATATGCATTTATTGAATTGT
ATTTTAGTTAAACACCCATGTCCGGGAAAGTTTTGCACTGAACAAATATCATCATGTCTA
TATCCCGACACGGTTGATGATTCGCAGTGCACACTATGTCCAATCGGCTATGTAGGATAT
AACTGTGAAACAGGTATTAAAACATTTTTGCAAATATAAAATATTTTAATTAAGCAAAGA
GTTTTTTTGCTTTTGTAGAAATAGATGGATGCTTAAAAGTTGAATGTCTAAATGGTGGCA
CTTGTTTTTCAACTGGACTGAACACTTTTCACTGTAACTGCCCAAAAGAATTTTATGGAA
AATATTGTGAAAGTGAGTTGGTTTCTTCAGTTCTATTAAAATAATTTTACTTTTTATAAG
TTTCATTGCATTTACTTCTAAAAAAATTACTCATTAAATCAAAGTAAATTATTGAATTAA
AAATAAAAGGATTTTTAAAATTATTTTATCATACAATATGGTTTAATTATATGTATATAT
GTTTAGAGAATGATTTATGTCTTGGTGTAAACTGCGGTACTGGATATTGTTCTTATACTC
CAGATGGTGGCTACGAATGTATATGCCATGATGGACCATGTTTAGGTTAGCTATATTTTT
GCTACACTAAGGAATGTATATATTTAACAATTGGCAATGTTTGTGCGCATGCTCATGTTT
TTGTTTGTTTTGATTCAGCATAACTATGTTTAATTCAGAAAATTAATATTATGTTGCAAT
AACTTAAAGCTCATGTAGTAAAATAGTTTTGCATATATAATTCACTTATTAATGCCGCAA
ATTTTCAACGCTATTTAATCTTAAAATATTTAAACATTTTAAGCATATTTAGTTATAAAA
TATTAAATAAAGATTTTGGTTTTATTAAAAGAATAATTGTTTAGGAGACAACATTTGCTT
TGGCACTGTCTGTCCAAATGATACAGTGTGCATAGGAGATTTGGATTATCATGCCTGTTA
TCGGAAGCCGGGCCATGATAGAATAAAAAGGAAACCGAATGGTAAATAAAAATTGCATTT
ATATTTTTCATTGTTGTTTTTTAAATTTCTTAAAGTTTTCATTTATTTCAAATTAAATTA
AAATTTATTTTAATTAATTAAATGAATAATTTAATTTTGAACTGTTATTGCATTGATTGA
CAATCACTGAACTCTTGTGAGATGTAGAATTAGAATTAATCACTGCAATTAATTTATTTG
CATATACTTTTTTATTTTTTAGAGTACTCTTCATTGATTGATGAAGTGAAAGTGACACTC
CTTTGCCTGTTTGGTTCATTGGTCTTCTTCAGTTTAGTTATGTATTTCCATTCACGATAA
CTTTTTTTTCACATTATTTTAATTTACATTTATAACTAATAATTTCATAATGCTGATGTA
ACACGATTGTTTTATGTTTAATGTAATGATTTAATAAATAAAATAATGTATAAATTTTCA
TGCGTTTGAAATATTATCTAAAGGAACTTTATTAAATTTTACAAAGAAAAAGCTAAACAG
TTATCCAAACACAATTATAAAATATATATAAATGCGTATTGATTATTGATTCATGAATTT
TGTATGATTTTACAATTATTGCTAGAATGCAGAAAGTTTGATTTAA              

Sequence markup

WormBase ParaSite has a number of sequence markup pages on the site. You can view the exon/intron structure of individual transcripts by selecting the transcript name in the table above, then clicking Exons in the left hand menu. Alternatively you can see the sequence of the transcript along with its protein translation and variation features by selecting the transcript followed by Sequence > cDNA.

This view and the transcript based sequence views are configurable by clicking on the "Configure this page" link in the left hand menu